X-100746329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746329
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746329
    reference: chr 0
allele count: 1
allele frequency: 1.205690860863275e-4
allele num: 8294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3243G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2027G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2027G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2027G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3243G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2027G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2753G>A
  hgvsp: ENSP00000404304.3:p.Arg918His
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg918His
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

X-100746359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746359
    reference: chr 0
allele count: 1
allele frequency: 1.205109664979513e-4
allele num: 8298
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2783T>C
  hgvsp: ENSP00000404304.3:p.Val928Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2057T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2057T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3273T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3273T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2057T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2057T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val928Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

X-100746459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746459
    reference: chr 0
allele count: 7
allele frequency: 8.446965126101123e-4
allele num: 8287
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2157G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2883G>A
  hgvsp: ENST00000423738.3:c.2883G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3373G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3373G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2157G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2157G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2157G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1694
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu961Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-100746494-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746494
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746494
    reference: chr 0
allele count: 1
allele frequency: 1.206563706563707e-4
allele num: 8288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3408A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2192A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2192A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2918A>G
  hgvsp: ENSP00000404304.3:p.Asn973Ser
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2192A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3408A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2192A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn973Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-100746543-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746543
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746543
    reference: chr 0
allele count: 1
allele frequency: 1.207000603500302e-4
allele num: 8285
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2241G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2241G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2967G>C
  hgvsp: ENSP00000404304.3:p.Gln989His
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2241G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3457G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2241G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3457G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln989His
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-100746568-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746568
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746568
    reference: chr 0
allele count: 1
allele frequency: 1.20627261761158e-4
allele num: 8290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2266A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3482A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3482A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2266A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2266A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2992A>T
  hgvsp: ENSP00000404304.3:p.Ser998Cys
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2266A>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser998Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

X-100746572-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746572
    reference: chr 0
allele count: 3
allele frequency: 3.61969111969112e-4
allele num: 8288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3486A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2270A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2270A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2270A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2270A>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.2996A>T
  hgvsp: ENSP00000404304.3:p.Glu999Val
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3486A>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu999Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-100746599-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746599
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746599
    reference: chr 0
allele count: 1
allele frequency: 1.206709303728732e-4
allele num: 8287
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2297T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3023T>C
  hgvsp: ENSP00000404304.3:p.Val1008Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3513T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2297T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2297T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2297T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3513T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val1008Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-100746603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746603
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746603
    reference: chr 0
allele count: 1
allele frequency: 1.206127125799059e-4
allele num: 8291
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2301G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3027G>A
  hgvsp: ENST00000423738.3:c.3027G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2301G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3517G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3517G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2301G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2301G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys1009Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-100746613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746613
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746613
    reference: chr 0
allele count: 13
allele frequency: 1.569479657129059e-3
allele num: 8283
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2311A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2311A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3527A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2311A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3037A>G
  hgvsp: ENSP00000404304.3:p.Ile1013Val
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2311A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3527A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile1013Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

X-100746671-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746671
    reference: chr 0
allele count: 70
allele frequency: 8.511673151750972e-3
allele num: 8224
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3095T>C
  hgvsp: ENSP00000404304.3:p.Ile1032Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2369T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3585T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3585T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2369T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2369T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2369T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 2
hgvs: p.Ile1032Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-100746680-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746680
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746680
    reference: chr 0
allele count: 70
allele frequency: 8.52099817407182e-3
allele num: 8215
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2378G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2378G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2378G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3594G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3594G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3104G>T
  hgvsp: ENSP00000404304.3:p.Gly1035Val
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2378G>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly1035Val
num of homozygotes: 6
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-100746706-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746706
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746706
    reference: chr 0
allele count: 1
allele frequency: 1.220852154804053e-4
allele num: 8191
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3130G>T
  hgvsp: ENSP00000404304.3:p.Ala1044Ser
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2404G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2404G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3620G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2404G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2404G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3620G>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1044Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

X-100746710-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746710
    reference: chr 0
allele count: 32
allele frequency: 3.909590714722052e-3
allele num: 8185
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2408G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3624G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2408G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3134G>C
  hgvsp: ENSP00000404304.3:p.Arg1045Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2408G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2408G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3624G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1045Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-100746723-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746723
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746723
    reference: chr 0
allele count: 14
allele frequency: 1.711910002445586e-3
allele num: 8178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2421G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2421G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3147G>T
  hgvsp: ENSP00000404304.3:p.Met1049Ile
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3637G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2421G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3637G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2421G>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Met1049Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-100746727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746727
    reference: chr 0
allele count: 1
allele frequency: 1.221747098350641e-4
allele num: 8185
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3641A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3151A>G
  hgvsp: ENSP00000404304.3:p.Thr1051Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2425A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2425A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2425A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3641A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2425A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1051Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-100746749-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746749
    reference: chr 0
allele count: 1
allele frequency: 1.223391240518718e-4
allele num: 8174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2447C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3173C>G
  hgvsp: ENSP00000404304.3:p.Ala1058Gly
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3663C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2447C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3663C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2447C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2447C>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala1058Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

