19-45992160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992160
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992160
    reference: chr 19
allele count: 5
allele frequency: 6.273840594258182e-5
allele num: 79696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.293G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.72G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1326G>A
  hgvsp: ENST00000587597.1:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2789G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-93C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.504G>A
  hgvsp: ENST00000590526.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*324G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.202G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1107G>A
  hgvsp: ENST00000344680.4:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1326G>A
  hgvsp: ENST00000245923.4:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.306G>A
  hgvsp: ENST00000430715.2:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.164G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19094
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala442Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-45992161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992161
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992161
    reference: chr 19
allele count: 14
allele frequency: 1.751970967338255e-4
allele num: 79910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1325C>T
  hgvsp: ENSP00000468144.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.71C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.292C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2790C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.305C>T
  hgvsp: ENSP00000398178.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1325C>T
  hgvsp: ENSP00000245923.3:p.Ala442Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.201C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1106C>T
  hgvsp: ENSP00000345127.3:p.Ala369Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*323C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.503C>T
  hgvsp: ENSP00000466619.1:p.Ala168Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.163C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-92G>A
  variant of: http://identifiers.org/hgnc/26845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18782
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala442Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

19-45992164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992164
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992164
    reference: chr 19
allele count: 2
allele frequency: 2.457908320019663e-5
allele num: 81370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2793C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1322C>T
  hgvsp: ENSP00000245923.3:p.Ser441Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.302C>T
  hgvsp: ENSP00000398178.1:p.Ser101Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.500C>T
  hgvsp: ENSP00000466619.1:p.Ser167Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.68C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-89G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1322C>T
  hgvsp: ENSP00000468144.1:p.Ser441Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.160C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*320C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1103C>T
  hgvsp: ENSP00000345127.3:p.Ser368Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.198C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.289C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15047
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser441Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-45992171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992171
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992171
    reference: chr 19
allele count: 3
allele frequency: 3.603084240109534e-5
allele num: 83262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1096G>A
  hgvsp: ENSP00000345127.3:p.Val366Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.493G>A
  hgvsp: ENSP00000466619.1:p.Val165Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.153G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1315G>A
  hgvsp: ENSP00000245923.3:p.Val439Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1315G>A
  hgvsp: ENSP00000468144.1:p.Val439Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.295G>A
  hgvsp: ENSP00000398178.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2800G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*313G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.282G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.191G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.61G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val439Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

19-45992172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992172
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992172
    reference: chr 19
allele count: 2
allele frequency: 2.386748770824383e-5
allele num: 83796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.294C>T
  hgvsp: ENST00000430715.2:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.60C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1314C>T
  hgvsp: ENST00000587597.1:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.281C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.152C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.190C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1314C>T
  hgvsp: ENST00000245923.4:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1095C>T
  hgvsp: ENST00000344680.4:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.492C>T
  hgvsp: ENST00000590526.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-81G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2801C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg438Arg
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

19-45992172-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992172
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992172
    reference: chr 19
allele count: 1
allele frequency: 1.193374385412191e-5
allele num: 83796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.60C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*312C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1314C>A
  hgvsp: ENST00000587597.1:c.1314C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1095C>A
  hgvsp: ENST00000344680.4:c.1095C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-81G>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.281C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.492C>A
  hgvsp: ENST00000590526.1:c.492C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.190C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2801C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.294C>A
  hgvsp: ENST00000430715.2:c.294C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.152C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1314C>A
  hgvsp: ENST00000245923.4:c.1314C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg438Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-45992174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992174
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992174
    reference: chr 19
allele count: 23
allele frequency: 2.717969322398431e-4
allele num: 84622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.490C>T
  hgvsp: ENSP00000466619.1:p.Arg164Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1312C>T
  hgvsp: ENSP00000245923.3:p.Arg438Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.279C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1093C>T
  hgvsp: ENSP00000345127.3:p.Arg365Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*310C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1312C>T
  hgvsp: ENSP00000468144.1:p.Arg438Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.292C>T
  hgvsp: ENSP00000398178.1:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2803C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.150C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-79G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.188C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.58C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17088
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg438Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-45992180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992180
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992180
    reference: chr 19
allele count: 1
allele frequency: 1.156952125321054e-5
allele num: 86434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.484A>T
  hgvsp: ENSP00000466619.1:p.Thr162Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.286A>T
  hgvsp: ENSP00000398178.1:p.Thr96Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.144A>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1306A>T
  hgvsp: ENSP00000245923.3:p.Thr436Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2809A>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1306A>T
  hgvsp: ENSP00000468144.1:p.Thr436Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.182A>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-73T>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.52A>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*304A>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1087A>T
  hgvsp: ENSP00000345127.3:p.Thr363Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.273A>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr436Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

19-45992181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992181
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992181
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 87044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.51C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.285C>T
  hgvsp: ENST00000430715.2:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1086C>T
  hgvsp: ENST00000344680.4:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1305C>T
  hgvsp: ENST00000245923.4:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*303C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.272C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.181C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.483C>T
  hgvsp: ENST00000590526.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2810C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-72G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.143C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1305C>T
  hgvsp: ENST00000587597.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16206
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile435Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

