17-73753152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753152
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753152
    reference: chr 17
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4972C>T
  hgvsp: ENSP00000463651.1:p.Arg1658Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+963G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5182C>T
  hgvsp: ENSP00000200181.3:p.Arg1728Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-555C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.33C>T
  hgvsp: ENSP00000462494.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4972C>T
  hgvsp: ENSP00000405536.3:p.Arg1658Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5131C>T
  hgvsp: ENSP00000344079.3:p.Arg1711Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5131C>T
  hgvsp: ENSP00000400217.2:p.Arg1711Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+963G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1728Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

17-73753153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753153
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753153
    reference: chr 17
allele count: 4
allele frequency: 3.333000033330001e-5
allele num: 120012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4973G>A
  hgvsp: ENSP00000405536.3:p.Arg1658His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5132G>A
  hgvsp: ENSP00000400217.2:p.Arg1711His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5132G>A
  hgvsp: ENSP00000344079.3:p.Arg1711His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5183G>A
  hgvsp: ENSP00000200181.3:p.Arg1728His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-554G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.34G>A
  hgvsp: ENSP00000462494.1:p.Arg12His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4973G>A
  hgvsp: ENSP00000463651.1:p.Arg1658His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+962C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+962C>T
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1728His
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-73753154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753154
    reference: chr 17
allele count: 12
allele frequency: 9.998666844420744e-5
allele num: 120016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5133C>T
  hgvsp: ENST00000449880.2:c.5133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4974C>T
  hgvsp: ENST00000450894.3:c.4974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+961G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-553C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4974C>T
  hgvsp: ENST00000579662.1:c.4974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5133C>T
  hgvsp: ENST00000339591.3:c.5133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.35C>T
  hgvsp: ENST00000578318.1:c.35C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5184C>T
  hgvsp: ENST00000200181.3:c.5184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+961G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16514
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1728Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

17-73753160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753160
    reference: chr 17
allele count: 1
allele frequency: 8.329585020074299e-6
allele num: 120054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+955G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+955G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5139C>T
  hgvsp: ENST00000449880.2:c.5139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4980C>T
  hgvsp: ENST00000579662.1:c.4980C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5190C>T
  hgvsp: ENST00000200181.3:c.5190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-547C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4980C>T
  hgvsp: ENST00000450894.3:c.4980C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5139C>T
  hgvsp: ENST00000339591.3:c.5139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.41C>T
  hgvsp: ENST00000578318.1:c.41C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7236
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1730Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-73753172-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753172
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753172
    reference: chr 17
allele count: 1
allele frequency: 8.326533331112925e-6
allele num: 120098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4992A>G
  hgvsp: ENSP00000463651.1:p.Ile1664Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5151A>G
  hgvsp: ENSP00000400217.2:p.Ile1717Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.53A>G
  hgvsp: ENSP00000462494.1:p.Ile18Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+943T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5202A>G
  hgvsp: ENSP00000200181.3:p.Ile1734Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5151A>G
  hgvsp: ENSP00000344079.3:p.Ile1717Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4992A>G
  hgvsp: ENSP00000405536.3:p.Ile1664Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+943T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-535A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile1734Met
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73753175-G-GTACC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753175
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753179
    reference: chr 17
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: GTACC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4996_4997insACCT
  hgvsp: ENSP00000405536.3:p.Ser1666TyrfsTer78
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.57_58insACCT
  hgvsp: ENSP00000462494.1:p.Ser20TyrfsTer44
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5155_5156insACCT
  hgvsp: ENSP00000344079.3:p.Ser1719TyrfsTer78
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4996_4997insACCT
  hgvsp: ENSP00000463651.1:p.Ser1666TyrfsTer78
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5206_5207insACCT
  hgvsp: ENSP00000200181.3:p.Ser1736TyrfsTer78
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+939_254+940insGGTA
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+939_*22+940insGGTA
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-531_266-530insACCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5155_5156insACCT
  hgvsp: ENSP00000400217.2:p.Ser1719TyrfsTer78
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1736TyrfsTer78
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-73753178-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753178
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753178
    reference: chr 17
allele count: 2
allele frequency: 1.665223472990075e-5
allele num: 120104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-529C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+937G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.4998C>G
  hgvsp: ENST00000579662.1:c.4998C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5157C>G
  hgvsp: ENST00000449880.2:c.5157C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5157C>G
  hgvsp: ENST00000339591.3:c.5157C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+937G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.4998C>G
  hgvsp: ENST00000450894.3:c.4998C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5208C>G
  hgvsp: ENST00000200181.3:c.5208C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.59C>G
  hgvsp: ENST00000578318.1:c.59C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1736Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

17-73753178-CCAGGATGGAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753178
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753167
    reference: chr 17
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7240
  bin: 6.75e1
  variant carriers: 0
hgvs: c.5209_5218+1delCAGGATGGAGG
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: CCAGGATGGAGG
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

17-73753182-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753182
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753182
    reference: chr 17
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5212G>T
  hgvsp: ENSP00000200181.3:p.Asp1738Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5161G>T
  hgvsp: ENSP00000400217.2:p.Asp1721Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+933C>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5161G>T
  hgvsp: ENSP00000344079.3:p.Asp1721Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5002G>T
  hgvsp: ENSP00000463651.1:p.Asp1668Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5002G>T
  hgvsp: ENSP00000405536.3:p.Asp1668Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-525G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+933C>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.63G>T
  hgvsp: ENSP00000462494.1:p.Asp22Tyr
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18584
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp1738Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-73753190-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753190
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753190
    reference: chr 17
allele count: 1
allele frequency: 8.327226700419692e-6
allele num: 120088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+2T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+2T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+2T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+925A>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+2T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-517T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+2T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+2T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+925A>T
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: c.5218+2T>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