X-100746791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746791
    reference: chr 0
allele count: 1
allele frequency: 1.235330450895614e-4
allele num: 8095
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3705C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2489C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2489C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2489C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3215C>T
  hgvsp: ENSP00000404304.3:p.Pro1072Leu
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2489C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3705C>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1072Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-100746820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746820
    reference: chr 0
allele count: 16
allele frequency: 2.053915275994865e-3
allele num: 7790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2518A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2518A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2518A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2518A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3734A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3244A>G
  hgvsp: ENSP00000404304.3:p.Thr1082Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3734A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1082Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

X-100746839-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746839
    reference: chr 0
allele count: 1
allele frequency: 1.311647429171039e-4
allele num: 7624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3753C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3263C>G
  hgvsp: ENSP00000404304.3:p.Thr1088Ser
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2537C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3753C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2537C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2537C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2537C>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1088Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-100746955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746955
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746955
    reference: chr 0
allele count: 1
allele frequency: 1.2306177701206e-4
allele num: 8126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3869G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2653G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3379G>A
  hgvsp: ENSP00000404304.3:p.Val1127Met
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2653G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2653G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3869G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2653G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val1127Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-100746989-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100746989
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100746989
    reference: chr 0
allele count: 1
allele frequency: 1.292991983449703e-4
allele num: 7734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2687T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2687T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3903T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2687T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3413T>C
  hgvsp: ENSP00000404304.3:p.Ile1138Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2687T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3903T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile1138Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS

X-100747001-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747001
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747001
    reference: chr 0
allele count: 8
allele frequency: 1.080642982574632e-3
allele num: 7403
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3915G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2699G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3425G>C
  hgvsp: ENSP00000404304.3:p.Ser1142Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2699G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3915G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2699G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2699G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1142Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-100747014-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747014
    reference: chr 0
allele count: 4
allele frequency: 5.590496156533892e-4
allele num: 7155
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+3928T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+3928T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2712T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3438T>A
  hgvsp: ENSP00000404304.3:p.Asp1146Glu
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2712T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2712T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2712T>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp1146Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

X-100747135-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747135
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747135
    reference: chr 0
allele count: 1
allele frequency: 1.647446457990115e-4
allele num: 6070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2833G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4049G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2833G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2833G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3559G>C
  hgvsp: ENSP00000404304.3:p.Ala1187Pro
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2833G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4049G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1187Pro
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

X-100747161-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747161
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747161
    reference: chr 0
allele count: 1
allele frequency: 1.81653042688465e-4
allele num: 5505
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4075T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3585T>A
  hgvsp: ENST00000423738.3:c.3585T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2859T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2859T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2859T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2859T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4075T>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1195Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

X-100747237-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747237
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747237
    reference: chr 0
allele count: 3
allele frequency: 7.398273736128237e-4
allele num: 4055
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2935G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4151G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2935G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2935G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2935G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3661G>C
  hgvsp: ENSP00000404304.3:p.Gly1221Arg
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4151G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly1221Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-100747254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747254
    reference: chr 0
allele count: 33
allele frequency: 8.166295471417966e-3
allele num: 4041
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2952C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4168C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3678C>T
  hgvsp: ENST00000423738.3:c.3678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2952C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4168C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2952C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2952C>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 7.5e0
  variant carriers: 2
hgvs: p.Leu1226Leu
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-100747255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747255
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747255
    reference: chr 0
allele count: 12
allele frequency: 2.849679411066255e-3
allele num: 4211
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2953G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4169G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2953G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2953G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4169G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2953G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3679G>A
  hgvsp: ENSP00000404304.3:p.Ala1227Thr
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1227Thr
num of homozygotes: 1
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-100747269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747269
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747269
    reference: chr 0
allele count: 2
allele frequency: 4.647920055775041e-4
allele num: 4303
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2967C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3693C>G
  hgvsp: ENST00000423738.3:c.3693C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2967C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4183C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2967C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2967C>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4183C>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1231Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-100747278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747278
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747278
    reference: chr 0
allele count: 6
allele frequency: 1.341681574239714e-3
allele num: 4472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4192G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+2976G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+2976G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+2976G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+2976G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3702G>A
  hgvsp: ENST00000423738.3:c.3702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4192G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu1234Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-100747329-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747329
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747329
    reference: chr 0
allele count: 2
allele frequency: 3.76081233546446e-4
allele num: 5318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4243C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3753C>A
  hgvsp: ENST00000423738.3:c.3753C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3027C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4243C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3027C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3027C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3027C>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala1251Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS

X-100747386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747386
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747386
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6743
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3810G>A
  hgvsp: ENST00000423738.3:c.3810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3084G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3084G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4300G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3084G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3084G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4300G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu1270Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-100747416-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747416
    reference: chr 0
allele count: 7
allele frequency: 9.95166334944555e-4
allele num: 7034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3114A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4330A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3114A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4330A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3114A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3840A>G
  hgvsp: ENST00000423738.3:c.3840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3114A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1280Gly
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-100747428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747428
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747428
    reference: chr 0
allele count: 1
allele frequency: 1.443834825295986e-4
allele num: 6926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3126G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4342G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4342G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3126G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3852G>A
  hgvsp: ENST00000423738.3:c.3852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3126G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3126G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly1284Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-100747434-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747434
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747434
    reference: chr 0
allele count: 29
allele frequency: 4.230488694383662e-3
allele num: 6855
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3132G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4348G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3132G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3858G>C
  hgvsp: ENSP00000404304.3:p.Met1286Ile
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4348G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3132G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3132G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 2
hgvs: p.Met1286Ile
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-100747453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747453
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747453
    reference: chr 0
allele count: 505
allele frequency: 7.786000616712919e-2
allele num: 6486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3151G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3877G>A
  hgvsp: ENSP00000404304.3:p.Ala1293Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4367G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3151G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3151G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4367G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3151G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 2.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 6.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 46
hgvs: p.Ala1293Thr
num of homozygotes: 19
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-100747564-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747564
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747564
    reference: chr 0
allele count: 1
allele frequency: 4.219409282700422e-4
allele num: 2370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3262G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4478G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4478G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3262G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.3988G>C
  hgvsp: ENSP00000404304.3:p.Ala1330Pro
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3262G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3262G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 4
hgvs: p.Ala1330Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-100747612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747612
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747612
    reference: chr 0
allele count: 1
allele frequency: 4.670714619336758e-4
allele num: 2141
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3310G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3310G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4526G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3310G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3310G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4036G>A
  hgvsp: ENSP00000404304.3:p.Asp1346Asn
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4526G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1346Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-100747656-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747656
    reference: chr 0
allele count: 2
allele frequency: 7.779074290159471e-4
allele num: 2571
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3354C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3354C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3354C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4080C>A
  hgvsp: ENST00000423738.3:c.4080C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3354C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4570C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4570C>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1360Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-100747677-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747677
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747677
    reference: chr 0
allele count: 1
allele frequency: 3.485535029627048e-4
allele num: 2869
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3375C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3375C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4591C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4101C>A
  hgvsp: ENST00000423738.3:c.4101C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4591C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3375C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3375C>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly1367Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-100747681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747681
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747681
    reference: chr 0
allele count: 14
allele frequency: 4.655803126039242e-3
allele num: 3007
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4105G>A
  hgvsp: ENSP00000404304.3:p.Val1369Ile
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3379G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3379G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3379G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4595G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4595G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3379G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Val1369Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

X-100747686-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747686
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747686
    reference: chr 0
allele count: 1
allele frequency: 3.247807729782397e-4
allele num: 3079
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3384T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4600T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3384T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4110T>A
  hgvsp: ENSP00000404304.3:p.Asp1370Glu
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3384T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3384T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4600T>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp1370Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-100747694-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747694
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747694
    reference: chr 0
allele count: 418
allele frequency: 1.24330755502677e-1
allele num: 3362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4608G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3392G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3392G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4608G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4118G>C
  hgvsp: ENSP00000404304.3:p.Ser1373Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3392G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3392G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.5e0
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.5e0
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3681
  bin: 7.5e0
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 5
hgvs: p.Ser1373Thr
num of homozygotes: 49
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-100747795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747795
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747795
    reference: chr 0
allele count: 1
allele frequency: 1.511715797430083e-4
allele num: 6615
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3493G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3493G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3493G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4709G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4219G>A
  hgvsp: ENSP00000404304.3:p.Gly1407Ser
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3493G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4709G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1407Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

X-100747806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747806
    reference: chr 0
allele count: 1
allele frequency: 1.380071763731714e-4
allele num: 7246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3504T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4230T>C
  hgvsp: ENST00000423738.3:c.4230T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4720T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3504T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3504T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3504T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4720T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly1410Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

X-100747858-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747858
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747858
    reference: chr 0
allele count: 9
allele frequency: 1.113861386138614e-3
allele num: 8080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3556A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4772A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3556A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3556A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4282A>G
  hgvsp: ENSP00000404304.3:p.Asn1428Asp
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4772A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3556A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Asn1428Asp
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-100747872-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747872
    reference: chr 0
allele count: 1
allele frequency: 1.235025318019019e-4
allele num: 8097
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3570A>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3570A>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4786A>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4296A>C
  hgvsp: ENSP00000404304.3:p.Gln1432His
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4786A>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3570A>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3570A>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln1432His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

X-100747952-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100747952
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100747952
    reference: chr 0
allele count: 3
allele frequency: 3.69321679182568e-4
allele num: 8123
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3650T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4866T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3650T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4376T>C
  hgvsp: ENSP00000404304.3:p.Val1459Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4866T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3650T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3650T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1459Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: FS

X-100748031-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748031
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748031
    reference: chr 0
allele count: 1
allele frequency: 1.201634222542658e-4
allele num: 8322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4945T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4945T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3729T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3729T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3729T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3729T>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4455T>A
  hgvsp: ENSP00000404304.3:p.Asp1485Glu
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp1485Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-100748058-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748058
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748058
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3756T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3756T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4482T>C
  hgvsp: ENST00000423738.3:c.4482T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3756T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4972T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3756T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4972T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1494Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

