X-153296565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296565
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296565
    reference: chr 0
allele count: 6
allele frequency: 6.862711457296778e-5
allele num: 87429
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*86G>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.714G>A
  hgvsp: ENST00000303391.6:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.750G>A
  hgvsp: ENST00000453960.2:c.750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly250Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-153296570-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296570
    reference: chr 0
allele count: 1
allele frequency: 1.14356288452302e-5
allele num: 87446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.709G>T
  hgvsp: ENSP00000301948.6:p.Gly237Cys
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*81G>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.745G>T
  hgvsp: ENSP00000395535.2:p.Gly249Cys
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 85
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  variant carriers: 0
hgvs: p.Gly249Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-153296570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296570
    reference: chr 0
allele count: 2
allele frequency: 2.28712576904604e-5
allele num: 87446
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.745G>A
  hgvsp: ENSP00000395535.2:p.Gly249Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*81G>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.709G>A
  hgvsp: ENSP00000301948.6:p.Gly237Ser
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1835
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  variant carriers: 0
hgvs: p.Gly249Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-153296571-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296571
    reference: chr 0
allele count: 1
allele frequency: 1.143392904103637e-5
allele num: 87459
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*80G>C
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.708G>C
  hgvsp: ENST00000303391.6:c.708G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.744G>C
  hgvsp: ENST00000453960.2:c.744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9017
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  variant carriers: 0
hgvs: p.Gly248Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-153296578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296578
    reference: chr 0
allele count: 10
allele frequency: 1.142896327874098e-4
allele num: 87497
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*73C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.737C>G
  hgvsp: ENSP00000395535.2:p.Ala246Gly
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.701C>G
  hgvsp: ENSP00000301948.6:p.Ala234Gly
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7442
  bin: 9.75e1
  variant carriers: 10
hgvs: p.Ala246Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153296584-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296584
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296584
    reference: chr 0
allele count: 17
allele frequency: 1.942280008226127e-4
allele num: 87526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.695G>C
  hgvsp: ENSP00000301948.6:p.Gly232Ala
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*67G>C
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.731G>C
  hgvsp: ENSP00000395535.2:p.Gly244Ala
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7453
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly244Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-153296589-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296589
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296589
    reference: chr 0
allele count: 1
allele frequency: 1.142100093652208e-5
allele num: 87558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*62A>C
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.726A>C
  hgvsp: ENST00000453960.2:c.726A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.690A>C
  hgvsp: ENST00000303391.6:c.690A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15283
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro242Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-153296592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296592
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296592
    reference: chr 0
allele count: 1
allele frequency: 1.141721945037505e-5
allele num: 87587
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.687G>A
  hgvsp: ENST00000303391.6:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.723G>A
  hgvsp: ENST00000453960.2:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*59G>A
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
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genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser241Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-153296593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296593
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296593
    reference: chr 0
allele count: 13
allele frequency: 1.484052147309299e-4
allele num: 87598
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.722C>T
  hgvsp: ENSP00000395535.2:p.Ser241Leu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.686C>T
  hgvsp: ENSP00000301948.6:p.Ser229Leu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
hgvs: p.Ser241Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

X-153296596-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296596
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296596
    reference: chr 0
allele count: 90
allele frequency: 1.026986934444001e-3
allele num: 87635
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.683C>G
  hgvsp: ENSP00000301948.6:p.Thr228Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.719C>G
  hgvsp: ENSP00000395535.2:p.Thr240Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*55C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4373
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  variant carriers: 0
hgvs: p.Thr240Ser
num of homozygotes: 2
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-153296598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296598
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296598
    reference: chr 0
allele count: 4
allele frequency: 4.564178048585676e-5
allele num: 87639
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.681A>C
  hgvsp: ENSP00000301948.6:p.Gln227His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.717A>C
  hgvsp: ENSP00000395535.2:p.Gln239His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*53A>C
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1714
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  variant carriers: 0
hgvs: p.Gln239His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