17-73753194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753194
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753194
    reference: chr 17
allele count: 3
allele frequency: 2.49804319949373e-5
allele num: 120094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+6C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+6C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+6C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-513C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+6C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+921G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+6C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+921G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+6C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
hgvs: c.5218+6C>T
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-73753198-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753198
    reference: chr 17
allele count: 1
allele frequency: 8.329030001166064e-6
allele num: 120062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+10T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+10T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-509T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+10T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+917A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+10T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+10T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+10T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+917A>G
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

17-73753200-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753200
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753200
    reference: chr 17
allele count: 72
allele frequency: 5.997700881328824e-4
allele num: 120046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+12T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+12T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-507T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+12T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+12T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+12T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+12T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+915A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+915A>G
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13620
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73753203-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753203
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753203
    reference: chr 17
allele count: 3
allele frequency: 2.499083669321249e-5
allele num: 120044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+15T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+15T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+15T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+912A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+912A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+15T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+15T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+15T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-504T>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

17-73753208-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753208
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753208
    reference: chr 17
allele count: 2
allele frequency: 1.666388935177471e-5
allele num: 120020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+20T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+20T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+20T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+20T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-499T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+20T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+20T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+907A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+907A>G
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4068
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-73753212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753212
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753212
    reference: chr 17
allele count: 14
allele frequency: 1.167075142966705e-4
allele num: 119958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-495C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+903G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+903G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+24C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

17-73753214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753214
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753214
    reference: chr 17
allele count: 1
allele frequency: 8.340840089413805e-6
allele num: 119892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-493C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+26C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+26C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+26C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+26C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+26C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+901G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+26C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+901G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-73753219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753219
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753219
    reference: chr 17
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+31C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+896G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-488C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+31C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+31C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+896G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+31C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+31C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+31C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

17-73753221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753221
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753221
    reference: chr 17
allele count: 361
allele frequency: 3.013607145838551e-3
allele num: 119790
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-486C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+894G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+894G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+33C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13464
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 9.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 7116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18725
  bin: 9.75e1
  variant carriers: 359
genotype quality: GenotypeQuality
  all individuals: 4349
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-73753225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753225
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753225
    reference: chr 17
allele count: 1
allele frequency: 8.350591221858508e-6
allele num: 119752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+37T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+37T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-482T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+37T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+37T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+37T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+37T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+890A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+890A>G
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-73753226-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753226
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753226
    reference: chr 17
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-481C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+38C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+38C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+38C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+38C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+889G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+38C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+889G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+38C>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-73753227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753227
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753227
    reference: chr 17
allele count: 1
allele frequency: 8.352683717278361e-6
allele num: 119722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-480G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+888C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+39G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+39G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+39G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+39G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+39G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+888C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+39G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

17-73753229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753229
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753229
    reference: chr 17
allele count: 1
allele frequency: 8.350312301680083e-6
allele num: 119756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+41G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+41G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+41G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+41G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+886C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+41G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-478G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+886C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+41G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

17-73753231-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753231
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753231
    reference: chr 17
allele count: 9
allele frequency: 7.515155563720169e-5
allele num: 119758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-476C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+884G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+43C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+43C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+43C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+43C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+43C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+43C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+884G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13608
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-73753232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753232
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753232
    reference: chr 17
allele count: 42
allele frequency: 3.507014028056112e-4
allele num: 119760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+883C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.69+44G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+883C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5008+44G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5218+44G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5167+44G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5008+44G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-475G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5167+44G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-73753238-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753238
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753235
    reference: chr 17
allele count: 4
allele frequency: 3.339957582538702e-5
allele num: 119762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+874_254+876delAAG
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-40_70-38delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-40_5009-38delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-40_5168-38delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-466_266-464delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-40_5009-38delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-40_5219-38delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-40_5168-38delTCT
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+874_*22+876delAAG
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: CCTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-73753253-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753253
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753253
    reference: chr 17
allele count: 1
allele frequency: 8.352544184958738e-6
allele num: 119724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-28C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-28C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-28C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-28C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+862G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+862G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-28C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-28C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-454C>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13563
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18486
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-73753256-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753256
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753256
    reference: chr 17
allele count: 1
allele frequency: 8.354498061756449e-6
allele num: 119696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-25T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+859A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-451T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+859A>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-25T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-25T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-25T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-25T>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-25T>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-73753258-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753258
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753258
    reference: chr 17
allele count: 1
allele frequency: 8.354916868577158e-6
allele num: 119690
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-23A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-23A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-23A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+857T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-449A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-23A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-23A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+857T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-23A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16042
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

17-73753259-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753259
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753259
    reference: chr 17
allele count: 2
allele frequency: 1.671095068598453e-5
allele num: 119682
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-22C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-22C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+856G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-448C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-22C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-22C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-22C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+856G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-22C>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

17-73753262-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753262
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753263
    reference: chr 17
allele count: 98
allele frequency: 8.188092174523336e-4
allele num: 119686
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-17dupC
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+852dupG
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-17dupC
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-17dupC
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+852dupG
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-17dupC
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-17dupC
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-443dupC
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-17dupC
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15974
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

