X-19390894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390894
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390894
    reference: chr 0
allele count: 1
allele frequency: 1.152206475400392e-5
allele num: 86790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2481G>A
  hgvsp: ENST00000469203.2:c.2481G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2985G>A
  hgvsp: ENST00000338883.4:c.2985G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.403G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1290G>A
  hgvsp: ENST00000359173.3:c.1290G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3047G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro995Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19390895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390895
    reference: chr 0
allele count: 15
allele frequency: 1.729186360177991e-4
allele num: 86746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1289C>T
  hgvsp: ENSP00000352093.3:p.Pro430Leu
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3046C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.402C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2984C>T
  hgvsp: ENSP00000345629.4:p.Pro995Leu
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2480C>T
  hgvsp: ENSP00000428356.1:p.Pro827Leu
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 5828
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro995Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-19390900-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390900
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390900
    reference: chr 0
allele count: 13
allele frequency: 1.503046559757663e-4
allele num: 86491
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2475G>C
  hgvsp: ENST00000469203.2:c.2475G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1284G>C
  hgvsp: ENST00000359173.3:c.1284G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2979G>C
  hgvsp: ENST00000338883.4:c.2979G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.397G>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3041G>C
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser993Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-19390900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390900
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390900
    reference: chr 0
allele count: 1
allele frequency: 1.156189661352048e-5
allele num: 86491
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2475G>A
  hgvsp: ENST00000469203.2:c.2475G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.397G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2979G>A
  hgvsp: ENST00000338883.4:c.2979G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3041G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1284G>A
  hgvsp: ENST00000359173.3:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser993Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

X-19390901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390901
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390901
    reference: chr 0
allele count: 382
allele frequency: 4.416695571742398e-3
allele num: 86490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2474C>T
  hgvsp: ENSP00000428356.1:p.Ser825Leu
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.396C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3040C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1283C>T
  hgvsp: ENSP00000352093.3:p.Ser428Leu
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2978C>T
  hgvsp: ENSP00000345629.4:p.Ser993Leu
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13662
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5788
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19594
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Ser993Leu
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

X-19390903-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390903
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390903
    reference: chr 0
allele count: 3
allele frequency: 3.471900749930562e-5
allele num: 86408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2976C>G
  hgvsp: ENST00000338883.4:c.2976C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1281C>G
  hgvsp: ENST00000359173.3:c.1281C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2472C>G
  hgvsp: ENST00000469203.2:c.2472C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.394C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3038C>G
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20338
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala992Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-19390910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390910
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390910
    reference: chr 0
allele count: 3
allele frequency: 3.48926469561981e-5
allele num: 85978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3031G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2465G>A
  hgvsp: ENSP00000428356.1:p.Gly822Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.387G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1274G>A
  hgvsp: ENSP00000352093.3:p.Gly425Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2969G>A
  hgvsp: ENSP00000345629.4:p.Gly990Asp
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20338
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 100
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
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genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18668
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly990Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

X-19390913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390913
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390913
    reference: chr 0
allele count: 2
allele frequency: 2.328153192480065e-5
allele num: 85905
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1271G>A
  hgvsp: ENSP00000352093.3:p.Arg424Gln
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.384G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2966G>A
  hgvsp: ENSP00000345629.4:p.Arg989Gln
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3028G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2462G>A
  hgvsp: ENSP00000428356.1:p.Arg821Gln
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13486
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18729
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg989Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-19390914-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390914
    reference: chr 0
allele count: 1
allele frequency: 1.165922419522205e-5
allele num: 85769
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3027C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.383C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2965C>G
  hgvsp: ENSP00000345629.4:p.Arg989Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2461C>G
  hgvsp: ENSP00000428356.1:p.Arg821Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1270C>G
  hgvsp: ENSP00000352093.3:p.Arg424Gly
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13419
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genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
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genotype depth: GenotypeDepth
  all individuals: 1677
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genotype depth: GenotypeDepth
  all individuals: 8084
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 75
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
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genotype quality: GenotypeQuality
  all individuals: 3255
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genotype quality: GenotypeQuality
  all individuals: 2785
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genotype quality: GenotypeQuality
  all individuals: 116
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genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 367
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg989Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-19390919-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390919
    reference: chr 0
allele count: 1
allele frequency: 1.168183358059881e-5
allele num: 85603
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.378A>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2456A>T
  hgvsp: ENSP00000428356.1:p.Glu819Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2960A>T
  hgvsp: ENSP00000345629.4:p.Glu987Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3022A>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1265A>T
  hgvsp: ENSP00000352093.3:p.Glu422Val
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu987Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

X-19390920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390920
    reference: chr 0
allele count: 1
allele frequency: 1.169071056138792e-5
allele num: 85538
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2959G>A
  hgvsp: ENSP00000345629.4:p.Glu987Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1264G>A
  hgvsp: ENSP00000352093.3:p.Glu422Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2455G>A
  hgvsp: ENSP00000428356.1:p.Glu819Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3021G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.377G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 476
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 383
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  variant carriers: 0
hgvs: p.Glu987Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-19390932-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390932
    reference: chr 0
allele count: 2
allele frequency: 2.355546133371022e-5
allele num: 84906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1252A>G
  hgvsp: ENSP00000352093.3:p.Ser418Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2947A>G
  hgvsp: ENSP00000345629.4:p.Ser983Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.365A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2443A>G
  hgvsp: ENSP00000428356.1:p.Ser815Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3009A>G
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
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genotype depth: GenotypeDepth
  all individuals: 8031
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genotype depth: GenotypeDepth
  all individuals: 1880
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
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genotype depth: GenotypeDepth
  all individuals: 535
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 5690
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 20336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser983Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