X-100748078-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748078
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748078
    reference: chr 0
allele count: 8467
allele frequency: 1.0e0
allele num: 8467
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3776A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3776A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4502A>G
  hgvsp: ENSP00000404304.3:p.Asp1501Gly
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4992A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3776A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4992A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3776A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.75e1
  variant carriers: 516
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.25e1
  variant carriers: 719
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.5e0
  variant carriers: 904
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 518
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 9.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 722
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 769
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 6.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 315
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 98
hgvs: p.Asp1501Gly
num of homozygotes: 2221
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-100748081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748081
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748081
    reference: chr 0
allele count: 1
allele frequency: 1.187789523696401e-4
allele num: 8419
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3779C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3779C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4505C>T
  hgvsp: ENSP00000404304.3:p.Thr1502Ile
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.130+4995C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.130+4995C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3779C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3779C>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1502Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-100748129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748129
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748129
    reference: chr 0
allele count: 1
allele frequency: 1.196601651310279e-4
allele num: 8357
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4553C>T
  hgvsp: ENSP00000404304.3:p.Thr1518Met
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-5003C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3827C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-5003C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3827C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3827C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3827C>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1518Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

X-100748130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748130
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748130
    reference: chr 0
allele count: 1
allele frequency: 1.195028680688336e-4
allele num: 8368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3828G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-5002G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4554G>A
  hgvsp: ENST00000423738.3:c.4554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3828G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3828G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3828G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-5002G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1518Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

X-100748164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748164
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748164
    reference: chr 0
allele count: 1
allele frequency: 1.194885888397658e-4
allele num: 8369
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3862G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4968G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3862G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4968G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3862G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4588G>A
  hgvsp: ENSP00000404304.3:p.Asp1530Asn
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3862G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp1530Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

X-100748176-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748176
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748176
    reference: chr 0
allele count: 2
allele frequency: 2.391486308740882e-4
allele num: 8363
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4956T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4600T>C
  hgvsp: ENSP00000404304.3:p.Ser1534Pro
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4956T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3874T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3874T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3874T>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3874T>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1534Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-100748192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748192
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748192
    reference: chr 0
allele count: 2
allele frequency: 2.391772303276728e-4
allele num: 8362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4940C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4616C>T
  hgvsp: ENSP00000404304.3:p.Thr1539Met
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3890C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4940C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3890C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3890C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3890C>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1539Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

X-100748196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748196
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748196
    reference: chr 0
allele count: 1
allele frequency: 1.194029850746269e-4
allele num: 8375
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4620C>T
  hgvsp: ENST00000423738.3:c.4620C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4936C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3894C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3894C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3894C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3894C>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4936C>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn1540Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

X-100748266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748266
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748266
    reference: chr 0
allele count: 1
allele frequency: 1.195171507111271e-4
allele num: 8367
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3964G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3964G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4866G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3964G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4690G>A
  hgvsp: ENSP00000404304.3:p.Ala1564Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3964G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4866G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala1564Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

X-100748278-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748278
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748278
    reference: chr 0
allele count: 1
allele frequency: 1.199616122840691e-4
allele num: 8336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4854G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4702G>T
  hgvsp: ENSP00000404304.3:p.Ala1568Ser
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+3976G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+3976G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4854G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+3976G>T
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+3976G>T
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1568Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-100748324-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748324
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748324
    reference: chr 0
allele count: 53
allele frequency: 6.419573643410853e-3
allele num: 8256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4808G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4022G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4748G>C
  hgvsp: ENSP00000404304.3:p.Gly1583Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4808G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4022G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4022G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4022G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Gly1583Ala
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

X-100748339-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748339
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748339
    reference: chr 0
allele count: 2
allele frequency: 2.418087292951276e-4
allele num: 8271
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4037G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4793G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4763G>C
  hgvsp: ENSP00000404304.3:p.Gly1588Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4037G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4793G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4037G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4037G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly1588Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-100748374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748374
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748374
    reference: chr 0
allele count: 1
allele frequency: 1.205109664979513e-4
allele num: 8298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4072G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4072G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4758G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4072G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4072G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4798G>A
  hgvsp: ENSP00000404304.3:p.Gly1600Arg
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4758G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly1600Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-100748421-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748421
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748421
    reference: chr 0
allele count: 4
allele frequency: 5.048592704783542e-4
allele num: 7923
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4119T>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4119T>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4845T>G
  hgvsp: ENST00000423738.3:c.4845T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4119T>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4711T>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4119T>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4711T>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1615Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