17-73753266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753266
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753266
    reference: chr 17
allele count: 549
allele frequency: 4.587539274015642e-3
allele num: 119672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-15A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+849T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-15A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-441A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-15A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-15A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-15A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+849T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-15A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 13498
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 9.75e1
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-73753266-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753266
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753266
    reference: chr 17
allele count: 253
allele frequency: 2.114111905876061e-3
allele num: 119672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-441A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+849T>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-15A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-15A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-15A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-15A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-15A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-15A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+849T>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13498
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 9.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-73753272-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753272
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753272
    reference: chr 17
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+843G>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-435C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-9C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-9C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+843G>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-9C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-9C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-9C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-9C>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18336
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-73753272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753272
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753272
    reference: chr 17
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+843G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-9C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-9C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-9C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-9C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-9C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-9C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-435C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+843G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-73753274-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753274
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753274
    reference: chr 17
allele count: 2
allele frequency: 1.673920321392702e-5
allele num: 119480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-7A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-433A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-7A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+841T>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-7A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+841T>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-7A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-7A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-7A>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.25e1
  variant carriers: 0
hgvs: c.5219-7A>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-73753276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753276
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753276
    reference: chr 17
allele count: 1
allele frequency: 8.361483661660925e-6
allele num: 119596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-5C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+839G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-431C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-5C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-5C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-5C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-5C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-5C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+839G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
hgvs: c.5219-5C>T
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-73753277-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753277
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753277
    reference: chr 17
allele count: 2
allele frequency: 1.672296732332185e-5
allele num: 119596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-430C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-4C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+838G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-4C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-4C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-4C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-4C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-4C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+838G>C
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
hgvs: c.5219-4C>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-73753278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753278
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753278
    reference: chr 17
allele count: 51
allele frequency: 4.264855914769781e-4
allele num: 119582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.70-3C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+837G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5009-3C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5009-3C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+837G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5219-3C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5168-3C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5168-3C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-429C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: c.5219-3C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-73753288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753288
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753288
    reference: chr 17
allele count: 1
allele frequency: 8.372124175345769e-6
allele num: 119444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5175C>T
  hgvsp: ENST00000449880.2:c.5175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+827G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.77C>T
  hgvsp: ENST00000578318.1:c.77C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+827G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5016C>T
  hgvsp: ENST00000579662.1:c.5016C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5175C>T
  hgvsp: ENST00000339591.3:c.5175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5016C>T
  hgvsp: ENST00000450894.3:c.5016C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-419C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5226C>T
  hgvsp: ENST00000200181.3:c.5226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe1742Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-73753290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753290
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753290
    reference: chr 17
allele count: 3
allele frequency: 2.512394479431864e-5
allele num: 119408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5177C>T
  hgvsp: ENSP00000344079.3:p.Pro1726Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5228C>T
  hgvsp: ENSP00000200181.3:p.Pro1743Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-417C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+825G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+825G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5018C>T
  hgvsp: ENSP00000463651.1:p.Pro1673Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5177C>T
  hgvsp: ENSP00000400217.2:p.Pro1726Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5018C>T
  hgvsp: ENSP00000405536.3:p.Pro1673Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.79C>T
  hgvsp: ENSP00000462494.1:p.Pro27Leu
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro1743Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

17-73753291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753291
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753291
    reference: chr 17
allele count: 18
allele frequency: 1.508017627050485e-4
allele num: 119362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-416G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+824C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5178G>A
  hgvsp: ENST00000449880.2:c.5178G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.80G>A
  hgvsp: ENST00000578318.1:c.80G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5229G>A
  hgvsp: ENST00000200181.3:c.5229G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5019G>A
  hgvsp: ENST00000450894.3:c.5019G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5178G>A
  hgvsp: ENST00000339591.3:c.5178G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5019G>A
  hgvsp: ENST00000579662.1:c.5019G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+824C>T
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1743Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

17-73753296-TGGGCAGCCGTGCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753296
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753283
    reference: chr 17
allele count: 1
allele frequency: 8.380684199058012e-6
allele num: 119322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsp: ENSP00000462494.1:p.Arg32SerfsTer24
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsp: ENSP00000344079.3:p.Arg1731SerfsTer24
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsp: ENSP00000463651.1:p.Arg1678SerfsTer24
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsp: ENSP00000200181.3:p.Arg1748SerfsTer24
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsp: ENSP00000405536.3:p.Arg1678SerfsTer24
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsp: ENSP00000400217.2:p.Arg1731SerfsTer24
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1748SerfsTer24
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: TGGGCAGCCGTGCC
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

17-73753300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753300
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753300
    reference: chr 17
allele count: 1
allele frequency: 8.376191513242758e-6
allele num: 119386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5028C>T
  hgvsp: ENST00000579662.1:c.5028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+815G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5187C>T
  hgvsp: ENST00000449880.2:c.5187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5238C>T
  hgvsp: ENST00000200181.3:c.5238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5028C>T
  hgvsp: ENST00000450894.3:c.5028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5187C>T
  hgvsp: ENST00000339591.3:c.5187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.89C>T
  hgvsp: ENST00000578318.1:c.89C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+815G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-407C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1746Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

17-73753304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753304
    reference: chr 17
allele count: 4
allele frequency: 3.349017900500678e-5
allele num: 119438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5191C>T
  hgvsp: ENSP00000344079.3:p.Arg1731Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+811G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5032C>T
  hgvsp: ENSP00000405536.3:p.Arg1678Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-403C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5032C>T
  hgvsp: ENSP00000463651.1:p.Arg1678Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.93C>T
  hgvsp: ENSP00000462494.1:p.Arg32Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+811G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5191C>T
  hgvsp: ENSP00000400217.2:p.Arg1731Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5242C>T
  hgvsp: ENSP00000200181.3:p.Arg1748Cys
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1748Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-73753305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753305
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753305
    reference: chr 17
allele count: 39
allele frequency: 3.265073757178976e-4
allele num: 119446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-402G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+810C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+810C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5243G>A
  hgvsp: ENSP00000200181.3:p.Arg1748His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5033G>A
  hgvsp: ENSP00000463651.1:p.Arg1678His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.94G>A
  hgvsp: ENSP00000462494.1:p.Arg32His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5192G>A
  hgvsp: ENSP00000400217.2:p.Arg1731His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5033G>A
  hgvsp: ENSP00000405536.3:p.Arg1678His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5192G>A
  hgvsp: ENSP00000344079.3:p.Arg1731His
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 13589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18339
  bin: 9.75e1
  variant carriers: 39
hgvs: p.Arg1748His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