X-19390936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390936
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390936
    reference: chr 0
allele count: 9
allele frequency: 1.062812201084069e-4
allele num: 84681
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2439C>T
  hgvsp: ENST00000469203.2:c.2439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.361C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1248C>T
  hgvsp: ENST00000359173.3:c.1248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2943C>T
  hgvsp: ENST00000338883.4:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3005C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
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genotype depth: GenotypeDepth
  all individuals: 4933
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genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1880
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genotype depth: GenotypeDepth
  all individuals: 2569
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 209
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1995
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 409
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genotype quality: GenotypeQuality
  all individuals: 43
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genotype quality: GenotypeQuality
  all individuals: 2489
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp981Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-19390938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390938
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390938
    reference: chr 0
allele count: 1
allele frequency: 1.182913990323764e-5
allele num: 84537
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2437G>T
  hgvsp: ENSP00000428356.1:p.Asp813Tyr
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.3003G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.359G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2941G>T
  hgvsp: ENSP00000345629.4:p.Asp981Tyr
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1246G>T
  hgvsp: ENSP00000352093.3:p.Asp416Tyr
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2357
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8023
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
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genotype depth: GenotypeDepth
  all individuals: 723
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17210
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
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genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 386
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2490
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genotype quality: GenotypeQuality
  all individuals: 5640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp981Tyr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

X-19390942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390942
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390942
    reference: chr 0
allele count: 1
allele frequency: 1.185677021579322e-5
allele num: 84340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2999T>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.355T>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1242T>C
  hgvsp: ENST00000359173.3:c.1242T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2937T>C
  hgvsp: ENST00000338883.4:c.2937T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2433T>C
  hgvsp: ENST00000469203.2:c.2433T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1440
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1996
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genotype quality: GenotypeQuality
  all individuals: 3720
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val979Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

X-19390952-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390952
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390952
    reference: chr 0
allele count: 1
allele frequency: 1.192278802475171e-5
allele num: 83873
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-7T>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.345T>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-7T>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-7T>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-7T>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
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genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 78
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genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2934-7T>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

X-19390959-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390959
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390959
    reference: chr 0
allele count: 1
allele frequency: 1.197805620103969e-5
allele num: 83486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-14G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-14G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.338G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-14G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-14G>T
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
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genotype depth: GenotypeDepth
  all individuals: 8322
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2565
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 452
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 963
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genotype depth: GenotypeDepth
  all individuals: 12602
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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genotype depth: GenotypeDepth
  all individuals: 616
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genotype depth: GenotypeDepth
  all individuals: 3134
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2484
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genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 723
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genotype depth: GenotypeDepth
  all individuals: 209
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5471
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genotype quality: GenotypeQuality
  all individuals: 1439
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genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 551
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genotype quality: GenotypeQuality
  all individuals: 70
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genotype quality: GenotypeQuality
  all individuals: 199
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3201
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-19390960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390960
    reference: chr 0
allele count: 3
allele frequency: 3.595527164207726e-5
allele num: 83437
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-15C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-15C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-15C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.337C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-15C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12547
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genotype depth: GenotypeDepth
  all individuals: 3135
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7950
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
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genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
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genotype depth: GenotypeDepth
  all individuals: 963
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1997
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genotype quality: GenotypeQuality
  all individuals: 521
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genotype quality: GenotypeQuality
  all individuals: 1145
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genotype quality: GenotypeQuality
  all individuals: 1438
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2540
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genotype quality: GenotypeQuality
  all individuals: 3197
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genotype quality: GenotypeQuality
  all individuals: 3723
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genotype quality: GenotypeQuality
  all individuals: 2450
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-19390967-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390967
    reference: chr 0
allele count: 1
allele frequency: 1.204064923180658e-5
allele num: 83052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-22T>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-22T>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-22T>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.330T>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-22T>G
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 548
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

X-19390970-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390970
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390970
    reference: chr 0
allele count: 1
allele frequency: 1.207904527226168e-5
allele num: 82788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-25G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-25G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.327G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-25G>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-25G>T
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 536
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 7809
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-19390977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390977
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-32G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-32G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-32G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.320G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-32G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1880
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 630
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genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

X-19390978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390978
    reference: chr 0
allele count: 2
allele frequency: 2.43187704429664e-5
allele num: 82241
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-33C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-33C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-33C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.319C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-33C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1996
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-19390982-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390982
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390982
    reference: chr 0
allele count: 5264
allele frequency: 6.424604869713797e-2
allele num: 81935
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-37G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-37G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.315G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-37G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-37G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 340
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 419
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 311
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 315
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 338
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 213
genotype depth: GenotypeDepth
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  variant carriers: 270
genotype depth: GenotypeDepth
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  variant carriers: 197
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 372
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3903
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 45
num of homozygotes: 392
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

X-19390983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390983
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390983
    reference: chr 0
allele count: 2
allele frequency: 2.444838335065094e-5
allele num: 81805
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-38C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-38C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.314C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-38C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-38C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1353
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num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-19390984-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390984
    reference: chr 0
allele count: 1
allele frequency: 1.222075573153444e-5
allele num: 81828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-39C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.313C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-39C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-39C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
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  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-39C>G
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

X-19390996-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390996
    reference: chr 0
allele count: 1
allele frequency: 1.230299824067125e-5
allele num: 81281
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-51A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-51A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.301A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-51A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-51A>G
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-19390997-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390997
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390997
    reference: chr 0
allele count: 617
allele frequency: 7.59487438299339e-3
allele num: 81239
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-52C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.300C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-52C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-52C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-52C>G
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 15
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-19390997-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019390997
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019390997
    reference: chr 0
allele count: 2
allele frequency: 2.461871761099964e-5
allele num: 81239
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2430-52C>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000470101
  gene symbol: MAP3K15
  hgvsc: ENST00000470101.1:n.300C>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2996-52C>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1239-52C>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2934-52C>A
  variant of: http://identifiers.org/hgnc/31689
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9050
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7403
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-19391612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391612
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391612
    reference: chr 0
allele count: 1
allele frequency: 8.020532563362207e-5
allele num: 12468
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+42T>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+42T>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+42T>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+42T>C
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 808
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 334
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-19391616-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391616
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391616
    reference: chr 0
allele count: 1
allele frequency: 7.992966189753018e-5
allele num: 12511
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+38A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+38A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+38A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+38A>G
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 51
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