19-45992195-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992195
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992195
    reference: chr 19
allele count: 1
allele frequency: 1.108156028368794e-5
allele num: 90240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-58A>G
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*289T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1072T>C
  hgvsp: ENST00000344680.4:c.1072T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.129T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2824T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.258T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1291T>C
  hgvsp: ENST00000587597.1:c.1291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.37T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.469T>C
  hgvsp: ENST00000590526.1:c.469T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.271T>C
  hgvsp: ENST00000430715.2:c.271T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1291T>C
  hgvsp: ENST00000245923.4:c.1291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.167T>C
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu431Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-45992197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992197
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992197
    reference: chr 19
allele count: 3
allele frequency: 3.321449923606652e-5
allele num: 90322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.269G>A
  hgvsp: ENSP00000398178.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1070G>A
  hgvsp: ENSP00000345127.3:p.Arg357His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1289G>A
  hgvsp: ENSP00000245923.3:p.Arg430His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.467G>A
  hgvsp: ENSP00000466619.1:p.Arg156His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.35G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.165G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*287G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.256G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1289G>A
  hgvsp: ENSP00000468144.1:p.Arg430His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-56C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2826G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.127G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg430His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-45992198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992198
    reference: chr 19
allele count: 2
allele frequency: 2.209017208244052e-5
allele num: 90538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.126C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.466C>T
  hgvsp: ENSP00000466619.1:p.Arg156Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.255C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.34C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*286C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1288C>T
  hgvsp: ENSP00000245923.3:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-55G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2827C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1069C>T
  hgvsp: ENSP00000345127.3:p.Arg357Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1288C>T
  hgvsp: ENSP00000468144.1:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.268C>T
  hgvsp: ENSP00000398178.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.164C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg430Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-45992202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992202
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992202
    reference: chr 19
allele count: 11
allele frequency: 1.210227522774282e-4
allele num: 90892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.264G>A
  hgvsp: ENST00000430715.2:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.160G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-51C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*282G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1284G>A
  hgvsp: ENST00000587597.1:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.251G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.462G>A
  hgvsp: ENST00000590526.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1065G>A
  hgvsp: ENST00000344680.4:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2831G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1284G>A
  hgvsp: ENST00000245923.4:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.122G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.30G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21761
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr428Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-45992203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992203
    reference: chr 19
allele count: 2
allele frequency: 2.191684748065838e-5
allele num: 91254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1064C>T
  hgvsp: ENSP00000345127.3:p.Thr355Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.159C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.121C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*281C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.461C>T
  hgvsp: ENSP00000466619.1:p.Thr154Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1283C>T
  hgvsp: ENSP00000245923.3:p.Thr428Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.263C>T
  hgvsp: ENSP00000398178.1:p.Thr88Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1283C>T
  hgvsp: ENSP00000468144.1:p.Thr428Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.29C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.250C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2832C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr428Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-45992203-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992203
    reference: chr 19
allele count: 2
allele frequency: 2.191684748065838e-5
allele num: 91254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.250C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.29C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.461C>A
  hgvsp: ENSP00000466619.1:p.Thr154Lys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.263C>A
  hgvsp: ENSP00000398178.1:p.Thr88Lys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1283C>A
  hgvsp: ENSP00000468144.1:p.Thr428Lys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1064C>A
  hgvsp: ENSP00000345127.3:p.Thr355Lys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-50G>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.121C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1283C>A
  hgvsp: ENSP00000245923.3:p.Thr428Lys
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.159C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*281C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2832C>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr428Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-45992211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992211
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992211
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 92514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.453G>A
  hgvsp: ENST00000590526.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1275G>A
  hgvsp: ENST00000587597.1:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.151G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2840G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*273G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.21G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.113G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1056G>A
  hgvsp: ENST00000344680.4:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.242G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.255G>A
  hgvsp: ENST00000430715.2:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1275G>A
  hgvsp: ENST00000245923.4:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg425Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

19-45992212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992212
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992212
    reference: chr 19
allele count: 55
allele frequency: 5.952509794584298e-4
allele num: 92398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.452G>A
  hgvsp: ENSP00000466619.1:p.Arg151Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.112G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.254G>A
  hgvsp: ENSP00000398178.1:p.Arg85Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1274G>A
  hgvsp: ENSP00000245923.3:p.Arg425Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.241G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.150G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.20G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1274G>A
  hgvsp: ENSP00000468144.1:p.Arg425Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2841G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*272G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1055G>A
  hgvsp: ENSP00000345127.3:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Arg425Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

19-45992213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992213
    reference: chr 19
allele count: 25
allele frequency: 2.703871944624702e-4
allele num: 92460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.451C>T
  hgvsp: ENSP00000466619.1:p.Arg151Trp
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1273C>T
  hgvsp: ENSP00000468144.1:p.Arg425Trp
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.253C>T
  hgvsp: ENSP00000398178.1:p.Arg85Trp
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.240C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*271C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1054C>T
  hgvsp: ENSP00000345127.3:p.Arg352Trp
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1273C>T
  hgvsp: ENSP00000245923.3:p.Arg425Trp
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-40G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.19C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.149C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2842C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.111C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22503
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg425Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

19-45992220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992220
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992220
    reference: chr 19
allele count: 1
allele frequency: 1.071076646244805e-5
allele num: 93364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.104C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.246C>T
  hgvsp: ENST00000430715.2:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1047C>T
  hgvsp: ENST00000344680.4:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.444C>T
  hgvsp: ENST00000590526.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*264C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.142C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1266C>T
  hgvsp: ENST00000245923.4:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1266C>T
  hgvsp: ENST00000587597.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-33G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.233C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2849C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr422Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-45992221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992221
    reference: chr 19
allele count: 1
allele frequency: 1.06951871657754e-5
allele num: 93500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.141C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2850C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1265C>T
  hgvsp: ENSP00000468144.1:p.Thr422Ile
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*263C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1265C>T
  hgvsp: ENSP00000245923.3:p.Thr422Ile
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.232C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.443C>T
  hgvsp: ENSP00000466619.1:p.Thr148Ile
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.11C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.245C>T
  hgvsp: ENSP00000398178.1:p.Thr82Ile
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1046C>T
  hgvsp: ENSP00000345127.3:p.Thr349Ile
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.103C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr422Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

19-45992221-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992221
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992221
    reference: chr 19
allele count: 9
allele frequency: 9.625668449197861e-5
allele num: 93500
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1265C>A
  hgvsp: ENSP00000245923.3:p.Thr422Asn
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.11C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.232C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2850C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1046C>A
  hgvsp: ENSP00000345127.3:p.Thr349Asn
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.443C>A
  hgvsp: ENSP00000466619.1:p.Thr148Asn
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-32G>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*263C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.245C>A
  hgvsp: ENSP00000398178.1:p.Thr82Asn
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1265C>A
  hgvsp: ENSP00000468144.1:p.Thr422Asn
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.141C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.103C>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23282
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr422Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