17-73753309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753309
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753309
    reference: chr 17
allele count: 1
allele frequency: 8.371563473194253e-6
allele num: 119452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5247C>T
  hgvsp: ENST00000200181.3:c.5247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5037C>T
  hgvsp: ENST00000579662.1:c.5037C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5196C>T
  hgvsp: ENST00000449880.2:c.5196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+806G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.98C>T
  hgvsp: ENST00000578318.1:c.98C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5196C>T
  hgvsp: ENST00000339591.3:c.5196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+806G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-398C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5037C>T
  hgvsp: ENST00000450894.3:c.5037C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7214
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala1749Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

17-73753310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753310
    reference: chr 17
allele count: 169
allele frequency: 1.414960062961537e-3
allele num: 119438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5197G>A
  hgvsp: ENSP00000344079.3:p.Gly1733Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.99G>A
  hgvsp: ENSP00000462494.1:p.Gly34Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+805C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+805C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5038G>A
  hgvsp: ENSP00000463651.1:p.Gly1680Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-397G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5248G>A
  hgvsp: ENSP00000200181.3:p.Gly1750Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5038G>A
  hgvsp: ENSP00000405536.3:p.Gly1680Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5197G>A
  hgvsp: ENSP00000400217.2:p.Gly1733Arg
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly1750Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-73753317-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753317
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753317
    reference: chr 17
allele count: 3
allele frequency: 2.510292198011849e-5
allele num: 119508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5045T>G
  hgvsp: ENSP00000405536.3:p.Phe1682Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5045T>G
  hgvsp: ENSP00000463651.1:p.Phe1682Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.106T>G
  hgvsp: ENSP00000462494.1:p.Phe36Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+798A>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5204T>G
  hgvsp: ENSP00000344079.3:p.Phe1735Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5204T>G
  hgvsp: ENSP00000400217.2:p.Phe1735Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-390T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+798A>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5255T>G
  hgvsp: ENSP00000200181.3:p.Phe1752Cys
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe1752Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

17-73753322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753322
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753322
    reference: chr 17
allele count: 3
allele frequency: 2.510376221716428e-5
allele num: 119504
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5260C>T
  hgvsp: ENSP00000200181.3:p.His1754Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5050C>T
  hgvsp: ENSP00000405536.3:p.His1684Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+793G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.111C>T
  hgvsp: ENSP00000462494.1:p.His38Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5209C>T
  hgvsp: ENSP00000344079.3:p.His1737Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+793G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5050C>T
  hgvsp: ENSP00000463651.1:p.His1684Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5209C>T
  hgvsp: ENSP00000400217.2:p.His1737Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-385C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His1754Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-73753323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753323
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753323
    reference: chr 17
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.112A>G
  hgvsp: ENSP00000462494.1:p.His38Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5051A>G
  hgvsp: ENSP00000405536.3:p.His1684Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5210A>G
  hgvsp: ENSP00000400217.2:p.His1737Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-384A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+792T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5210A>G
  hgvsp: ENSP00000344079.3:p.His1737Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5261A>G
  hgvsp: ENSP00000200181.3:p.His1754Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5051A>G
  hgvsp: ENSP00000463651.1:p.His1684Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+792T>C
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His1754Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73753324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753324
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753324
    reference: chr 17
allele count: 1
allele frequency: 8.366240546148183e-6
allele num: 119528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.113C>T
  hgvsp: ENST00000578318.1:c.113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5211C>T
  hgvsp: ENST00000449880.2:c.5211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5052C>T
  hgvsp: ENST00000450894.3:c.5052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-383C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5211C>T
  hgvsp: ENST00000339591.3:c.5211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5052C>T
  hgvsp: ENST00000579662.1:c.5052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+791G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5262C>T
  hgvsp: ENST00000200181.3:c.5262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+791G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His1754His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-73753326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753326
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753326
    reference: chr 17
allele count: 50
allele frequency: 4.183890348601744e-4
allele num: 119506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+789G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5213C>T
  hgvsp: ENSP00000344079.3:p.Pro1738Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+789G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5054C>T
  hgvsp: ENSP00000463651.1:p.Pro1685Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-381C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.115C>T
  hgvsp: ENSP00000462494.1:p.Pro39Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5054C>T
  hgvsp: ENSP00000405536.3:p.Pro1685Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5213C>T
  hgvsp: ENSP00000400217.2:p.Pro1738Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5264C>T
  hgvsp: ENSP00000200181.3:p.Pro1755Leu
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11691
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1755Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

17-73753327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753327
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753327
    reference: chr 17
allele count: 4
allele frequency: 3.346664212446244e-5
allele num: 119522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.116G>A
  hgvsp: ENST00000578318.1:c.116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+788C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5214G>A
  hgvsp: ENST00000449880.2:c.5214G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5214G>A
  hgvsp: ENST00000339591.3:c.5214G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5055G>A
  hgvsp: ENST00000450894.3:c.5055G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5265G>A
  hgvsp: ENST00000200181.3:c.5265G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5055G>A
  hgvsp: ENST00000579662.1:c.5055G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+788C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-380G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1755Pro
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