X-19391619-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391620
    reference: chr 0
allele count: 2
allele frequency: 1.601024655779699e-4
allele num: 12492
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+34dupC
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+34dupC
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+34dupC
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+34dupC
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 498
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 530
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-19391625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391625
    reference: chr 0
allele count: 3
allele frequency: 2.353310323187951e-4
allele num: 12748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+29G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+29G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+29G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+29G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30320
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

X-19391626-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391626
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391626
    reference: chr 0
allele count: 1
allele frequency: 7.804573480059315e-5
allele num: 12813
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+28C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+28C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+28C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+28C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-19391627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391627
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391627
    reference: chr 0
allele count: 1
allele frequency: 7.81372089388967e-5
allele num: 12798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+27G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+27G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+27G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
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  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+27G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-19391646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391646
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391646
    reference: chr 0
allele count: 1
allele frequency: 7.142857142857143e-5
allele num: 14000
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2933+8C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1238+8C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2429+8C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2995+8C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6053
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.2933+8C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
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X-19391660-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391660
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391660
    reference: chr 0
allele count: 1
allele frequency: 6.71366230278617e-5
allele num: 14895
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1232T>A
  hgvsp: ENSP00000352093.3:p.Leu411His
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2927T>A
  hgvsp: ENSP00000345629.4:p.Leu976His
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2989T>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2423T>A
  hgvsp: ENSP00000428356.1:p.Leu808His
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 215
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genotype quality: GenotypeQuality
  all individuals: 6130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu976His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-19391663-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391663
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391663
    reference: chr 0
allele count: 1
allele frequency: 6.660893891960301e-5
allele num: 15013
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2420A>G
  hgvsp: ENSP00000428356.1:p.His807Arg
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2986A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1229A>G
  hgvsp: ENSP00000352093.3:p.His410Arg
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2924A>G
  hgvsp: ENSP00000345629.4:p.His975Arg
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His975Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

X-19391667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391667
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391667
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15409
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1225G>A
  hgvsp: ENSP00000352093.3:p.Gly409Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2416G>A
  hgvsp: ENSP00000428356.1:p.Gly806Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2982G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2920G>A
  hgvsp: ENSP00000345629.4:p.Gly974Ser
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly974Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS

X-19391671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391671
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2978C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2412C>T
  hgvsp: ENST00000469203.2:c.2412C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1221C>T
  hgvsp: ENST00000359173.3:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2916C>T
  hgvsp: ENST00000338883.4:c.2916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7013
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His972His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-19391671-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391671
    reference: chr 0
allele count: 1
allele frequency: 6.40861317610869e-5
allele num: 15604
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2916C>A
  hgvsp: ENSP00000345629.4:p.His972Gln
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2978C>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2412C>A
  hgvsp: ENSP00000428356.1:p.His804Gln
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1221C>A
  hgvsp: ENSP00000352093.3:p.His407Gln
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His972Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

X-19391677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391677
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391677
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2406G>A
  hgvsp: ENST00000469203.2:c.2406G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2972G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2910G>A
  hgvsp: ENST00000338883.4:c.2910G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1215G>A
  hgvsp: ENST00000359173.3:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8070
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg970Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

X-19391678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391678
    reference: chr 0
allele count: 1
allele frequency: 6.216199415677255e-5
allele num: 16087
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1214G>A
  hgvsp: ENSP00000352093.3:p.Arg405Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2971G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2909G>A
  hgvsp: ENSP00000345629.4:p.Arg970Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2405G>A
  hgvsp: ENSP00000428356.1:p.Arg802Lys
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31716
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg970Lys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-19391682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391682
    reference: chr 0
allele count: 1
allele frequency: 6.130456105934282e-5
allele num: 16312
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2905C>T
  hgvsp: ENSP00000345629.4:p.Pro969Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1210C>T
  hgvsp: ENSP00000352093.3:p.Pro404Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2401C>T
  hgvsp: ENSP00000428356.1:p.Pro801Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2967C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11823
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro969Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-19391684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391684
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391684
    reference: chr 0
allele count: 4
allele frequency: 2.429543245869776e-4
allele num: 16464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2965C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1208C>T
  hgvsp: ENSP00000352093.3:p.Ala403Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2399C>T
  hgvsp: ENSP00000428356.1:p.Ala800Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2903C>T
  hgvsp: ENSP00000345629.4:p.Ala968Val
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala968Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-19391687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391687
    reference: chr 0
allele count: 1
allele frequency: 5.978715771852206e-5
allele num: 16726
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2900G>A
  hgvsp: ENSP00000345629.4:p.Arg967Gln
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2962G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2396G>A
  hgvsp: ENSP00000428356.1:p.Arg799Gln
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1205G>A
  hgvsp: ENSP00000352093.3:p.Arg402Gln
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 218
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg967Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

X-19391688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391688
    reference: chr 0
allele count: 1
allele frequency: 5.920663114268798e-5
allele num: 16890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2961C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1204C>T
  hgvsp: ENSP00000352093.3:p.Arg402Trp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2899C>T
  hgvsp: ENSP00000345629.4:p.Arg967Trp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2395C>T
  hgvsp: ENSP00000428356.1:p.Arg799Trp
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 100
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  variant carriers: 0
hgvs: p.Arg967Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-19391703-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391703
    reference: chr 0
allele count: 1
allele frequency: 5.419760446588261e-5
allele num: 18451
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2946C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2884C>G
  hgvsp: ENSP00000345629.4:p.Leu962Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2380C>G
  hgvsp: ENSP00000428356.1:p.Leu794Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1189C>G
  hgvsp: ENSP00000352093.3:p.Leu397Val
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu962Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-19391707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391707
    reference: chr 0
allele count: 1
allele frequency: 5.198856251624642e-5
allele num: 19235
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2880C>T
  hgvsp: ENST00000338883.4:c.2880C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2376C>T
  hgvsp: ENST00000469203.2:c.2376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2942C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1185C>T
  hgvsp: ENST00000359173.3:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp960Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