X-100748447-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748447
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748447
    reference: chr 0
allele count: 7
allele frequency: 8.597396217145664e-4
allele num: 8142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4685C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4685C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4145C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4871C>A
  hgvsp: ENSP00000404304.3:p.Pro1624Gln
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4145C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4145C>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4145C>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1624Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-100748528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748528
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748528
    reference: chr 0
allele count: 1
allele frequency: 1.224589762429586e-4
allele num: 8166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4226G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4226G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4604G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4226G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4226G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4952G>A
  hgvsp: ENSP00000404304.3:p.Gly1651Glu
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4604G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly1651Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-100748530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748530
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748530
    reference: chr 0
allele count: 6
allele frequency: 7.343042467262269e-4
allele num: 8171
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4954G>A
  hgvsp: ENSP00000404304.3:p.Asp1652Asn
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4602G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4602G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4228G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4228G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4228G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4228G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp1652Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-100748572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748572
    reference: chr 0
allele count: 10
allele frequency: 1.215953307392996e-3
allele num: 8224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4270G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4270G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.4996G>A
  hgvsp: ENSP00000404304.3:p.Ala1666Thr
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4270G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4560G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4270G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4560G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1666Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

X-100748604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748604
    reference: chr 0
allele count: 1
allele frequency: 1.213150551983501e-4
allele num: 8243
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4302G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4302G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4302G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.5028G>A
  hgvsp: ENST00000423738.3:c.5028G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4528G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4302G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4528G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1676Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-100748675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748675
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748675
    reference: chr 0
allele count: 1
allele frequency: 1.209774981853375e-4
allele num: 8266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4373G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.5099G>A
  hgvsp: ENSP00000404304.3:p.Gly1700Glu
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4373G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4457G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4373G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4373G>A
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4457G>A
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1700Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-100748696-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748696
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748696
    reference: chr 0
allele count: 4
allele frequency: 4.833836858006042e-4
allele num: 8275
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1038+4394G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4436G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.5120G>C
  hgvsp: ENSP00000404304.3:p.Gly1707Ala
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1002+4394G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4436G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1002+4394G>C
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1038+4394G>C
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1707Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-100748723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100748723
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100748723
    reference: chr 0
allele count: 2
allele frequency: 2.412254251598118e-4
allele num: 8291
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000404304
  ensembl transcript: ENST00000423738
  gene symbol: ARMCX4
  hgvsc: ENST00000423738.3:c.5147A>G
  hgvsp: ENSP00000404304.3:p.Gln1716Arg
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000425302
  ensembl transcript: ENST00000452188
  gene symbol: ARMCX4
  hgvsc: ENST00000452188.1:c.1039-4409A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423927
  ensembl transcript: ENST00000354842
  gene symbol: ARMCX4
  hgvsc: ENST00000354842.4:c.1003-4409A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000422573
  ensembl transcript: ENST00000445416
  gene symbol: ARMCX4
  hgvsc: ENST00000445416.1:c.131-4409A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000423440
  ensembl transcript: ENST00000455331
  gene symbol: ARMCX4
  hgvsc: ENST00000455331.1:c.1003-4409A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000426585
  ensembl transcript: ENST00000442270
  gene symbol: ARMCX4
  hgvsc: ENST00000442270.1:c.131-4409A>G
  variant of: http://identifiers.org/hgnc/28615
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196440
  ensembl protein: ENSP00000424452
  ensembl transcript: ENST00000433011
  gene symbol: ARMCX4
  hgvsc: ENST00000433011.1:c.1039-4409A>G
  variant of: http://identifiers.org/hgnc/28615
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln1716Arg
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4557
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.505082369435682e-4
allele num: 2853
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.80276e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

QD
type: SiteQuality
SIO_000300: 3.295e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2859
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.194426157559798e-4
allele num: 4557
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.80514e5

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

QD
type: SiteQuality
SIO_000300: 3.474e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 139
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.536772777167947e-3
allele num: 4555
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.79442e5

QD
type: SiteQuality
SIO_000300: 2.413e1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.506e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.453e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 139
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.036659877800407e-3
allele num: 491
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.7706e5

QD
type: SiteQuality
SIO_000300: 2.571e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

GenotypeQuality
all individuals: 262
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.194426157559798e-4
allele num: 4557
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2845
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.612e1

DP
type: SiteQuality
SIO_000300: 1.77046e5

VQSLOD
type: SiteQuality
SIO_000300: -3.524e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.51123595505618e-4
allele num: 2848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4557
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.77935e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.477e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 4212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.583278472679394e-4
allele num: 4557
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.654e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.036e0

FS
type: SiteQuality
SIO_000300: 9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.865e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.7816e5

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.211180124223602e-3
allele num: 161
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2845
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4557
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.782e0

VQSLOD
type: SiteQuality
SIO_000300: -7.471e0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.819e1

QD
type: SiteQuality
SIO_000300: 1.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.09e-2

DP
type: SiteQuality
SIO_000300: 1.78303e5

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4557
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.512469265893923e-4
allele num: 2847
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e0

DP
type: SiteQuality
SIO_000300: 1.7827e5

FS
type: SiteQuality
SIO_000300: 2.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 4193
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 4.571026722925457e-3
allele num: 2844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4557
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.88e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 1.78319e5

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.75e1
variant carriers: 45

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 224
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.834868887313962e-3
allele num: 2822
num of homozygotes: 0

South Asian
type: Population
allele count: 61
allele frequency: 1.349856162867891e-2
allele num: 4519
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-2
allele num: 87
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.244e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

DP
type: SiteQuality
SIO_000300: 1.68054e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.388e1