X-153296598-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296598
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296598
    reference: chr 0
allele count: 1
allele frequency: 1.141044512146419e-5
allele num: 87639
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*53A>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.681A>T
  hgvsp: ENSP00000301948.6:p.Gln227His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.717A>T
  hgvsp: ENSP00000395535.2:p.Gln239His
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28546
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln239His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

X-153296598-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296598
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296598
    reference: chr 0
allele count: 1
allele frequency: 1.141044512146419e-5
allele num: 87639
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.717A>G
  hgvsp: ENST00000453960.2:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.681A>G
  hgvsp: ENST00000303391.6:c.681A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*53A>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln239Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

X-153296606-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296606
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296606
    reference: chr 0
allele count: 1
allele frequency: 1.140641040264629e-5
allele num: 87670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.673C>G
  hgvsp: ENSP00000301948.6:p.Pro225Ala
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.709C>G
  hgvsp: ENSP00000395535.2:p.Pro237Ala
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28623
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro237Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

X-153296613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296613
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296613
    reference: chr 0
allele count: 1
allele frequency: 1.140224852340882e-5
allele num: 87702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.666C>T
  hgvsp: ENST00000303391.6:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.702C>T
  hgvsp: ENST00000453960.2:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15398
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9051
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val234Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

X-153296613-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296613
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296613
    reference: chr 0
allele count: 2
allele frequency: 2.280449704681763e-5
allele num: 87702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.666C>G
  hgvsp: ENST00000303391.6:c.666C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*38C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.702C>G
  hgvsp: ENST00000453960.2:c.702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9488
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val234Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-153296618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296618
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296618
    reference: chr 0
allele count: 1
allele frequency: 1.140055862737274e-5
allele num: 87715
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.661C>T
  hgvsp: ENSP00000301948.6:p.Leu221Phe
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.697C>T
  hgvsp: ENSP00000395535.2:p.Leu233Phe
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4281
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  variant carriers: 0
hgvs: p.Leu233Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

X-153296619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296619
    reference: chr 0
allele count: 7
allele frequency: 7.980300059282229e-5
allele num: 87716
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.696C>T
  hgvsp: ENST00000453960.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.660C>T
  hgvsp: ENST00000303391.6:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu232Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-153296619-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296619
    reference: chr 0
allele count: 3
allele frequency: 3.420128596835241e-5
allele num: 87716
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.696C>G
  hgvsp: ENST00000453960.2:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.660C>G
  hgvsp: ENST00000303391.6:c.660C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*32C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu232Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-153296633-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296633
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296633
    reference: chr 0
allele count: 1
allele frequency: 1.139886923217217e-5
allele num: 87728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*18A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.682A>G
  hgvsp: ENSP00000395535.2:p.Ser228Gly
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.646A>G
  hgvsp: ENSP00000301948.6:p.Ser216Gly
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7504
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  variant carriers: 1
hgvs: p.Ser228Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

X-153296642-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296642
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296642
    reference: chr 0
allele count: 1
allele frequency: 1.139886923217217e-5
allele num: 87728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*9C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.637C>G
  hgvsp: ENSP00000301948.6:p.Leu213Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.673C>G
  hgvsp: ENSP00000395535.2:p.Leu225Val
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu225Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-153296646-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296646
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296646
    reference: chr 0
allele count: 8
allele frequency: 9.119407238529495e-5
allele num: 87725
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.633G>C
  hgvsp: ENSP00000301948.6:p.Arg211Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.*5G>C
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.669G>C
  hgvsp: ENSP00000395535.2:p.Arg223Ser
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg223Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-153296651-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296651
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296651
    reference: chr 0
allele count: 1
allele frequency: 1.139951894030072e-5
allele num: 87723
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.664A>G
  hgvsp: ENSP00000395535.2:p.Lys222Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.628A>G
  hgvsp: ENSP00000301948.6:p.Lys210Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.519A>G
  hgvsp: ENSP00000384865.1:p.Ter173TrpextTer38
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ter173TrpextTer38
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-153296660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296660
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296660
    reference: chr 0
allele count: 1
allele frequency: 1.140042865611747e-5
allele num: 87716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.510G>A
  hgvsp: ENST00000407218.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.619G>A
  hgvsp: ENSP00000301948.6:p.Val207Met
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.655G>A
  hgvsp: ENSP00000395535.2:p.Val219Met
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15445
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val219Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-153296665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296665
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296665
    reference: chr 0
allele count: 1
allele frequency: 1.140120852810398e-5
allele num: 87710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.614A>G
  hgvsp: ENSP00000301948.6:p.Glu205Gly
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.505A>G
  hgvsp: ENSP00000384865.1:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.650A>G
  hgvsp: ENSP00000395535.2:p.Glu217Gly
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28588
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  variant carriers: 0
hgvs: p.Glu217Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