X-19391718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391718
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391718
    reference: chr 0
allele count: 5
allele frequency: 2.339290727051558e-4
allele num: 21374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1174G>A
  hgvsp: ENSP00000352093.3:p.Ala392Thr
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2869G>A
  hgvsp: ENSP00000345629.4:p.Ala957Thr
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2931G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2365G>A
  hgvsp: ENSP00000428356.1:p.Ala789Thr
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21855
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23245
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
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genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20182
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala957Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-19391719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391719
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391719
    reference: chr 0
allele count: 21
allele frequency: 9.578980978880628e-4
allele num: 21923
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2364C>T
  hgvsp: ENST00000469203.2:c.2364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2868C>T
  hgvsp: ENST00000338883.4:c.2868C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1173C>T
  hgvsp: ENST00000359173.3:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2930C>T
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23835
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2100
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 116
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genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Asp956Asp
num of homozygotes: 1
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-19391719-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391719
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391719
    reference: chr 0
allele count: 1
allele frequency: 4.56141951375268e-5
allele num: 21923
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2364C>G
  hgvsp: ENSP00000428356.1:p.Asp788Glu
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2930C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2868C>G
  hgvsp: ENSP00000345629.4:p.Asp956Glu
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1173C>G
  hgvsp: ENSP00000352093.3:p.Asp391Glu
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2100
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp956Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

X-19391721-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391721
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391721
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 22452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2928G>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1171G>C
  hgvsp: ENSP00000352093.3:p.Asp391His
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2866G>C
  hgvsp: ENSP00000345629.4:p.Asp956His
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2362G>C
  hgvsp: ENSP00000428356.1:p.Asp788His
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp956His
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-19391721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391721
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391721
    reference: chr 0
allele count: 1
allele frequency: 4.453946196329948e-5
allele num: 22452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2362G>A
  hgvsp: ENSP00000428356.1:p.Asp788Asn
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2866G>A
  hgvsp: ENSP00000345629.4:p.Asp956Asn
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1171G>A
  hgvsp: ENSP00000352093.3:p.Asp391Asn
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2928G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24559
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 394
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19393
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 968
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp956Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-19391722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391722
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391722
    reference: chr 0
allele count: 58
allele frequency: 2.524153538166942e-3
allele num: 22978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2927C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2865C>T
  hgvsp: ENST00000338883.4:c.2865C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2361C>T
  hgvsp: ENST00000469203.2:c.2361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1170C>T
  hgvsp: ENST00000359173.3:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 25
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1203
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genotype quality: GenotypeQuality
  all individuals: 212
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser955Ser
num of homozygotes: 2
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-19391730-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391730
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391730
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 26088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2353C>G
  hgvsp: ENSP00000428356.1:p.Pro785Ala
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1162C>G
  hgvsp: ENSP00000352093.3:p.Pro388Ala
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2919C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2857C>G
  hgvsp: ENSP00000345629.4:p.Pro953Ala
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
hgvs: p.Pro953Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

X-19391736-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391734
    reference: chr 0
allele count: 1
allele frequency: 3.532819896841659e-5
allele num: 28306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1154_1155delCT
  hgvsp: ENSP00000352093.3:p.Ser385CysfsTer10
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2345_2346delCT
  hgvsp: ENSP00000428356.1:p.Ser782CysfsTer10
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2911_2912delCT
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2849_2850delCT
  hgvsp: ENSP00000345629.4:p.Ser950CysfsTer10
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10223
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser950CysfsTer10
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: CAG
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-19391742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391742
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391742
    reference: chr 0
allele count: 6
allele frequency: 1.932304917716016e-4
allele num: 31051
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2341G>A
  hgvsp: ENSP00000428356.1:p.Gly781Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2845G>A
  hgvsp: ENSP00000345629.4:p.Gly949Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1150G>A
  hgvsp: ENSP00000352093.3:p.Gly384Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2907G>A
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 937
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Gly949Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

X-19391743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391743
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391743
    reference: chr 0
allele count: 58
allele frequency: 1.819722021773915e-3
allele num: 31873
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2844C>T
  hgvsp: ENST00000338883.4:c.2844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2340C>T
  hgvsp: ENST00000469203.2:c.2340C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2906C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1149C>T
  hgvsp: ENST00000359173.3:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 234
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hgvs: p.His948His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-19391748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391748
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391748
    reference: chr 0
allele count: 4
allele frequency: 1.163162639216028e-4
allele num: 34389
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2839G>A
  hgvsp: ENSP00000345629.4:p.Glu947Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2901G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1144G>A
  hgvsp: ENSP00000352093.3:p.Glu382Lys
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2335G>A
  hgvsp: ENSP00000428356.1:p.Glu779Lys
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu947Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

X-19391749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391749
    reference: chr 0
allele count: 4
allele frequency: 1.140055862737274e-4
allele num: 35086
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2838C>T
  hgvsp: ENST00000338883.4:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2900C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2334C>T
  hgvsp: ENST00000469203.2:c.2334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1143C>T
  hgvsp: ENST00000359173.3:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser946Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-19391750-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391750
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391749
    reference: chr 0
allele count: 2
allele frequency: 5.571030640668524e-5
allele num: 35900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1141delA
  hgvsp: ENSP00000352093.3:p.Ser381AlafsTer110
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2332delA
  hgvsp: ENSP00000428356.1:p.Ser778AlafsTer110
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2898delA
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2836delA
  hgvsp: ENSP00000345629.4:p.Ser946AlafsTer110
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28602
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 22
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genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 46
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 82
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27244
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genotype quality: GenotypeQuality
  all individuals: 257
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genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 746
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13577
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 9611
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 258
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genotype quality: GenotypeQuality
  all individuals: 884
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genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 469
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser946AlafsTer110
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: CT
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-19391751-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391751
    reference: chr 0
allele count: 1
allele frequency: 2.727619878893677e-5
allele num: 36662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2332A>G
  hgvsp: ENSP00000428356.1:p.Ser778Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2836A>G
  hgvsp: ENSP00000345629.4:p.Ser946Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1141A>G
  hgvsp: ENSP00000352093.3:p.Ser381Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2898A>G
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser946Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-19391759-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391759
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391759
    reference: chr 0
allele count: 1
allele frequency: 2.464632523290777e-5
allele num: 40574
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2828C>G
  hgvsp: ENSP00000345629.4:p.Thr943Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2890C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1133C>G
  hgvsp: ENSP00000352093.3:p.Thr378Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2324C>G
  hgvsp: ENSP00000428356.1:p.Thr775Ser
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1175
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  variant carriers: 0
hgvs: p.Thr943Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