19-45992229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992229
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992229
    reference: chr 19
allele count: 2
allele frequency: 2.141511050197019e-5
allele num: 93392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1257G>A
  hgvsp: ENST00000587597.1:c.1257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.224G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.435G>A
  hgvsp: ENST00000590526.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1038G>A
  hgvsp: ENST00000344680.4:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.237G>A
  hgvsp: ENST00000430715.2:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1257G>A
  hgvsp: ENST00000245923.4:c.1257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.95G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.133G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2858G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8696
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val419Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-45992231-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992231
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992231
    reference: chr 19
allele count: 1
allele frequency: 1.070663811563169e-5
allele num: 93400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2860G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1255G>A
  hgvsp: ENSP00000468144.1:p.Val419Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.222G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1036G>A
  hgvsp: ENSP00000345127.3:p.Val346Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.235G>A
  hgvsp: ENSP00000398178.1:p.Val79Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1255G>A
  hgvsp: ENSP00000245923.3:p.Val419Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*253G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000591789
  gene symbol: RTN2
  hgvsc: ENST00000591789.1:n.1G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.433G>A
  hgvsp: ENSP00000466619.1:p.Val145Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.131G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.93G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val419Met
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-45992235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992235
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992235
    reference: chr 19
allele count: 3
allele frequency: 3.218607844820187e-5
allele num: 93208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.429G>A
  hgvsp: ENST00000590526.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*249G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1032G>A
  hgvsp: ENST00000344680.4:c.1032G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.89G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1251G>A
  hgvsp: ENST00000587597.1:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.231G>A
  hgvsp: ENST00000430715.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2864G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.127G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1251G>A
  hgvsp: ENST00000245923.4:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.218G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-18C>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-45992237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992237
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992237
    reference: chr 19
allele count: 2
allele frequency: 2.14938205265986e-5
allele num: 93050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.229C>T
  hgvsp: ENST00000430715.2:c.229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1249C>T
  hgvsp: ENST00000587597.1:c.1249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1249C>T
  hgvsp: ENST00000245923.4:c.1249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.216C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.87C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2866C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.427C>T
  hgvsp: ENST00000590526.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1030C>T
  hgvsp: ENST00000344680.4:c.1030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*247C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.125C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20298
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-16G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-45992243-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992243
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992243
    reference: chr 19
allele count: 2
allele frequency: 2.163799632154063e-5
allele num: 92430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+6C>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1243G>T
  hgvsp: ENSP00000468144.1:p.Ala415Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.210G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*241G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1243G>T
  hgvsp: ENSP00000245923.3:p.Ala415Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.421G>T
  hgvsp: ENSP00000466619.1:p.Ala141Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.81G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.119G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1024G>T
  hgvsp: ENSP00000345127.3:p.Ala342Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.223G>T
  hgvsp: ENSP00000398178.1:p.Ala75Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2872G>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala415Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

19-45992244-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992244
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992244
    reference: chr 19
allele count: 1
allele frequency: 1.082626017668457e-5
allele num: 92368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222G>C
  hgvsp: ENSP00000398178.1:p.Gln74His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2873G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+7C>G
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242G>C
  hgvsp: ENSP00000245923.3:p.Gln414His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242G>C
  hgvsp: ENSP00000468144.1:p.Gln414His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.118G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420G>C
  hgvsp: ENSP00000466619.1:p.Gln140His
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023G>C
  hgvsp: ENSP00000345127.3:p.Gln341His
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13277
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln414His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-45992248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992248
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992248
    reference: chr 19
allele count: 4
allele frequency: 4.374740249797668e-5
allele num: 91434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.114G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2877G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-4G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+11C>T
  variant of: http://identifiers.org/hgnc/26845
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13325
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1242-4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

19-45992249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992249
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992249
    reference: chr 19
allele count: 1
allele frequency: 1.090607686602975e-5
allele num: 91692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.113C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2878C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-5C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+12G>A
  variant of: http://identifiers.org/hgnc/26845
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1242-5C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-45992261-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992261
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992261
    reference: chr 19
allele count: 1
allele frequency: 1.0972853161279e-5
allele num: 91134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+24G>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.101C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2890C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-17C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-17C>A
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-45992269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992269
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992269
    reference: chr 19
allele count: 1
allele frequency: 1.110592834455032e-5
allele num: 90042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.93G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2898G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+32C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-25G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-25G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18143
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/19-45992271-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992271
    reference: chr 19
allele count: 2
allele frequency: 2.220199373903777e-5
allele num: 90082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+34A>C
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.91T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2900T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-27T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-27T>G
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

19-45992276-GTGGGTGACCAGCTCAGAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992276
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992258
    reference: chr 19
allele count: 1
allele frequency: 1.118443127166983e-5
allele num: 89410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: GTGGGTGACCAGCTCAGAC
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

19-45992277-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992277
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992276
    reference: chr 19
allele count: 1
allele frequency: 1.120850052679953e-5
allele num: 89218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2907delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.84delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+43delG
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-34delC
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-34delC
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: TG
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

19-45992282-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992282
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992281
    reference: chr 19
allele count: 1
allele frequency: 1.142804900347413e-5
allele num: 87504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2912delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.79delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+46delA
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-39delT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-39delT
  variant of: http://identifiers.org/hgnc/10468
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: GA
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-45992284-C-CAGGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992284
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992289
    reference: chr 19
allele count: 1
allele frequency: 1.142778780883597e-5
allele num: 87506
alternate allele: CAGGGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-2914_62-2913insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1023-41_1023-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*240-41_*240-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1242-41_1242-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1242-41_1242-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-41_80-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.420-41_420-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.222-41_222-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000593129
  gene symbol: RTN2
  hgvsc: ENST00000593129.1:n.77_78insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.209-41_209-40insCCCCT
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+47_-16+48insAGGGG
  variant of: http://identifiers.org/hgnc/26845
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-45992553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992553
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992553
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 19714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-309G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.208+51G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1022+51G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.419+51G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1241+51G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1241+51G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*239+51G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+316C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3182G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.221+51G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-45992563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992563
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992563
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 19772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.208+41C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1241+41C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1022+41C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*239+41C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+326G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3192C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1241+41C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.419+41C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-319C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.221+41C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-45992574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992574
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992574
    reference: chr 19
allele count: 10
allele frequency: 4.988028731045491e-4
allele num: 20048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.419+30C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+337G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3203C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*239+30C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1241+30C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-330C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1022+30C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.208+30C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1241+30C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.221+30C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36082
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

19-45992591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992591
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992591
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 20752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1241+13G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.221+13G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.419+13G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3220G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*239+13G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1241+13G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+354C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1022+13G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-347G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.208+13G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30493
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-45992592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992592
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992592
    reference: chr 19
allele count: 2
allele frequency: 9.550186228631458e-5
allele num: 20942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1022+12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1241+12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.419+12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.221+12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.208+12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*239+12C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-348C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+355G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3221C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1241+12C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14069
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32738
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30287
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