17-73753335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753335
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753335
    reference: chr 17
allele count: 2
allele frequency: 1.672464543751672e-5
allele num: 119584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-372G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+780C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5063G>A
  hgvsp: ENSP00000463651.1:p.Ser1688Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5222G>A
  hgvsp: ENSP00000344079.3:p.Ser1741Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5222G>A
  hgvsp: ENSP00000400217.2:p.Ser1741Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.124G>A
  hgvsp: ENSP00000462494.1:p.Ser42Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5063G>A
  hgvsp: ENSP00000405536.3:p.Ser1688Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+780C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5273G>A
  hgvsp: ENSP00000200181.3:p.Ser1758Asn
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1758Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-73753336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753336
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753336
    reference: chr 17
allele count: 1
allele frequency: 8.362322718758362e-6
allele num: 119584
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5274C>T
  hgvsp: ENST00000200181.3:c.5274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+779G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.125C>T
  hgvsp: ENST00000578318.1:c.125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+779G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5223C>T
  hgvsp: ENST00000339591.3:c.5223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5064C>T
  hgvsp: ENST00000450894.3:c.5064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5064C>T
  hgvsp: ENST00000579662.1:c.5064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-371C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5223C>T
  hgvsp: ENST00000449880.2:c.5223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1758Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-73753337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753337
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753337
    reference: chr 17
allele count: 5
allele frequency: 4.181301220939956e-5
allele num: 119580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5065G>A
  hgvsp: ENSP00000463651.1:p.Glu1689Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+778C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-370G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.126G>A
  hgvsp: ENSP00000462494.1:p.Glu43Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+778C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5224G>A
  hgvsp: ENSP00000344079.3:p.Glu1742Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5275G>A
  hgvsp: ENSP00000200181.3:p.Glu1759Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5065G>A
  hgvsp: ENSP00000405536.3:p.Glu1689Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5224G>A
  hgvsp: ENSP00000400217.2:p.Glu1742Lys
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18269
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Glu1759Lys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-73753340-TACAGCAGCATCACCACCACCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753319
    reference: chr 17
allele count: 126
allele frequency: 1.053599799314324e-3
allele num: 119590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsp: ENSP00000463651.1:p.Ser1691_His1697del
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsp: ENSP00000462494.1:p.Ser45_His51del
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsp: ENSP00000400217.2:p.Ser1744_His1750del
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsp: ENSP00000200181.3:p.Ser1761_His1767del
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsp: ENSP00000405536.3:p.Ser1691_His1697del
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsp: ENSP00000344079.3:p.Ser1744_His1750del
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11678
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1761_His1767del
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: TACAGCAGCATCACCACCACCC
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-73753356-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753356
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753356
    reference: chr 17
allele count: 1
allele frequency: 8.382510729613734e-6
allele num: 119296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5084C>T
  hgvsp: ENSP00000405536.3:p.Thr1695Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5243C>T
  hgvsp: ENSP00000344079.3:p.Thr1748Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-351C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5294C>T
  hgvsp: ENSP00000200181.3:p.Thr1765Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+759G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5243C>T
  hgvsp: ENSP00000400217.2:p.Thr1748Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+759G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5084C>T
  hgvsp: ENSP00000463651.1:p.Thr1695Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.145C>T
  hgvsp: ENSP00000462494.1:p.Thr49Ile
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr1765Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-73753359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753359
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753359
    reference: chr 17
allele count: 3
allele frequency: 2.51454243709453e-5
allele num: 119306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5087C>T
  hgvsp: ENSP00000463651.1:p.Thr1696Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5246C>T
  hgvsp: ENSP00000400217.2:p.Thr1749Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.148C>T
  hgvsp: ENSP00000462494.1:p.Thr50Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5297C>T
  hgvsp: ENSP00000200181.3:p.Thr1766Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-348C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5246C>T
  hgvsp: ENSP00000344079.3:p.Thr1749Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5087C>T
  hgvsp: ENSP00000405536.3:p.Thr1696Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+756G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+756G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13715
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1766Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum

17-73753361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753361
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753361
    reference: chr 17
allele count: 1
allele frequency: 8.381246123673667e-6
allele num: 119314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+754G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.150C>T
  hgvsp: ENSP00000462494.1:p.His51Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5299C>T
  hgvsp: ENSP00000200181.3:p.His1767Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5089C>T
  hgvsp: ENSP00000405536.3:p.His1697Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+754G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5248C>T
  hgvsp: ENSP00000344079.3:p.His1750Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-346C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5089C>T
  hgvsp: ENSP00000463651.1:p.His1697Tyr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5248C>T
  hgvsp: ENSP00000400217.2:p.His1750Tyr
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15857
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His1767Tyr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