X-19391761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391761
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391761
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 41682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2888C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2322C>T
  hgvsp: ENST00000469203.2:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2826C>T
  hgvsp: ENST00000338883.4:c.2826C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1131C>T
  hgvsp: ENST00000359173.3:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala942Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-19391766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391766
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391766
    reference: chr 0
allele count: 3
allele frequency: 6.76102046335527e-5
allele num: 44372
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2821A>G
  hgvsp: ENSP00000345629.4:p.Met941Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2883A>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2317A>G
  hgvsp: ENSP00000428356.1:p.Met773Val
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1126A>G
  hgvsp: ENSP00000352093.3:p.Met376Val
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6254
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met941Val
num of homozygotes: 1
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-19391770-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391770
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 46259
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2313G>T
  hgvsp: ENSP00000428356.1:p.Glu771Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1122G>T
  hgvsp: ENSP00000352093.3:p.Glu374Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2817G>T
  hgvsp: ENSP00000345629.4:p.Glu939Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2879G>T
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 26602
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26268
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  variant carriers: 0
hgvs: p.Glu939Asp
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-19391770-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391770
    reference: chr 0
allele count: 1
allele frequency: 2.161741498951555e-5
allele num: 46259
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1122G>C
  hgvsp: ENSP00000352093.3:p.Glu374Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2879G>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2313G>C
  hgvsp: ENSP00000428356.1:p.Glu771Asp
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2817G>C
  hgvsp: ENSP00000345629.4:p.Glu939Asp
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu939Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-19391784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391784
    reference: chr 0
allele count: 1
allele frequency: 1.92845434384341e-5
allele num: 51855
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2299C>T
  hgvsp: ENSP00000428356.1:p.Pro767Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2865C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2803C>T
  hgvsp: ENSP00000345629.4:p.Pro935Ser
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1108C>T
  hgvsp: ENSP00000352093.3:p.Pro370Ser
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50
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hgvs: p.Pro935Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-19391791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391791
    reference: chr 0
allele count: 1
allele frequency: 1.840739240879137e-5
allele num: 54326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2858G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1101G>A
  hgvsp: ENST00000359173.3:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2796G>A
  hgvsp: ENST00000338883.4:c.2796G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2292G>A
  hgvsp: ENST00000469203.2:c.2292G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu932Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

X-19391794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391794
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391794
    reference: chr 0
allele count: 1
allele frequency: 1.816629425763438e-5
allele num: 55047
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2289C>T
  hgvsp: ENST00000469203.2:c.2289C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2855C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1098C>T
  hgvsp: ENST00000359173.3:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2793C>T
  hgvsp: ENST00000338883.4:c.2793C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1080
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genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24665
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 745
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val931Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS

X-19391795-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391795
    reference: chr 0
allele count: 1
allele frequency: 1.814947910994954e-5
allele num: 55098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1097T>G
  hgvsp: ENSP00000352093.3:p.Val366Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2288T>G
  hgvsp: ENSP00000428356.1:p.Val763Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2792T>G
  hgvsp: ENSP00000345629.4:p.Val931Gly
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2854T>G
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3554
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val931Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

X-19391796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391796
    reference: chr 0
allele count: 4
allele frequency: 7.242702976750923e-5
allele num: 55228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2791G>A
  hgvsp: ENSP00000345629.4:p.Val931Ile
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2287G>A
  hgvsp: ENSP00000428356.1:p.Val763Ile
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2853G>A
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1096G>A
  hgvsp: ENSP00000352093.3:p.Val366Ile
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val931Ile
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-19391797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391797
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391797
    reference: chr 0
allele count: 7
allele frequency: 1.264199671308086e-4
allele num: 55371
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2790C>T
  hgvsp: ENST00000338883.4:c.2790C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2286C>T
  hgvsp: ENST00000469203.2:c.2286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2852C>T
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1095C>T
  hgvsp: ENST00000359173.3:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22951
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20261
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24629
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22838
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val930Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

X-19391797-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391797
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391797
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 55371
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2852C>G
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2790C>G
  hgvsp: ENST00000338883.4:c.2790C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2286C>G
  hgvsp: ENST00000469203.2:c.2286C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1095C>G
  hgvsp: ENST00000359173.3:c.1095C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22951
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24629
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val930Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-19391800-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24019391800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24019391800
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 55721
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000345629
  ensembl transcript: ENST00000338883
  gene symbol: MAP3K15
  hgvsc: ENST00000338883.4:c.2787T>C
  hgvsp: ENST00000338883.4:c.2787T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000428356
  ensembl transcript: ENST00000469203
  gene symbol: MAP3K15
  hgvsc: ENST00000469203.2:c.2283T>C
  hgvsp: ENST00000469203.2:c.2283T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180815
  ensembl transcript: ENST00000518578
  gene symbol: MAP3K15
  hgvsc: ENST00000518578.1:n.2849T>C
  variant of: http://identifiers.org/hgnc/31689
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180815
  ensembl protein: ENSP00000352093
  ensembl transcript: ENST00000359173
  gene symbol: MAP3K15
  hgvsc: ENST00000359173.3:c.1092T>C
  hgvsp: ENST00000359173.3:c.1092T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31689
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly929Gly
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20351
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9503
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507840772014475e-4
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47694
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.152e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