19-45992601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992601
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992601
    reference: chr 19
allele count: 1
allele frequency: 4.55000455000455e-5
allele num: 21978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+364C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.419+3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3230G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.221+3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1241+3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1241+3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*239+3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1022+3G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-357G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.208+3G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1241+3G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-45992607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992607
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992607
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 22706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1238T>C
  hgvsp: ENSP00000468144.1:p.Phe413Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+370A>G
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.416T>C
  hgvsp: ENSP00000466619.1:p.Phe139Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3236T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*236T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.205T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.218T>C
  hgvsp: ENSP00000398178.1:p.Phe73Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-363T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1019T>C
  hgvsp: ENSP00000345127.3:p.Phe340Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1238T>C
  hgvsp: ENSP00000245923.3:p.Phe413Ser
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22358
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24255
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe413Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

19-45992615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992615
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992615
    reference: chr 19
allele count: 1
allele frequency: 4.187955440154116e-5
allele num: 23878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.1011C>T
  hgvsp: ENST00000344680.4:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.210C>T
  hgvsp: ENST00000430715.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.197C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+378G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1230C>T
  hgvsp: ENST00000245923.4:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3244C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-371C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1230C>T
  hgvsp: ENST00000587597.1:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.408C>T
  hgvsp: ENST00000590526.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25798
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala410Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/19-45992628-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992628
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992628
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 28072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-384G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*215G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3257G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+391C>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1217G>T
  hgvsp: ENSP00000468144.1:p.Arg406Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.395G>T
  hgvsp: ENSP00000466619.1:p.Arg132Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.197G>T
  hgvsp: ENSP00000398178.1:p.Arg66Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.998G>T
  hgvsp: ENSP00000345127.3:p.Arg333Leu
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.184G>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1217G>T
  hgvsp: ENSP00000245923.3:p.Arg406Leu
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Arg406Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-45992628-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992628
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992628
    reference: chr 19
allele count: 9
allele frequency: 3.206041607295526e-4
allele num: 28072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*215G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.197G>C
  hgvsp: ENSP00000398178.1:p.Arg66Pro
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.998G>C
  hgvsp: ENSP00000345127.3:p.Arg333Pro
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1217G>C
  hgvsp: ENSP00000468144.1:p.Arg406Pro
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1217G>C
  hgvsp: ENSP00000245923.3:p.Arg406Pro
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+391C>G
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-384G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.184G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.395G>C
  hgvsp: ENSP00000466619.1:p.Arg132Pro
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3257G>C
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31062
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg406Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-45992628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992628
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992628
    reference: chr 19
allele count: 6
allele frequency: 2.13736107153035e-4
allele num: 28072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-384G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.184G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*215G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.998G>A
  hgvsp: ENSP00000345127.3:p.Arg333Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.395G>A
  hgvsp: ENSP00000466619.1:p.Arg132Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1217G>A
  hgvsp: ENSP00000468144.1:p.Arg406Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.197G>A
  hgvsp: ENSP00000398178.1:p.Arg66Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+391C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3257G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1217G>A
  hgvsp: ENSP00000245923.3:p.Arg406Gln
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31062
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7564
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg406Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-45992635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992635
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992635
    reference: chr 19
allele count: 3
allele frequency: 9.583439815997956e-5
allele num: 31304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1210G>A
  hgvsp: ENSP00000468144.1:p.Val404Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.388G>A
  hgvsp: ENSP00000466619.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-391G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.177G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.190G>A
  hgvsp: ENSP00000398178.1:p.Val64Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3264G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1210G>A
  hgvsp: ENSP00000245923.3:p.Val404Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.991G>A
  hgvsp: ENSP00000345127.3:p.Val331Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+398C>T
  variant of: http://identifiers.org/hgnc/26845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33170
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val404Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

19-45992636-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992636
    reference: chr 19
allele count: 5
allele frequency: 1.546838262591264e-4
allele num: 32324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.189C>T
  hgvsp: ENST00000430715.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.387C>T
  hgvsp: ENST00000590526.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-392C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*207C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3265C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1209C>T
  hgvsp: ENST00000587597.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.990C>T
  hgvsp: ENST00000344680.4:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.176C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+399G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1209C>T
  hgvsp: ENST00000245923.4:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala403Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

19-45992651-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992651
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992651
    reference: chr 19
allele count: 1
allele frequency: 2.311176851252658e-5
allele num: 43268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+414G>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.174C>A
  hgvsp: ENST00000430715.2:c.174C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3280C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*192C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.975C>A
  hgvsp: ENST00000344680.4:c.975C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.161C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-407C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1194C>A
  hgvsp: ENST00000245923.4:c.1194C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1194C>A
  hgvsp: ENST00000587597.1:c.1194C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.372C>A
  hgvsp: ENST00000590526.1:c.372C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg398Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

19-45992660-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992660
    reference: chr 19
allele count: 1
allele frequency: 1.957253581774055e-5
allele num: 51092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.363G>C
  hgvsp: ENSP00000466619.1:p.Arg121Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*183G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+423C>G
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1185G>C
  hgvsp: ENSP00000468144.1:p.Arg395Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.966G>C
  hgvsp: ENSP00000345127.3:p.Arg322Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1185G>C
  hgvsp: ENSP00000245923.3:p.Arg395Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.165G>C
  hgvsp: ENSP00000398178.1:p.Arg55Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3289G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.152G>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-416G>C
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg395Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

19-45992663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992663
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992663
    reference: chr 19
allele count: 1
allele frequency: 1.876172607879925e-5
allele num: 53300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.149C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-419C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.360C>T
  hgvsp: ENST00000590526.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.963C>T
  hgvsp: ENST00000344680.4:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.162C>T
  hgvsp: ENST00000430715.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1182C>T
  hgvsp: ENST00000587597.1:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1182C>T
  hgvsp: ENST00000245923.4:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3292C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+426G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*180C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu394Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-45992664-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992664
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992664
    reference: chr 19
allele count: 1
allele frequency: 1.844473956027741e-5
allele num: 54216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1181T>G
  hgvsp: ENSP00000468144.1:p.Leu394Arg
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3293T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.359T>G
  hgvsp: ENSP00000466619.1:p.Leu120Arg
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+427A>C
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*179T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.962T>G
  hgvsp: ENSP00000345127.3:p.Leu321Arg
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.148T>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.161T>G
  hgvsp: ENSP00000398178.1:p.Leu54Arg
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1181T>G
  hgvsp: ENSP00000245923.3:p.Leu394Arg
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-420T>G
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30592
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu394Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