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3337
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.75e1
variant carriers: 58

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.142857142857143e-3
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 1.327967806841046e-1
allele num: 497
num of homozygotes: 6

South Asian
type: Population
allele count: 2
allele frequency: 4.436557231588288e-4
allele num: 4508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.546099290780142e-4
allele num: 2820
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.65205e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.19e-2

QD
type: SiteQuality
SIO_000300: 1.693e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

FS
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
all individuals: 129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.229157378510923e-4
allele num: 4486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 1.6043e5

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 343
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.02020202020202e-3
allele num: 495
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 6.91038787338386e-3
allele num: 4486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.60663e5

FS
type: SiteQuality
SIO_000300: 1.745e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.81e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.769e0

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

QD
type: SiteQuality
SIO_000300: 2.199e1

GenotypeQuality
all individuals: 223
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2817
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 3.126395712371595e-3
allele num: 4478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.828e0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.998e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.137e1

DP
type: SiteQuality
SIO_000300: 1.61174e5

GenotypeQuality
all individuals: 317
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2819
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.230649118893598e-4
allele num: 4483
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.542e0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.733e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 2.697e1

DP
type: SiteQuality
SIO_000300: 1.61603e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4473
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.5486160397445e-4
allele num: 2818
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.52e-1

FS
type: SiteQuality
SIO_000300: 4.155e0

DP
type: SiteQuality
SIO_000300: 1.66435e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.626e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
all individuals: 487
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.26295541977823e-4
allele num: 4419
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

InbreedingCoeff
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SIO_000300: -2.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.63381e5

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2721
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.816793893129771e-3
allele num: 4192
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0163e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.3945e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.714710252600297e-4
allele num: 2692
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
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DP
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 3.529827038475115e-4
allele num: 2833
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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ReadPosRankSum
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SIO_000300: -1.039e0

ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 2.409e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 175
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 137
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.451581269919098e-4
allele num: 4079
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2761
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 495
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.84e-1

DP
type: SiteQuality
SIO_000300: 1.48614e5

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: -2.185e0

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 5.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 171
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 7.352941176470588e-3
allele num: 136
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 83
num of homozygotes: 0

African
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allele count: 7
allele frequency: 1.417004048582996e-2
allele num: 494
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3833
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 5.989e0

QD
type: SiteQuality
SIO_000300: 1.364e1

DP
type: SiteQuality
SIO_000300: 1.36302e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2619
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 492
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.094391244870041e-3
allele num: 3655
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.28487e5

FS
type: SiteQuality
SIO_000300: 5.34e-1

MQ
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SIO_000300: 5.94e1

InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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SIO_000300: -4.08e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 65
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 472
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European (Non-Finnish)
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allele count: 1
allele frequency: 4.210526315789474e-4
allele num: 2375
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
allele num: 2866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -4.99e-2

ClippingRankSum
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QD
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VQSLOD
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 2.164502164502165e-3
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

ReadPosRankSum
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.647446457990115e-3
allele num: 1821
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 1.25e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1817
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 7.399103139013453e-2
allele num: 446
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

DP
type: SiteQuality
SIO_000300: 8.5759e4

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.5e1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

GenotypeQuality
all individuals: 2602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
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GenotypeQuality
all individuals: 327
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 6.75e1
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GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 335
bin: 9.75e1
variant carriers: 9

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.345794392523364e-3
allele num: 107
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.454342984409799e-3
allele num: 449
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 4.828326180257511e-3
allele num: 1864
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 147
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

DP
type: SiteQuality
SIO_000300: 8.6273e4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

FS
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-3
allele num: 1651
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 111
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 147
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

FS
type: SiteQuality
SIO_000300: 3.064e0

VQSLOD
type: SiteQuality
SIO_000300: -1.805e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 8.9261e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.18e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.849557522123894e-3
allele num: 113
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.094091903719912e-2
allele num: 457
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 153
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.411e0

DP
type: SiteQuality
SIO_000300: 9.1011e4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 2462
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 71
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.636068613815484e-4
allele num: 2157
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 119
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.818181818181818e-2
allele num: 55
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.727e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

DP
type: SiteQuality
SIO_000300: 1.03237e5

QD
type: SiteQuality
SIO_000300: 1.092e1

FS
type: SiteQuality
SIO_000300: 1.368e0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3409
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 71
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.30762e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.25e-2

QD
type: SiteQuality
SIO_000300: 2.535e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 73
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 131
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 2.346499804458349e-3
allele num: 2557
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.76166804750069e-4
allele num: 3621
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

FS
type: SiteQuality
SIO_000300: 1.298e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 1.3734e5

VQSLOD
type: SiteQuality
SIO_000300: -9.675e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.603e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.17e-1

GenotypeQuality
all individuals: 269
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
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GenotypeQuality
all individuals: 2655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 118
bin: 3.75e1
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GenotypeQuality
all individuals: 93
bin: 5.25e1
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GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3541
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.074688796680498e-3
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 129
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.212e0

DP
type: SiteQuality
SIO_000300: 1.33223e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.81e-2