DP
type: SiteQuality
SIO_000300: 2.231812e6

QD
type: SiteQuality
SIO_000300: 2.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.859999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20357
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.055074910318633e-4
allele num: 9478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.726738820370836e-4
allele num: 47676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073652566029633e-4
allele num: 9314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.779e1

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

FS
type: SiteQuality
SIO_000300: 4.968e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.23169e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.219e0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5811
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.520690669243373e-4
allele num: 47606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.612903225806452e-3
allele num: 620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 1.105e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.973e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 2.224636e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.49e0

MQ
type: SiteQuality
SIO_000300: 5.994e1

QD
type: SiteQuality
SIO_000300: 1.663e1

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20352
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100575557702811e-5
allele num: 47606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.663e1

FS
type: SiteQuality
SIO_000300: 1.105e0

DP
type: SiteQuality
SIO_000300: 2.224636e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.973e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.994e1

GenotypeQuality
all individuals: 20500
bin: 9.75e1
variant carriers: 356

GenotypeQuality
all individuals: 2543
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1982
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 7.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.68056635086024e-4
allele num: 47603
num of homozygotes: 0

African
type: Population
allele count: 351
allele frequency: 4.129897635015884e-2
allele num: 8499
num of homozygotes: 2

Latino
type: Population
allele count: 21
allele frequency: 2.255639097744361e-3
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.073998496402105e-4
allele num: 9311
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508523155830442e-4
allele num: 6629
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 1.711e1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e1

DP
type: SiteQuality
SIO_000300: 2.240766e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.159e-1

GenotypeQuality
all individuals: 294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47579
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.526252263126131e-4
allele num: 6628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

FS
type: SiteQuality
SIO_000300: 2.297e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.733e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 2.222298e6

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47447
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.017501508750754e-4
allele num: 6628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8981
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178828244724744e-4
allele num: 8483
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.344e0

QD
type: SiteQuality
SIO_000300: 1.68e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 2.212632e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.389e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: -1.897e0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20338
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510117789187557e-4
allele num: 6622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47429
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8935
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

FS
type: SiteQuality
SIO_000300: 4.525e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
SIO_000300: 1.626e1

DP
type: SiteQuality
SIO_000300: 2.210775e6

GenotypeQuality
all individuals: 5745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.110194348899534e-5
allele num: 47389
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

DP
type: SiteQuality
SIO_000300: 2.207861e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 2.763e0

QD
type: SiteQuality
SIO_000300: 1.279e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.58e-1

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20336
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.143772160585611e-4
allele num: 8743
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.231e1

DP
type: SiteQuality
SIO_000300: 2.203964e6

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.149293184691415e-4
allele num: 8701
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47315
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

QD
type: SiteQuality
SIO_000300: 3.373e1

DP
type: SiteQuality
SIO_000300: 2.202793e6

VQSLOD
type: SiteQuality
SIO_000300: -4.275e-1

GenotypeQuality
all individuals: 1996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17621
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8459
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.243581582855931e-5
allele num: 47130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.48e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.190345e6

FS
type: SiteQuality
SIO_000300: 6.823e0

QD
type: SiteQuality
SIO_000300: 1.518e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
all individuals: 3233
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20335
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 5661
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.450980392156863e-4
allele num: 8160
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183011948420679e-4
allele num: 8453
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.275374641300882e-4
allele num: 47045
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.651e0

QD
type: SiteQuality
SIO_000300: 2.037e1

DP
type: SiteQuality
SIO_000300: 2.186298e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
all individuals: 20333
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47009
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8445
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075962986873252e-4
allele num: 9294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8065
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.163e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.515e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

DP
type: SiteQuality
SIO_000300: 2.183209e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.662e0

FS
type: SiteQuality
SIO_000300: 2.824e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20332
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.12938120182275e-5
allele num: 46962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

QD
type: SiteQuality
SIO_000300: 3.337e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.178882e6

VQSLOD
type: SiteQuality
SIO_000300: -3.853e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

GenotypeQuality
all individuals: 499
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20329
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.136386942403008e-5
allele num: 46808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7657
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.807e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

FS
type: SiteQuality
SIO_000300: 2.597e0

DP
type: SiteQuality
SIO_000300: 2.169646e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.743e0

GenotypeQuality
all individuals: 2542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16300
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.188919272381405e-4
allele num: 8411
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7419
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46677
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.523e1

VQSLOD
type: SiteQuality
SIO_000300: -6.502e-1

FS
type: SiteQuality
SIO_000300: 6.473e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 2.161725e6

MQ
type: SiteQuality
SIO_000300: 5.858e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16189
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.154940200409439e-4
allele num: 9281
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.143071450002143e-5
allele num: 46662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.345e0

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

DP
type: SiteQuality
SIO_000300: 2.159684e6

QD
type: SiteQuality
SIO_000300: 2.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 652
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5355
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7169
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.149335855220737e-5
allele num: 46526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8397
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.672e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 2.145785e6

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 20327
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.153594348968428e-5
allele num: 46434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.12e0

QD
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.13942e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.265e0

FS
type: SiteQuality
SIO_000300: 1.147e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

GenotypeQuality
all individuals: 2524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9267
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8373
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.101e1

DP
type: SiteQuality
SIO_000300: 2.120298e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.492e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

GenotypeQuality
all individuals: 2524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20330
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.162676528471636e-5
allele num: 46239
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6705
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

DP
type: SiteQuality
SIO_000300: 2.119729e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

GenotypeQuality
all individuals: 1191
bin: 3.25e1
variant carriers: 65

GenotypeQuality
all individuals: 2419
bin: 8.25e1
variant carriers: 130

GenotypeQuality
all individuals: 2951
bin: 7.75e1
variant carriers: 119

GenotypeQuality
all individuals: 1929
bin: 9.25e1
variant carriers: 118

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 64

Latino
type: Population
allele count: 263
allele frequency: 2.840786346943184e-2
allele num: 9258
num of homozygotes: 2