19-45992669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992669
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992669
    reference: chr 19
allele count: 3
allele frequency: 5.209418628881017e-5
allele num: 57588
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1176C>T
  hgvsp: ENST00000245923.4:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+432G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.354C>T
  hgvsp: ENST00000590526.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1176C>T
  hgvsp: ENST00000587597.1:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.143C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*174C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.957C>T
  hgvsp: ENST00000344680.4:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-425C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.156C>T
  hgvsp: ENST00000430715.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3298C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile392Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-45992677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992677
    reference: chr 19
allele count: 302
allele frequency: 4.668418611841088e-3
allele num: 64690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.148G>A
  hgvsp: ENSP00000398178.1:p.Gly50Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+440C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1168G>A
  hgvsp: ENSP00000468144.1:p.Gly390Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.949G>A
  hgvsp: ENSP00000345127.3:p.Gly317Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.135G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1168G>A
  hgvsp: ENSP00000245923.3:p.Gly390Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.346G>A
  hgvsp: ENSP00000466619.1:p.Gly116Ser
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-433G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3306G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16886
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26482
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6420
  bin: 1.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 4.75e1
  variant carriers: 4
hgvs: p.Gly390Ser
num of homozygotes: 1
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

19-45992678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992678
    reference: chr 19
allele count: 5
allele frequency: 7.551045064636945e-5
allele num: 66216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1167C>T
  hgvsp: ENST00000587597.1:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.134C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3307C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.147C>T
  hgvsp: ENST00000430715.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-434C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.948C>T
  hgvsp: ENST00000344680.4:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1167C>T
  hgvsp: ENST00000245923.4:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.345C>T
  hgvsp: ENST00000590526.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+441G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*165C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17538
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys389Cys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-45992681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992681
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992681
    reference: chr 19
allele count: 7
allele frequency: 9.766169987164462e-5
allele num: 71676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+444G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.945C>T
  hgvsp: ENST00000344680.4:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1164C>T
  hgvsp: ENST00000587597.1:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-437C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.342C>T
  hgvsp: ENST00000590526.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.144C>T
  hgvsp: ENST00000430715.2:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*162C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1164C>T
  hgvsp: ENST00000245923.4:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3310C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.131C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20422
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu388Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

19-45992681-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992681
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992681
    reference: chr 19
allele count: 1
allele frequency: 1.395167141023495e-5
allele num: 71676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*162C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.131C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1164C>G
  hgvsp: ENST00000245923.4:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1164C>G
  hgvsp: ENST00000587597.1:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.945C>G
  hgvsp: ENST00000344680.4:c.945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+444G>C
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.342C>G
  hgvsp: ENST00000590526.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3310C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.144C>G
  hgvsp: ENST00000430715.2:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-437C>G
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20422
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu388Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

19-45992686-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992686
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992686
    reference: chr 19
allele count: 2
allele frequency: 2.623501324868169e-5
allele num: 76234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.940C>A
  hgvsp: ENSP00000345127.3:p.Leu314Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*157C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-442C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1159C>A
  hgvsp: ENSP00000468144.1:p.Leu387Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3315C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.126C>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+449G>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1159C>A
  hgvsp: ENSP00000245923.3:p.Leu387Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.337C>A
  hgvsp: ENSP00000466619.1:p.Leu113Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.139C>A
  hgvsp: ENSP00000398178.1:p.Leu47Met
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu387Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-45992698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992698
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992698
    reference: chr 19
allele count: 2
allele frequency: 2.367984844896993e-5
allele num: 84460
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1147T>C
  hgvsp: ENST00000245923.4:c.1147T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.325T>C
  hgvsp: ENST00000590526.1:c.325T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+461A>G
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.114T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.127T>C
  hgvsp: ENST00000430715.2:c.127T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1147T>C
  hgvsp: ENST00000587597.1:c.1147T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.928T>C
  hgvsp: ENST00000344680.4:c.928T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-454T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*145T>C
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3327T>C
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu383Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-45992699-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992699
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992699
    reference: chr 19
allele count: 2
allele frequency: 2.348851411659698e-5
allele num: 85148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.324C>G
  hgvsp: ENSP00000466619.1:p.His108Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.927C>G
  hgvsp: ENSP00000345127.3:p.His309Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.113C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1146C>G
  hgvsp: ENSP00000468144.1:p.His382Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+462G>C
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-455C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.126C>G
  hgvsp: ENSP00000398178.1:p.His42Gln
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3328C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*144C>G
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1146C>G
  hgvsp: ENSP00000245923.3:p.His382Gln
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27102
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His382Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-45992702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992702
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992702
    reference: chr 19
allele count: 842
allele frequency: 9.630121005558479e-3
allele num: 87434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.123G>A
  hgvsp: ENST00000430715.2:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.110G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-458G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3331G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1143G>A
  hgvsp: ENST00000245923.4:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.924G>A
  hgvsp: ENST00000344680.4:c.924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1143G>A
  hgvsp: ENST00000587597.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.321G>A
  hgvsp: ENST00000590526.1:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+465C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*141G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 1.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 16027
  bin: 7.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 27583
  bin: 2.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 5
hgvs: p.Ala381Ala
num of homozygotes: 4
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

19-45992703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992703
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992703
    reference: chr 19
allele count: 2
allele frequency: 2.251187501406992e-5
allele num: 88842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-459C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.923C>T
  hgvsp: ENSP00000345127.3:p.Ala308Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*140C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.109C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.122C>T
  hgvsp: ENSP00000398178.1:p.Ala41Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1142C>T
  hgvsp: ENSP00000468144.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3332C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1142C>T
  hgvsp: ENSP00000245923.3:p.Ala381Val
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+466G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.320C>T
  hgvsp: ENSP00000466619.1:p.Ala107Val
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28220
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala381Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-45992704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992704
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992704
    reference: chr 19
allele count: 1
allele frequency: 1.12082492714638e-5
allele num: 89220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.319G>A
  hgvsp: ENSP00000466619.1:p.Ala107Thr
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1141G>A
  hgvsp: ENSP00000468144.1:p.Ala381Thr
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1141G>A
  hgvsp: ENSP00000245923.3:p.Ala381Thr
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*139G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.121G>A
  hgvsp: ENSP00000398178.1:p.Ala41Thr
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3333G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+467C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-460G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.922G>A
  hgvsp: ENSP00000345127.3:p.Ala308Thr
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.108G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16606
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala381Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-45992705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992705
    reference: chr 19
allele count: 2
allele frequency: 2.21690165824244e-5
allele num: 90216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.921C>T
  hgvsp: ENST00000344680.4:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3334C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.120C>T
  hgvsp: ENST00000430715.2:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.107C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.318C>T
  hgvsp: ENST00000590526.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1140C>T
  hgvsp: ENST00000587597.1:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-461C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1140C>T
  hgvsp: ENST00000245923.4:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+468G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala380Ala
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