17-73753366-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753366
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753366
    reference: chr 17
allele count: 1
allele frequency: 8.366240546148183e-6
allele num: 119528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5094C>G
  hgvsp: ENST00000579662.1:c.5094C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+749G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5253C>G
  hgvsp: ENST00000339591.3:c.5253C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5304C>G
  hgvsp: ENST00000200181.3:c.5304C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-341C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+749G>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5094C>G
  hgvsp: ENST00000450894.3:c.5094C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.155C>G
  hgvsp: ENST00000578318.1:c.155C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5253C>G
  hgvsp: ENST00000449880.2:c.5253C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1768Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-73753369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753369
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753369
    reference: chr 17
allele count: 12
allele frequency: 1.004251330633013e-4
allele num: 119492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5097C>T
  hgvsp: ENST00000579662.1:c.5097C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+746G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.158C>T
  hgvsp: ENST00000578318.1:c.158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5097C>T
  hgvsp: ENST00000450894.3:c.5097C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5307C>T
  hgvsp: ENST00000200181.3:c.5307C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-338C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5256C>T
  hgvsp: ENST00000449880.2:c.5256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5256C>T
  hgvsp: ENST00000339591.3:c.5256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+746G>A
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser1769Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-73753370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753370
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753370
    reference: chr 17
allele count: 1
allele frequency: 8.368340892734607e-6
allele num: 119498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5257G>A
  hgvsp: ENSP00000400217.2:p.Ala1753Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.159G>A
  hgvsp: ENSP00000462494.1:p.Ala54Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5308G>A
  hgvsp: ENSP00000200181.3:p.Ala1770Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-337G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5098G>A
  hgvsp: ENSP00000463651.1:p.Ala1700Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5098G>A
  hgvsp: ENSP00000405536.3:p.Ala1700Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+745C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+745C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5257G>A
  hgvsp: ENSP00000344079.3:p.Ala1753Thr
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1770Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-73753372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753372
    reference: chr 17
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+743G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5310C>T
  hgvsp: ENST00000200181.3:c.5310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5259C>T
  hgvsp: ENST00000339591.3:c.5259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5259C>T
  hgvsp: ENST00000449880.2:c.5259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5100C>T
  hgvsp: ENST00000450894.3:c.5100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+743G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5100C>T
  hgvsp: ENST00000579662.1:c.5100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.161C>T
  hgvsp: ENST00000578318.1:c.161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-335C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1770Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-73753373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753373
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753373
    reference: chr 17
allele count: 1
allele frequency: 8.368340892734607e-6
allele num: 119498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5101A>G
  hgvsp: ENSP00000405536.3:p.Thr1701Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5311A>G
  hgvsp: ENSP00000200181.3:p.Thr1771Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+742T>C
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5260A>G
  hgvsp: ENSP00000400217.2:p.Thr1754Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-334A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5260A>G
  hgvsp: ENSP00000344079.3:p.Thr1754Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.162A>G
  hgvsp: ENSP00000462494.1:p.Thr55Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5101A>G
  hgvsp: ENSP00000463651.1:p.Thr1701Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+742T>C
  variant of: http://identifiers.org/hgnc/4118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18227
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr1771Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

17-73753375-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753375
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753375
    reference: chr 17
allele count: 8
allele frequency: 6.696690160887981e-5
allele num: 119462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-332C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5262C>T
  hgvsp: ENST00000339591.3:c.5262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5313C>T
  hgvsp: ENST00000200181.3:c.5313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5103C>T
  hgvsp: ENST00000450894.3:c.5103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5262C>T
  hgvsp: ENST00000449880.2:c.5262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+740G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.164C>T
  hgvsp: ENST00000578318.1:c.164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+740G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5103C>T
  hgvsp: ENST00000579662.1:c.5103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4409
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr1771Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-73753376-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753376
    reference: chr 17
allele count: 7
allele frequency: 5.860192549183759e-5
allele num: 119450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5104G>A
  hgvsp: ENSP00000463651.1:p.Glu1702Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5263G>A
  hgvsp: ENSP00000344079.3:p.Glu1755Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5104G>A
  hgvsp: ENSP00000405536.3:p.Glu1702Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.165G>A
  hgvsp: ENSP00000462494.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5314G>A
  hgvsp: ENSP00000200181.3:p.Glu1772Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5263G>A
  hgvsp: ENSP00000400217.2:p.Glu1755Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+739C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+739C>T
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-331G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu1772Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-73753376-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753376
    reference: chr 17
allele count: 1
allele frequency: 8.371703641691085e-6
allele num: 119450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5104G>C
  hgvsp: ENSP00000463651.1:p.Glu1702Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5104G>C
  hgvsp: ENSP00000405536.3:p.Glu1702Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-331G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.165G>C
  hgvsp: ENSP00000462494.1:p.Glu56Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5263G>C
  hgvsp: ENSP00000344079.3:p.Glu1755Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+739C>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+739C>G
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5263G>C
  hgvsp: ENSP00000400217.2:p.Glu1755Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5314G>C
  hgvsp: ENSP00000200181.3:p.Glu1772Gln
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu1772Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-73753379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73753379
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73753379
    reference: chr 17
allele count: 1
allele frequency: 8.372264362619514e-6
allele num: 119442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.5266C>T
  hgvsp: ENSP00000400217.2:p.Pro1756Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.5107C>T
  hgvsp: ENSP00000405536.3:p.Pro1703Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000462494
  ensembl transcript: ENST00000578318
  gene symbol: ITGB4
  hgvsc: ENST00000578318.1:c.168C>T
  hgvsp: ENSP00000462494.1:p.Pro57Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl protein: ENSP00000225614
  ensembl transcript: ENST00000225614
  gene symbol: GALK1
  hgvsc: ENST00000225614.2:c.*22+736G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.5266C>T
  hgvsp: ENSP00000344079.3:p.Pro1756Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.5107C>T
  hgvsp: ENSP00000463651.1:p.Pro1703Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.5317C>T
  hgvsp: ENSP00000200181.3:p.Pro1773Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108479
  ensembl transcript: ENST00000589643
  gene symbol: GALK1
  hgvsc: ENST00000589643.1:n.254+736G>A
  variant of: http://identifiers.org/hgnc/4118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.266-328C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1773Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522718966987453e-5
allele num: 65672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.446192e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 2.137e0

QD
type: SiteQuality
SIO_000300: 1.018e1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.721e0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18584
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.567739577940863e-5
allele num: 65678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 1.731e0

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

DP
type: SiteQuality
SIO_000300: 2.446816e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeQuality
all individuals: 4045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18588
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.674786845310597e-4
allele num: 65680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.111e1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.566e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