East Asian
type: Population
allele count: 19
allele frequency: 2.890173410404624e-3
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 941
allele frequency: 1.425757575757576e-1
allele num: 6600
num of homozygotes: 39

African
type: Population
allele count: 2654
allele frequency: 3.184927397095884e-1
allele num: 8333
num of homozygotes: 335

European (Non-Finnish)
type: Population
allele count: 1243
allele frequency: 2.695026234768657e-2
allele num: 46122
num of homozygotes: 15

European (Finnish)
type: Population
allele count: 121
allele frequency: 2.701495869613753e-2
allele num: 4479
num of homozygotes: 1

Other
type: Population
allele count: 23
allele frequency: 4.042179261862917e-2
allele num: 569
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.958e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 2.118e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

DP
type: SiteQuality
SIO_000300: 2.162443e6

GenotypeQuality
all individuals: 2003
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51952590791673e-4
allele num: 6581
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6509
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.201778632375916e-4
allele num: 8321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46067
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 1.1675e1

QD
type: SiteQuality
SIO_000300: 1.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.379e0

DP
type: SiteQuality
SIO_000300: 2.116755e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 1428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46083
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.617e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.84e0

QD
type: SiteQuality
SIO_000300: 3.122e1

DP
type: SiteQuality
SIO_000300: 2.113714e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

GenotypeQuality
all individuals: 20356
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 961
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7150
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180644598543329e-5
allele num: 45858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.961e0

QD
type: SiteQuality
SIO_000300: 1.494e1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

DP
type: SiteQuality
SIO_000300: 2.093756e6

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1055
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1172
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1449
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2220
bin: 4.75e1
variant carriers: 11

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

African
type: Population
allele count: 580
allele frequency: 7.017543859649122e-2
allele num: 8265
num of homozygotes: 15

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.728478844349401e-5
allele num: 45827
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4479
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 7.104795737122558e-3
allele num: 563
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 3.138528138528138e-3
allele num: 9240
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.094816e6

VQSLOD
type: SiteQuality
SIO_000300: 1.134e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

QD
type: SiteQuality
SIO_000300: 1.661e1

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.419842710223835e-4
allele num: 8265
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45827
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 2.094816e6

QD
type: SiteQuality
SIO_000300: 1.661e1

VQSLOD
type: SiteQuality
SIO_000300: 1.134e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2269
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.272251308900524e-4
allele num: 3056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 293
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.76297e5

QD
type: SiteQuality
SIO_000300: 2.228e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.91e-2

MQ
type: SiteQuality
SIO_000300: 5.695e1

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3073
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.407227853680035e-4
allele num: 2269
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 519
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.05e1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

DP
type: SiteQuality
SIO_000300: 2.80314e5

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6199
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 515
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 6.527415143603133e-4
allele num: 3064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.683e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.588e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.83569e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.63e-2

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 9.369144284821987e-4
allele num: 3202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2299
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6279
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.942e0

DP
type: SiteQuality
SIO_000300: 2.95228e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.821e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.57e-2

QD
type: SiteQuality
SIO_000300: 1.869e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 521
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2297
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.071253071253071e-4
allele num: 3256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 295
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.789e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.99e0

DP
type: SiteQuality
SIO_000300: 2.97189e5

QD
type: SiteQuality
SIO_000300: 2.079e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.62e-2

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587301587301587e-4
allele num: 6300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3239
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.227e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.45e1

DP
type: SiteQuality
SIO_000300: 3.00361e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.712e0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6713
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 133
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.215851602023609e-4
allele num: 2372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 307
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3901
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

FS
type: SiteQuality
SIO_000300: 3.152e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.21e-2

DP
type: SiteQuality
SIO_000300: 3.49011e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 2.337e1

GenotypeQuality
all individuals: 756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 317
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.290950744558992e-4
allele num: 4365
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2427
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 137
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.83197e5

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.738e0

VQSLOD
type: SiteQuality
SIO_000300: -1.778e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.02e-2

QD
type: SiteQuality
SIO_000300: 1.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

GenotypeQuality
all individuals: 29318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2439
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.265518803806072e-4
allele num: 4414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7067
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.78e1

FS
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: -2.086e0

DP
type: SiteQuality
SIO_000300: 3.9028e5

GenotypeQuality
all individuals: 213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6778
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2473
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4545
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 343
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 143
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.243e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.69e-2

DP
type: SiteQuality
SIO_000300: 4.02129e5

QD
type: SiteQuality
SIO_000300: 2.176e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 143
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.11285e5

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.131e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.09e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.484e1

GenotypeQuality
all individuals: 894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.367240907847963e-4
allele num: 7314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4619
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 143
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.131e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.09e-2

DP
type: SiteQuality
SIO_000300: 4.11285e5

QD
type: SiteQuality
SIO_000300: 1.484e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 357
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2545
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 145
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.24205e5

QD
type: SiteQuality
SIO_000300: 1.432e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.370000000000001e-2

GenotypeQuality
all individuals: 7280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2551
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.324503311258278e-4
allele num: 7550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.393e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 4.27125e5

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 367
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2577
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.307873397855088e-4
allele num: 7646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.433e-1

DP
type: SiteQuality
SIO_000300: 4.34456e5

FS
type: SiteQuality
SIO_000300: 3.523e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

GenotypeQuality
all individuals: 1317
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 73
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.754820936639119e-3
allele num: 363
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2607
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4799
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.883997928534438e-4
allele num: 7724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.636e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 5.636e0

VQSLOD
type: SiteQuality
SIO_000300: -9.012e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.42262e5

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
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variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.274047649382087e-4
allele num: 7849
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2651
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 797
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 85
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.627e1

VQSLOD
type: SiteQuality
SIO_000300: -1.843e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 4.51845e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.333e0

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28361
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.064409578860446e-4
allele num: 4844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 805
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2673
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 147
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.56051e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -2.614e0