GenotypeQuality
all individuals: 264
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 7.751937984496124e-3
allele num: 129
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 8.0e-3
allele num: 3500
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.31091e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

FS
type: SiteQuality
SIO_000300: 8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
type: SiteQuality
SIO_000300: 2.367e1

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 41

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 33

GenotypeQuality
all individuals: 329
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2497
bin: 2.25e1
variant carriers: 31

GenotypeQuality
all individuals: 72
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 36

GenotypeQuality
all individuals: 2522
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 157
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 535
bin: 9.75e1
variant carriers: 255

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 17

East Asian
type: Population
allele count: 2
allele frequency: 1.234567901234568e-2
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 310
allele frequency: 9.541397353031703e-2
allele num: 3249
num of homozygotes: 5

Latino
type: Population
allele count: 9
allele frequency: 6.976744186046512e-2
allele num: 129
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 95
allele frequency: 3.959983326385994e-2
allele num: 2399
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 89
allele frequency: 1.869747899159664e-1
allele num: 476
num of homozygotes: 12

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.262e-1

QD
type: SiteQuality
SIO_000300: 1.822e1

DP
type: SiteQuality
SIO_000300: 1.3412e5

VQSLOD
type: SiteQuality
SIO_000300: 1.518e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.851851851851852e-3
allele num: 540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 121
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.381e0

VQSLOD
type: SiteQuality
SIO_000300: -1.793e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 6.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.164e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 7.3286e4

GenotypeQuality
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.604166666666667e-3
allele num: 384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 119
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.29e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.858e0

FS
type: SiteQuality
SIO_000300: 2.011e0

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.082e0

DP
type: SiteQuality
SIO_000300: 6.8097e4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
all individuals: 173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.652892561983471e-2
allele num: 121
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 641
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.535e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.71e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

DP
type: SiteQuality
SIO_000300: 7.6769e4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

FS
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 360
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 1

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 803
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.092198581560284e-4
allele num: 1410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 93
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 127
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.55e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

FS
type: SiteQuality
SIO_000300: 7.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 8.2451e4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.935e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 343
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2699
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 37
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 93
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 8.831521739130434e-3
allele num: 1472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.142857142857143e-3
allele num: 875
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.698e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.3942e4

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 2767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
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GenotypeQuality
all individuals: 396
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 97
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.752194463200541e-4
allele num: 1481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 129
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 399
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.089e0

MQRankSum
type: SiteQuality
SIO_000300: -1.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 8.5029e4

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 547
bin: 9.75e1
variant carriers: 304

GenotypeQuality
all individuals: 48
bin: 7.75e1
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GenotypeQuality
all individuals: 37
bin: 4.75e1
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GenotypeQuality
all individuals: 70
bin: 3.75e1
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GenotypeQuality
all individuals: 2674
bin: 2.25e1
variant carriers: 79

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 52
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 11
allele frequency: 1.07843137254902e-1
allele num: 102
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 4.884318766066838e-2
allele num: 1556
num of homozygotes: 0

South Asian
type: Population
allele count: 124
allele frequency: 1.130355515041021e-1
allele num: 1097
num of homozygotes: 4

East Asian
type: Population
allele count: 2
allele frequency: 1.538461538461539e-2
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 205
allele frequency: 4.723502304147466e-1
allele num: 434
num of homozygotes: 44

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 2.013e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

DP
type: SiteQuality
SIO_000300: 9.2768e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.362e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.085e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.027550711474417e-4
allele num: 3303
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.536999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

DP
type: SiteQuality
SIO_000300: 1.40748e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.971e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.835826620636747e-4
allele num: 2607
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 81
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 135
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3773
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.193e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.53011e5

FS
type: SiteQuality
SIO_000300: 3.367e0

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

GenotypeQuality
all individuals: 2148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 442
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 2.047315741583258e-3
allele num: 4396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 165
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2795
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.426e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 2.506e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.53e-2

DP
type: SiteQuality
SIO_000300: 1.67499e5

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 396
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4411
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 165
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.575259206292456e-4
allele num: 2797
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

FS
type: SiteQuality
SIO_000300: 7.42e0

DP
type: SiteQuality
SIO_000300: 1.66843e5

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.813e1

GenotypeQuality
all individuals: 2169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 238
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 167
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2805
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.778129236330773e-4
allele num: 4426
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 3.318e1

DP
type: SiteQuality
SIO_000300: 1.66182e5

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.197802197802198e-4
allele num: 4550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 173
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 91
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

QD
type: SiteQuality
SIO_000300: 2.734e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

DP
type: SiteQuality
SIO_000300: 1.83735e5

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.741e0

GenotypeQuality
all individuals: 3475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 175
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 91
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

QD
type: SiteQuality
SIO_000300: 3.347e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.83722e5

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.175e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 190
bin: 7.75e1
variant carriers: 190

GenotypeQuality
all individuals: 590
bin: 7.5e0
variant carriers: 590

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 126

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 302

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 30

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 265

GenotypeQuality
all individuals: 107
bin: 6.25e1
variant carriers: 107

GenotypeQuality
all individuals: 4903
bin: 9.75e1
variant carriers: 4903

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 231

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 25

East Asian
type: Population
allele count: 185
allele frequency: 1.0e0
allele num: 185
num of homozygotes: 74