19-45992710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992710
    reference: chr 19
allele count: 14
allele frequency: 1.490789053348951e-4
allele num: 93910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.916G>A
  hgvsp: ENSP00000345127.3:p.Val306Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.313G>A
  hgvsp: ENSP00000466619.1:p.Val105Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.102G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1135G>A
  hgvsp: ENSP00000245923.3:p.Val379Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-466G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1135G>A
  hgvsp: ENSP00000468144.1:p.Val379Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.115G>A
  hgvsp: ENSP00000398178.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3339G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+473C>T
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30728
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val379Met
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

19-45992711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992711
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992711
    reference: chr 19
allele count: 5
allele frequency: 5.292237346260505e-5
allele num: 94478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1134C>T
  hgvsp: ENST00000587597.1:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.915C>T
  hgvsp: ENST00000344680.4:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1134C>T
  hgvsp: ENST00000245923.4:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+474G>A
  variant of: http://identifiers.org/hgnc/26845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.312C>T
  hgvsp: ENST00000590526.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.114C>T
  hgvsp: ENST00000430715.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3340C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.101C>T
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-467C>T
  variant of: http://identifiers.org/hgnc/10468
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser378Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

19-45992716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45992716
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 45992716
    reference: chr 19
allele count: 4
allele frequency: 4.157053480493026e-5
allele num: 96222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000468144
  ensembl transcript: ENST00000587597
  gene symbol: RTN2
  hgvsc: ENST00000587597.1:c.1129G>A
  hgvsp: ENSP00000468144.1:p.Val377Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000466619
  ensembl transcript: ENST00000590526
  gene symbol: RTN2
  hgvsc: ENST00000590526.1:c.307G>A
  hgvsp: ENSP00000466619.1:p.Val103Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000398178
  ensembl transcript: ENST00000430715
  gene symbol: RTN2
  hgvsc: ENST00000430715.2:c.109G>A
  hgvsp: ENSP00000398178.1:p.Val37Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000589628
  gene symbol: RTN2
  hgvsc: ENST00000589628.1:n.96G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000588036
  gene symbol: RTN2
  hgvsc: ENST00000588036.1:n.80-472G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000345127
  ensembl transcript: ENST00000344680
  gene symbol: RTN2
  hgvsc: ENST00000344680.4:c.910G>A
  hgvsp: ENSP00000345127.3:p.Val304Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000245923
  ensembl transcript: ENST00000245923
  gene symbol: RTN2
  hgvsc: ENST00000245923.4:c.1129G>A
  hgvsp: ENSP00000245923.3:p.Val377Met
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125744
  ensembl transcript: ENST00000590746
  gene symbol: RTN2
  hgvsc: ENST00000590746.1:n.62-3345G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125744
  ensembl protein: ENSP00000467863
  ensembl transcript: ENST00000591286
  gene symbol: RTN2
  hgvsc: ENST00000591286.1:c.*127G>A
  variant of: http://identifiers.org/hgnc/10468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213889
  ensembl protein: ENSP00000384318
  ensembl transcript: ENST00000401705
  gene symbol: PPM1N
  hgvsc: ENST00000401705.1:c.-16+479C>T
  variant of: http://identifiers.org/hgnc/26845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36519
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val377Met
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 37
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1155
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.887052341597796e-4
allele num: 2904
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.494595044071179e-4
allele num: 12026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 3.518e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

DP
type: SiteQuality
SIO_000300: 9.67501e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 37
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 618
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 9.75e1
variant carriers: 13

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.436426116838488e-4
allele num: 2910
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 9.139248919906946e-4
allele num: 12036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.306446750785927e-5
allele num: 46442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 1.773e0

QD
type: SiteQuality
SIO_000300: 1.12e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

DP
type: SiteQuality
SIO_000300: 9.76127e5

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21998
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.381978993919292e-4
allele num: 7236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.115596175002115e-5
allele num: 47268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.187e0

DP
type: SiteQuality
SIO_000300: 9.86988e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.185e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 7.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.83e-1

GenotypeDepth
all individuals: 36
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1948
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 2
allele frequency: 2.71370420624152e-4
allele num: 7370
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48300
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.652892561983471e-4
allele num: 6050
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
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SIO_000300: -4.7e-3

DP
type: SiteQuality
SIO_000300: 1.00987e6

QD
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SIO_000300: 1.594e1

FS
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
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SIO_000300: -3.86e-1

VQSLOD
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SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.272251308900524e-4
allele num: 6112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48572
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3086
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.015356e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.089e1

InbreedingCoeff
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SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 2.655e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
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SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21310
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.749475157452764e-4
allele num: 5716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

BaseQRankSum
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SIO_000300: 2.44e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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QD
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SIO_000300: 1.089e1

FS
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SIO_000300: 2.655e0

ReadPosRankSum
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SIO_000300: 1.81e-1

ClippingRankSum
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SIO_000300: 7.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

DP
type: SiteQuality
SIO_000300: 1.015356e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.076308495026904e-5
allele num: 49064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.544188537761114e-3
allele num: 7468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.697792869269949e-4
allele num: 5890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.622849724115547e-4
allele num: 6162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 2.158e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

FS
type: SiteQuality
SIO_000300: 2.473e0

VQSLOD
type: SiteQuality
SIO_000300: -5.078e-1

DP
type: SiteQuality
SIO_000300: 1.030528e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12434
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.998241547438254e-5
allele num: 50044
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
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ReadPosRankSum
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SIO_000300: -1.401e0

VQSLOD
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MQ
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SIO_000300: 6.0e1