QD
type: SiteQuality
SIO_000300: 2.553e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4951
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.560229445506692e-4
allele num: 1046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 449
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 141
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8860
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.833e1

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

DP
type: SiteQuality
SIO_000300: 4.95441e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.521e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7899
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.865671641791045e-3
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 5.08778e5

QD
type: SiteQuality
SIO_000300: 1.253e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.164e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3149
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5145
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 665
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 265
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 2.724795640326975e-3
allele num: 1468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.50660709192889e-5
allele num: 10519
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 5.46787e5

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 2

GenotypeQuality
all individuals: 803
bin: 3.25e1
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GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 287
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1547
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 4.047802621434078e-3
allele num: 5188
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.119e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.427999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

DP
type: SiteQuality
SIO_000300: 5.55186e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 2.124e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1547
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.233610341643582e-5
allele num: 10830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 5.55186e5

VQSLOD
type: SiteQuality
SIO_000300: -5.427999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

FS
type: SiteQuality
SIO_000300: 1.119e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 840
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1613
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.303e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 1.2175e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

DP
type: SiteQuality
SIO_000300: 5.64173e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.944543828264758e-5
allele num: 11180
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3259
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 5.64173e5

VQSLOD
type: SiteQuality
SIO_000300: -1.303e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.073e0

QD
type: SiteQuality
SIO_000300: 1.403e1

FS
type: SiteQuality
SIO_000300: 1.2175e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.535947712418301e-3
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 9.093664746892998e-4
allele num: 3299
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 3.768844221105527e-3
allele num: 796
num of homozygotes: 0

South Asian
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allele count: 11
allele frequency: 2.095637264240808e-3
allele num: 5249
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 39
allele frequency: 3.395733565520244e-3
allele num: 11485
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1675
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

DP
type: SiteQuality
SIO_000300: 5.72558e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.743e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 461
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 6.12452e5

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.15e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.345e0

QD
type: SiteQuality
SIO_000300: 2.028e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.34593654932638e-4
allele num: 2301
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.006e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.717e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.35597e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4053
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.751006828926633e-4
allele num: 5711
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1571
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.205128205128205e-3
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 213
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.837897445322551e-4
allele num: 16323
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.68322e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.25e1

VQSLOD
type: SiteQuality
SIO_000300: -1.087e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 5.706e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5733
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 217
num of homozygotes: 0

African
type: Population
allele count: 53
allele frequency: 1.288283908604764e-2
allele num: 4114
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.20627261761158e-3
allele num: 1658
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.799392097264438e-4
allele num: 2632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.185747317246695e-4
allele num: 16867
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 6.80003e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2893
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.71291538198013e-4
allele num: 5838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 751
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.632297731106154e-4
allele num: 18379
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1998
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 231
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VQSLOD
type: SiteQuality
SIO_000300: -1.038e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

QD
type: SiteQuality
SIO_000300: 2.479e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

DP
type: SiteQuality
SIO_000300: 7.05737e5

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5873
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 766
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2946
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European (Non-Finnish)
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allele count: 3
allele frequency: 1.595914458984998e-4
allele num: 18798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2108
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African
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allele count: 1
allele frequency: 2.294104152328516e-4
allele num: 4359
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.038098204090107e-4
allele num: 19266
num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 0.0e0
allele num: 2228
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 237
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2341
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.194743130227001e-3
allele num: 837
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22134
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Other
type: Population
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allele frequency: 0.0e0
allele num: 264
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Latino
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allele frequency: 0.0e0
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African
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allele num: 4776
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South Asian
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3535
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4879
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 269
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6155
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22783
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1001
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 3.102e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.931e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

DP
type: SiteQuality
SIO_000300: 7.8545e5

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3749
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.792332268370607e-4
allele num: 6260
num of homozygotes: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5036
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.14289e5

QD
type: SiteQuality
SIO_000300: 2.795e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 257
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3929
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6331
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5185
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1213
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25487
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

FS
type: SiteQuality
SIO_000300: 4.608e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

QD
type: SiteQuality
SIO_000300: 1.358e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.741e0

DP
type: SiteQuality
SIO_000300: 8.35162e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 50
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.923568878251658e-5
allele num: 25487
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3929
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5185
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6331
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1213
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.608e0

QD
type: SiteQuality
SIO_000300: 1.358e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

MQRankSum
type: SiteQuality
SIO_000300: -1.741e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 8.35162e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4771
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.481651695564376e-5
allele num: 28722
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6523
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 337
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.043e0

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.598e0

FS
type: SiteQuality
SIO_000300: 2.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.963e0

DP
type: SiteQuality
SIO_000300: 9.01315e5

MQ
type: SiteQuality
SIO_000300: 5.816e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.026e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22973
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GenotypeQuality
all individuals: 650
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5233
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5807
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30125
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

FS
type: SiteQuality
SIO_000300: 4.452e0

QD
type: SiteQuality
SIO_000300: 1.19e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.26124e5

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 371
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5381
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.711156741957563e-4
allele num: 5844
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.098e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.409e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 9.30188e5

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 4.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.710571330824495e-4
allele num: 5846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4697
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 371
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

DP
type: SiteQuality
SIO_000300: 9.2878e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
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allele num: 5432
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Other
type: Population
allele count: 0
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allele num: 370
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African
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allele frequency: 3.413551800648575e-4
allele num: 5859
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 4699
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30667
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1628
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South Asian
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allele count: 2
allele frequency: 3.042750646584512e-4
allele num: 6573
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.461e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.31054e5

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 1.827819411442149e-4
allele num: 5471
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.127206977238885e-4
allele num: 4701
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.755463059313215e-5
allele num: 30752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 369
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African
type: Population
allele count: 2
allele frequency: 3.405994550408719e-4
allele num: 5872
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
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QD
type: SiteQuality
SIO_000300: 1.343e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 9.29537e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 369
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30752
num of homozygotes: 0

Latino
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South Asian
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allele num: 6562
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1644
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East Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
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