DP
type: SiteQuality
SIO_000300: 2.447013e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18581
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.12e1

VQSLOD
type: SiteQuality
SIO_000300: -3.028e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.212e0

DP
type: SiteQuality
SIO_000300: 2.446864e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.149e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.868e1

GenotypeQuality
all individuals: 612
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521606816798539e-5
allele num: 65720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.87e1

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

QD
type: SiteQuality
SIO_000300: 1.229e1

FS
type: SiteQuality
SIO_000300: 6.951e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

DP
type: SiteQuality
SIO_000300: 2.447068e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7237
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521560512461581e-5
allele num: 65722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

QD
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: -3.626e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

DP
type: SiteQuality
SIO_000300: 2.446974e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.824e0

MQ
type: SiteQuality
SIO_000300: 5.702e1

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18583
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2826
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043121024923161e-5
allele num: 65722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 2.447067e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

FS
type: SiteQuality
SIO_000300: 1.047e0

GenotypeQuality
all individuals: 3593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521560512461581e-5
allele num: 65722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

FS
type: SiteQuality
SIO_000300: 1.047e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.447067e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 6.6e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521653123953863e-5
allele num: 65718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.44677e6

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

FS
type: SiteQuality
SIO_000300: 8.827e0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.687e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeQuality
all individuals: 16501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.287e0

FS
type: SiteQuality
SIO_000300: 2.874e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.107e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.446323e6

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

DP
type: SiteQuality
SIO_000300: 2.44645e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.957e0

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 1.093e1

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 7206
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65684
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.445724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 8.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 71

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16424
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.045345189877273e-5
allele num: 65674
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 67
allele frequency: 6.557056175376786e-3
allele num: 10218
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

QD
type: SiteQuality
SIO_000300: 1.427e1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.447962e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.938295788442703e-4
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65676
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.445251e6

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.393e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 170
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GenotypeQuality
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GenotypeQuality
all individuals: 669
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

DP
type: SiteQuality
SIO_000300: 2.444374e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 173
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GenotypeQuality
all individuals: 18572
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 700
bin: 2.25e1
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GenotypeQuality
all individuals: 3587
bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 36
bin: 4.25e1
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GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7210
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.080337851109802e-3
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523879186858066e-5
allele num: 65622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.323e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 2.443172e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.995e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

FS
type: SiteQuality
SIO_000300: 5.15e-1

GenotypeQuality
all individuals: 2323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18558
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524901643843972e-5
allele num: 65578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.245e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 2.441665e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18552
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 6.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.646e0

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.875e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 2.440931e6

QD
type: SiteQuality
SIO_000300: 1.112e1

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 322
allele frequency: 4.916330768291194e-3
allele num: 65496
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.212541139788671e-3
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.918327086210298e-4
allele num: 10138
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 1.969100272644653e-3
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.605381165919282e-3
allele num: 892
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e0

FS
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

DP
type: SiteQuality
SIO_000300: 2.456299e6

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527603800678256e-5
allele num: 65462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

QD
type: SiteQuality
SIO_000300: 1.588e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 2.438718e6

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 2.438828e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

QD
type: SiteQuality
SIO_000300: 1.477e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528210770829513e-5
allele num: 65436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 1.119e0

DP
type: SiteQuality
SIO_000300: 2.438859e6

QD
type: SiteQuality
SIO_000300: 1.519e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8610
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MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 2.438882e6

QD
type: SiteQuality
SIO_000300: 1.477e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.895193065405832e-4
allele num: 10152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055767761650114e-5
allele num: 65450
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.294e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.101e0

DP
type: SiteQuality
SIO_000300: 2.43898e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18509
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.196604884808592e-4
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.889676670130188e-4
allele num: 65444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.953918865695155e-4
allele num: 10156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

QD
type: SiteQuality
SIO_000300: 1.579e1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

DP
type: SiteQuality
SIO_000300: 2.440925e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

FS
type: SiteQuality
SIO_000300: 3.28e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18488
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055767761650114e-5
allele num: 65450
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.912e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.43834e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.68e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQ
type: SiteQuality
SIO_000300: 5.667e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 3.557e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

GenotypeQuality
all individuals: 7176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
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GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.524e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.176e0

DP
type: SiteQuality
SIO_000300: 2.4371e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.734e1

VQSLOD
type: SiteQuality
SIO_000300: -5.446e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

GenotypeQuality
all individuals: 16049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7168
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variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18485
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529005229197884e-5
allele num: 65402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 1.375e0

QD
type: SiteQuality
SIO_000300: 1.318e1

DP
type: SiteQuality
SIO_000300: 2.436985e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.638e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

FS
type: SiteQuality
SIO_000300: 2.35e0

VQSLOD
type: SiteQuality
SIO_000300: -8.141e-1

DP
type: SiteQuality
SIO_000300: 2.436702e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18485
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529285823520416e-5
allele num: 65390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

QD
type: SiteQuality
SIO_000300: 9.19e0

DP
type: SiteQuality
SIO_000300: 2.436381e6

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18554
bin: 9.75e1
variant carriers: 98

GenotypeQuality
all individuals: 3596
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 96
allele frequency: 9.46558864129363e-3
allele num: 10142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65396
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 2.440753e6

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.997e1

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7116
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 3565
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18860
bin: 9.75e1
variant carriers: 544

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15926
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 500
allele frequency: 7.647832604239959e-3
allele num: 65378
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.796257796257797e-4
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.07018927444795e-3
allele num: 10144
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.242152466367713e-3
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 2.422774076317383e-3
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