African
type: Population
allele count: 510
allele frequency: 1.0e0
allele num: 510
num of homozygotes: 221

Latino
type: Population
allele count: 140
allele frequency: 1.0e0
allele num: 140
num of homozygotes: 46

South Asian
type: Population
allele count: 4554
allele frequency: 1.0e0
allele num: 4554
num of homozygotes: 747

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.0e0
allele num: 5
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2978
allele frequency: 1.0e0
allele num: 2978
num of homozygotes: 1105

Other
type: Population
allele count: 95
allele frequency: 1.0e0
allele num: 95
num of homozygotes: 26

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.551e-1

DP
type: SiteQuality
SIO_000300: 3.25475e5

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 93
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.396739130434783e-4
allele num: 2944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 183
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.834e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.03476e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 1.359e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2921
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.215330084182543e-4
allele num: 4514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 141
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 181
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

DP
type: SiteQuality
SIO_000300: 1.97945e5

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

QD
type: SiteQuality
SIO_000300: 3.086e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 181
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 141
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.210433244916003e-4
allele num: 4524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

DP
type: SiteQuality
SIO_000300: 1.97924e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.334e1

VQSLOD
type: SiteQuality
SIO_000300: -1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 380
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.199252254233561e-4
allele num: 4547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 141
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 179
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

DP
type: SiteQuality
SIO_000300: 1.98337e5

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 3.029e1

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4545
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2909
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 179
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.032258064516129e-3
allele num: 496
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.14e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

DP
type: SiteQuality
SIO_000300: 1.98946e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.393673110720562e-4
allele num: 4552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2901
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.615e0

DP
type: SiteQuality
SIO_000300: 1.99861e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

FS
type: SiteQuality
SIO_000300: 6.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.16e-2

QD
type: SiteQuality
SIO_000300: 1.847e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.459e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 91
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.195389681668496e-4
allele num: 4555
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 177
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.023e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

QD
type: SiteQuality
SIO_000300: 2.777e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.00385e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 2.202643171806167e-4
allele num: 4540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 181
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

VQSLOD
type: SiteQuality
SIO_000300: -1.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.12e-2

DP
type: SiteQuality
SIO_000300: 1.98841e5

QD
type: SiteQuality
SIO_000300: 2.368e1

MQ
type: SiteQuality
SIO_000300: 5.887e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-2
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 181
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 1.9338e5

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.97e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

GenotypeQuality
all individuals: 383
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2193
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.438848920863309e-2
allele num: 139
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 7.8e-2
allele num: 500
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 4.219409282700422e-3
allele num: 2844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 173
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.503e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 1.87719e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 89
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3238
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 173
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South Asian
type: Population
allele count: 1
allele frequency: 2.212878955521133e-4
allele num: 4519
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.508771929824561e-4
allele num: 2850
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

VQSLOD
type: SiteQuality
SIO_000300: -3.495e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.345e0

QD
type: SiteQuality
SIO_000300: 1.951e1

MQRankSum
type: SiteQuality
SIO_000300: -1.252e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

FS
type: SiteQuality
SIO_000300: 8.99e-1

DP
type: SiteQuality
SIO_000300: 1.88033e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3810
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.2002200220022e-4
allele num: 4545
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 492
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2857
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.065e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.93297e5

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 4.158004158004158e-3
allele num: 481
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 86
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European (Non-Finnish)
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allele count: 2
allele frequency: 7.429420505200594e-4
allele num: 2692
num of homozygotes: 0

European (Finnish)
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East Asian
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allele frequency: 0.0e0
allele num: 163
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.49554367201426e-3
allele num: 2805
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 492
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European (Finnish)
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East Asian
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allele num: 163
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Other
type: Population
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allele num: 85
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

MQ
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BaseQRankSum
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MQRankSum
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QD
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DP
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VQSLOD
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FS
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 773
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.566333808844508e-4
allele num: 2804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 5.52e0

DP
type: SiteQuality
SIO_000300: 1.79051e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

GenotypeQuality
all individuals: 378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 163
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 1.337792642140468e-3
allele num: 4485
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.79838e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 2.958e1

VQSLOD
type: SiteQuality
SIO_000300: -2.752e-1

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 2.032520325203252e-2
allele num: 492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.409e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

DP
type: SiteQuality
SIO_000300: 1.85586e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 3441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.538570417551309e-4
allele num: 2826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 139
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

FS
type: SiteQuality
SIO_000300: 6.106e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

DP
type: SiteQuality
SIO_000300: 1.83651e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.612e0

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
all individuals: 283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.534817956875221e-4
allele num: 2829
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.188e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.90966e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

QD
type: SiteQuality
SIO_000300: 3.142e1

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 7.142857142857143e-3
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.584723441615452e-4
allele num: 4556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.744e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 3.639e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 2.048e1

DP
type: SiteQuality
SIO_000300: 1.93349e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0