QD
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BaseQRankSum
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SIO_000300: 8.3e-1

InbreedingCoeff
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SIO_000300: -4.2e-3

ClippingRankSum
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SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50308
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.051919e6

ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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MQRankSum
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SIO_000300: 1.16e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.288659793814433e-4
allele num: 7760
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.761696243374049e-5
allele num: 52068
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.962e1

FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -2.22e-1

ReadPosRankSum
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SIO_000300: -2.9e-1

DP
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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allele frequency: 1.495662578522285e-4
allele num: 6686
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12734
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52184
num of homozygotes: 0

Latino
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allele frequency: 1.400560224089636e-4
allele num: 7140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3392
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: 3.06e-1

InbreedingCoeff
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SIO_000300: -2.3e-3

DP
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SIO_000300: 1.09153e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

QD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 9
allele frequency: 1.158301158301158e-3
allele num: 7770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.822191644689064e-5
allele num: 52326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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DP
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -2.9e-3

VQSLOD
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BaseQRankSum
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SIO_000300: 9.77e-1

ClippingRankSum
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SIO_000300: -4.67e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52562
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.563232765358762e-4
allele num: 12794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
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VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 1.100079e6

FS
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SIO_000300: 8.141e0

InbreedingCoeff
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SIO_000300: 3.2e-3

MQRankSum
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SIO_000300: 3.58e-1

ClippingRankSum
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.805030249990488e-5
allele num: 52562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.2e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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Other
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allele frequency: 0.0e0
allele num: 650
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 52
allele frequency: 6.641123882503193e-3
allele num: 7830
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.764776748738799e-5
allele num: 53124
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.311303435615001e-4
allele num: 7626
num of homozygotes: 0

Other
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FS
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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MQ
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53180
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.478829389788294e-3
allele num: 12848
num of homozygotes: 0

African
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allele count: 6
allele frequency: 7.672634271099745e-4
allele num: 7820
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 6.7e-2

QD
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DP
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MQ
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InbreedingCoeff
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SIO_000300: -3.9e-3

ReadPosRankSum
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SIO_000300: 4.06e-1

BaseQRankSum
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SIO_000300: -6.19e-1

VQSLOD
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SIO_000300: 3.01e0

FS
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SIO_000300: 5.35e-1

ClippingRankSum
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SIO_000300: -2.39e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.86469754605803e-5
allele num: 53628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 9.340000000000001e-1

BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -3.4e-3

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.86219739292365e-5
allele num: 53700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 4.313e0

ReadPosRankSum
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SIO_000300: -2.7e-2

MQ
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SIO_000300: 6.0e1

MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -1.516e0

VQSLOD
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SIO_000300: -1.28e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 3
allele frequency: 8.356545961002785e-4
allele num: 3590
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.11731843575419e-4
allele num: 53700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
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SIO_000300: 8.859999999999999e0

FS
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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SIO_000300: -1.28e-1

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53558
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.888503755054881e-4
allele num: 6924
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
type: Population
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.867692652497105e-5
allele num: 53542
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.616505036132849e-5
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2449
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.750375037503751e-5
allele num: 53328
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 1.092189e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.314e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6856
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.580645161290323e-4
allele num: 7750
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52988
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
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SIO_000300: 1.4e0

ClippingRankSum
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SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.070286e6

QD
type: SiteQuality
SIO_000300: 1.134e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52948
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 12784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.297e0

FS
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SIO_000300: 0.0e0

DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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SIO_000300: 4.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.812137846904544e-5
allele num: 52464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.287995878413189e-4
allele num: 7764
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.891414141414142e-5
allele num: 12672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 1.441e0

DP
type: SiteQuality
SIO_000300: 1.059505e6

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52564
num of homozygotes: 0

Latino
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allele frequency: 1.279099513942185e-4
allele num: 7818
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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FS
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MQ
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele num: 12646
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.488095238095238e-4
allele num: 6720
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.934984520123839e-5
allele num: 51680
num of homozygotes: 0

African
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European (Finnish)
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Other
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12520
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.868322308614754e-5
allele num: 51702
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 9.54945e5

InbreedingCoeff
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SIO_000300: -5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

QD
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SIO_000300: 7.3e0

FS
type: SiteQuality
SIO_000300: 1.3866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.946282600233554e-5
allele num: 51380
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.8e-3

DP
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
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SIO_000300: -2.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.175e0

MQ
type: SiteQuality
SIO_000300: 5.345e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.950230127155004e-5
allele num: 51276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.357e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.581e0

DP
type: SiteQuality
SIO_000300: 9.28543e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.986649713922441e-5
allele num: 50336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.418e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

DP
type: SiteQuality
SIO_000300: 8.99581e5

QD
type: SiteQuality
SIO_000300: 2.057e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.986491855383393e-5
allele num: 50340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.226e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.919e0

VQSLOD
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DP
type: SiteQuality
SIO_000300: 8.9867e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ClippingRankSum
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SIO_000300: -1.129e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.61398e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.290000000000001e-2

VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 574
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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SIO_000300: 7.31e-1

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 3.759398496240602e-4
allele num: 2660
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 5.90876861262113e-4
allele num: 8462
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 5.192107995846313e-4
allele num: 7704
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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DP
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SIO_000300: 3.9083e5

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.37444e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.652e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.652e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 8.02e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
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allele count: 2
allele frequency: 7.194244604316547e-4
allele num: 2780
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
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FS
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InbreedingCoeff
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SIO_000300: -5.79e-2

BaseQRankSum
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SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.45245e5

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.262626262626263e-4
allele num: 7920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
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SIO_000300: -1.817e0

DP
type: SiteQuality
SIO_000300: 4.82975e5

VQSLOD
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QD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
SIO_000300: 1.534e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -1.411e0

FS
type: SiteQuality
SIO_000300: 7.659e0

DP
type: SiteQuality
SIO_000300: 5.05717e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.323140033563304e-5
allele num: 10726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 5.32336e5

QD
type: SiteQuality
SIO_000300: 1.509e1

BaseQRankSum
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SIO_000300: -1.3e0

ReadPosRankSum
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SIO_000300: 7.2e-1

ClippingRankSum
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SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.127e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13360
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 234
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East Asian
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 1
allele frequency: 2.831257078142696e-4
allele num: 3532
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 234
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 9.711094925952901e-4
allele num: 8238
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
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BaseQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.48502994011976e-5
allele num: 13360
num of homozygotes: 0