DP
type: SiteQuality
SIO_000300: 2.483467e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 18860
bin: 9.75e1
variant carriers: 253

GenotypeQuality
all individuals: 896
bin: 2.25e1
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GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 3565
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 4332
bin: 7.75e1
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GenotypeQuality
all individuals: 2779
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.847309743092584e-4
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 213
allele frequency: 3.257976689406222e-3
allele num: 65378
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.943217665615142e-4
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.338877338877339e-3
allele num: 11544
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 2.483467e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530502923260583e-5
allele num: 65338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.501e1

FS
type: SiteQuality
SIO_000300: 1.4966e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 2.429026e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.602e0

VQSLOD
type: SiteQuality
SIO_000300: -2.621e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530502923260583e-5
allele num: 65338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.501e1

DP
type: SiteQuality
SIO_000300: 2.429026e6

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 1.4966e1

VQSLOD
type: SiteQuality
SIO_000300: -2.621e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.065322012077369e-5
allele num: 65246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.639e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 1.473e1

DP
type: SiteQuality
SIO_000300: 2.428444e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.869719699960521e-5
allele num: 10132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 2.428307e6

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 1.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: -2.223e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 4.868e0

DP
type: SiteQuality
SIO_000300: 2.42785e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.814e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 51

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.247191011235955e-3
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
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allele count: 19
allele frequency: 2.877915783096032e-3
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.593617933484412e-4
allele num: 65308
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

DP
type: SiteQuality
SIO_000300: 2.430062e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65218
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1743e1

DP
type: SiteQuality
SIO_000300: 2.424802e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.067484662576687e-5
allele num: 65200
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 888
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VQSLOD
type: SiteQuality
SIO_000300: -2.364e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.876e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.77e0

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.68799680815149e-4
allele num: 65166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.928514694201747e-5
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

QD
type: SiteQuality
SIO_000300: 1.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.42516e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -5.439e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.976e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.319e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 2.4241e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.751e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534071733194244e-5
allele num: 65186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.008e0

FS
type: SiteQuality
SIO_000300: 6.468e0

DP
type: SiteQuality
SIO_000300: 2.424895e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.276e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.539e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326122354035822e-4
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.06597988717194e-5
allele num: 65232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 2.42649e6

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 1.755e0

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

QD
type: SiteQuality
SIO_000300: 1.082e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2311
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.326122354035822e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.197093718384991e-5
allele num: 65238
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 2.87242472266244e-3
allele num: 10096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.182e1

DP
type: SiteQuality
SIO_000300: 2.429702e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.98e-1

DP
type: SiteQuality
SIO_000300: 2.427945e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 168

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 84
allele frequency: 1.273885350318471e-2
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 82
allele frequency: 1.257013213968176e-3
allele num: 65234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.25e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.438878e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.596433167861739e-5
allele num: 65268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601908065915004e-4
allele num: 11530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.177e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 5.713e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: -9.559e-1

DP
type: SiteQuality
SIO_000300: 2.429917e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

QD
type: SiteQuality
SIO_000300: 8.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532567049808429e-5
allele num: 65250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 8.070000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.429881e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532097441397273e-5
allele num: 65270
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 2.430352e6

QD
type: SiteQuality
SIO_000300: 1.296e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 49

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 7.201740676044253e-4
allele num: 65262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.035822707953856e-4
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.658e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

DP
type: SiteQuality
SIO_000300: 2.433185e6

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.127826459954654e-5
allele num: 65276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.97e-1

DP
type: SiteQuality
SIO_000300: 2.430711e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061380682687892e-5
allele num: 65330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.835e0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.296e1

DP
type: SiteQuality
SIO_000300: 2.43099e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530690341343946e-5
allele num: 65330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.261e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.431028e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
type: Population
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allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.848335631278314e-5
allele num: 10154
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.469210754553339e-4
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18341
bin: 9.75e1
variant carriers: 125

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-5
allele num: 65340
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

Latino
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allele count: 125
allele frequency: 1.083940339923691e-2
allele num: 11532
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e0

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531768886710373e-5
allele num: 65284
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11302
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.118e0

FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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SIO_000300: 2.424666e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65300
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
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East Asian
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allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10144
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Other
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allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.015e0

FS
type: SiteQuality
SIO_000300: 1.686e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531440472908818e-5
allele num: 65298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.172e0

VQSLOD
type: SiteQuality
SIO_000300: -2.343e0

FS
type: SiteQuality
SIO_000300: 5.417e0

QD
type: SiteQuality
SIO_000300: 1.028e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 2.424609e6

MQ
type: SiteQuality
SIO_000300: 5.857e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.822e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531721961829489e-5
allele num: 65286
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.552e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.952e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.605e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 2.427737e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 7
allele frequency: 6.906077348066298e-4
allele num: 10136
num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.532285250222181e-5
allele num: 65262
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Latino
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allele frequency: 1.73460537727667e-4
allele num: 11530
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DP
type: SiteQuality
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QD
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele frequency: 1.16144018583043e-4
allele num: 8610
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Other
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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East Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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African
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DP
type: SiteQuality
SIO_000300: 2.425912e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.527e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.58e0

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 2.441e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18230
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.19793966151582e-5
allele num: 65232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 2.425166e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18226
bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.19906782779345e-5
allele num: 65224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

DP
type: SiteQuality
SIO_000300: 2.425154e6

FS
type: SiteQuality
SIO_000300: 6.25e-1

QD
type: SiteQuality
SIO_000300: 1.467e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

DP
type: SiteQuality
SIO_000300: 2.425154e6

QD
type: SiteQuality
SIO_000300: 1.467e1