Other
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South Asian
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allele frequency: 4.855547462976451e-4
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East Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10812
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.292156609381057e-4
allele num: 15478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.624671916010499e-4
allele num: 3810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

DP
type: SiteQuality
SIO_000300: 6.29e5

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

GenotypeQuality
all individuals: 8437
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 547
bin: 2.5e0
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GenotypeQuality
all individuals: 1484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1202
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 3.093293739173472e-4
allele num: 16164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 2.301e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.37839e5

QD
type: SiteQuality
SIO_000300: 9.85e0

GenotypeQuality
all individuals: 33209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11573
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.916420845624386e-4
allele num: 2034
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.32124e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.255e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.98e0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.75e1
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GenotypeQuality
all individuals: 1200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 544
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.548112404200965e-5
allele num: 28184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.90479e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 3.004e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 701
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
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GenotypeQuality
all individuals: 674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.373363918499528e-5
allele num: 29644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.481e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 8.08153e5

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
all individuals: 2418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 2109
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 681
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 1401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.312574532926991e-5
allele num: 30188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

QD
type: SiteQuality
SIO_000300: 6.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.187e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.14261e5

GenotypeQuality
all individuals: 952
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
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GenotypeQuality
all individuals: 380
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GenotypeQuality
all individuals: 459
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 3.25e1
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GenotypeQuality
all individuals: 523
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variant carriers: 2

GenotypeQuality
all individuals: 682
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.75e1
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GenotypeQuality
all individuals: 16156
bin: 6.25e1
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 103
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variant carriers: 1

GenotypeQuality
all individuals: 1419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.290802105915144e-5
allele num: 32290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.011e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.291e0

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.439e0

DP
type: SiteQuality
SIO_000300: 8.40759e5

GenotypeQuality
all individuals: 816
bin: 9.75e1
variant carriers: 300

GenotypeQuality
all individuals: 783
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1710
bin: 6.75e1
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GenotypeQuality
all individuals: 392
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variant carriers: 3

GenotypeQuality
all individuals: 1456
bin: 3.75e1
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GenotypeQuality
all individuals: 26758
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 278
bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 108
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variant carriers: 4

GenotypeQuality
all individuals: 1416
bin: 7.5e0
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GenotypeQuality
all individuals: 391
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 701
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19012
bin: 6.25e1
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GenotypeQuality
all individuals: 367
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 4
allele frequency: 8.547008547008548e-3
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 93
allele frequency: 8.980301274623407e-3
allele num: 10356
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 2.163565556036348e-4
allele num: 4622
num of homozygotes: 0

Latino
type: Population
allele count: 43
allele frequency: 9.857863365428703e-3
allele num: 4362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.883239171374765e-3
allele num: 2124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 151
allele frequency: 4.122079056562568e-3
allele num: 36632
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 9.794319294809011e-4
allele num: 6126
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 9.06664e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

GenotypeQuality
all individuals: 521
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 19946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26021
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.574565416285453e-4
allele num: 2186
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.117746717492588e-4
allele num: 4722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.971091508130513e-5
allele num: 37636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.128e1

DP
type: SiteQuality
SIO_000300: 9.16662e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.074e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 1.532e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.37e-1

GenotypeQuality
all individuals: 1022
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24380
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 7
allele frequency: 1.368791552600704e-3
allele num: 5114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

FS
type: SiteQuality
SIO_000300: 4.167e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.042e0

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

DP
type: SiteQuality
SIO_000300: 9.56036e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.440691203748902e-5
allele num: 40972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.042e0

DP
type: SiteQuality
SIO_000300: 9.56036e5

FS
type: SiteQuality
SIO_000300: 4.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 683
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1919
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43642
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.800504141159525e-4
allele num: 11108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.165e1

MQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

DP
type: SiteQuality
SIO_000300: 9.96785e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.573e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

GenotypeQuality
all individuals: 537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 541
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11818
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.281916639317361e-4
allele num: 6094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 3.487e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.068013e6

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
all individuals: 18529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.250975292587776e-4
allele num: 6152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.074987e6

QD
type: SiteQuality
SIO_000300: 1.077e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.635e0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

FS
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

GenotypeQuality
all individuals: 17102
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 2273
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 482
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1174
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 551
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 549
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 846
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 30261
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 383
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1428
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1311
bin: 9.75e1
variant carriers: 805

European (Finnish)
type: Population
allele count: 128
allele frequency: 3.81633870005963e-2
allele num: 3354
num of homozygotes: 1

African
type: Population
allele count: 5
allele frequency: 6.525711302531976e-4
allele num: 7662
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 2.811244979919679e-3
allele num: 7470
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 670
allele frequency: 1.340858149215498e-2
allele num: 49968
num of homozygotes: 2

Other
type: Population
allele count: 6
allele frequency: 9.49367088607595e-3
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 9.127115831397279e-4
allele num: 12052
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.588310038119441e-4
allele num: 6296
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.106998e6

GenotypeQuality
all individuals: 1060
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.563966218329684e-4
allele num: 6394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.969356808066485e-5
allele num: 50778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12194
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 8.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.394e1

DP
type: SiteQuality
SIO_000300: 1.111676e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
all individuals: 1363
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3432
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.284356537374775e-4
allele num: 7786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.986e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.064e0

DP
type: SiteQuality
SIO_000300: 1.11708e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 32577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.274534794799898e-4
allele num: 7846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.267105930055753e-4
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.077e0

QD
type: SiteQuality
SIO_000300: 8.33e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 1.126426e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.5e0
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GenotypeQuality
all individuals: 1080
bin: 2.75e1
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GenotypeQuality
all individuals: 14640
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.629785317519892e-5
allele num: 53288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 8.605851979345956e-4
allele num: 12782
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3710
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.162769e6

QD
type: SiteQuality
SIO_000300: 1.417e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14334
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variant carriers: 0

GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 35625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
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variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12836
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.240081088908196e-4
allele num: 6906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 1.168404e6

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 739
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GenotypeQuality
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GenotypeQuality
all individuals: 2642
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GenotypeQuality
all individuals: 574
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GenotypeQuality
all individuals: 519
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variant carriers: 4

GenotypeQuality
all individuals: 925
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GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0