X-153296666-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296666
    reference: chr 0
allele count: 1
allele frequency: 1.140146850914398e-5
allele num: 87708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.504G>C
  hgvsp: ENSP00000384865.1:p.Gln168His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.649G>C
  hgvsp: ENSP00000395535.2:p.Glu217Gln
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.613G>C
  hgvsp: ENSP00000301948.6:p.Glu205Gln
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31
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  variant carriers: 0
hgvs: p.Glu217Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-153296669-A-ACGTGGCCGCCTTGGGTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296687
    reference: chr 0
allele count: 2
allele frequency: 2.280267703428383e-5
allele num: 87709
alternate allele: ACGTGGCCGCCTTGGGTCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsp: ENSP00000301948.6:p.Arg198_Thr203dup
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsp: ENSP00000384865.1:p.Asp162_Arg167dup
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsp: ENSP00000395535.2:p.Arg210_Thr215dup
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 316
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg210_Thr215dup
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-153296670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296670
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296670
    reference: chr 0
allele count: 7
allele frequency: 7.981027956400784e-5
allele num: 87708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.500G>A
  hgvsp: ENSP00000384865.1:p.Arg167His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.645G>A
  hgvsp: ENST00000453960.2:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.609G>A
  hgvsp: ENST00000303391.6:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
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  variant carriers: 0
hgvs: p.Arg167His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153296671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296671
    reference: chr 0
allele count: 57
allele frequency: 6.498911147342858e-4
allele num: 87707
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.499C>T
  hgvsp: ENSP00000384865.1:p.Arg167Cys
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.644C>T
  hgvsp: ENSP00000395535.2:p.Thr215Met
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.608C>T
  hgvsp: ENSP00000301948.6:p.Thr203Met
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7554
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  variant carriers: 56
hgvs: p.Thr215Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

X-153296673-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296673
    reference: chr 0
allele count: 2
allele frequency: 2.280371700587196e-5
allele num: 87705
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.497C>T
  hgvsp: ENSP00000384865.1:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.606C>T
  hgvsp: ENST00000303391.6:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.642C>T
  hgvsp: ENST00000453960.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro166Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-153296674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296674
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296674
    reference: chr 0
allele count: 4
allele frequency: 4.560743401174391e-5
allele num: 87705
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.496C>T
  hgvsp: ENSP00000384865.1:p.Pro166Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.605C>T
  hgvsp: ENSP00000301948.6:p.Ala202Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.641C>T
  hgvsp: ENSP00000395535.2:p.Ala214Val
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala214Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153296676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296676
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296676
    reference: chr 0
allele count: 3
allele frequency: 3.420635554085949e-5
allele num: 87703
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.603G>A
  hgvsp: ENST00000303391.6:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.639G>A
  hgvsp: ENST00000453960.2:c.639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.494G>A
  hgvsp: ENSP00000384865.1:p.Arg165Gln
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg165Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-153296677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296677
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296677
    reference: chr 0
allele count: 135
allele frequency: 1.539356207026306e-3
allele num: 87699
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.602C>T
  hgvsp: ENSP00000301948.6:p.Ala201Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.638C>T
  hgvsp: ENSP00000395535.2:p.Ala213Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.493C>T
  hgvsp: ENSP00000384865.1:p.Arg165Trp
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala213Val
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
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site quality: FS

X-153296682-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296682
    reference: chr 0
allele count: 1
allele frequency: 1.140406897180914e-5
allele num: 87688
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.633C>G
  hgvsp: ENST00000453960.2:c.633C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.597C>G
  hgvsp: ENST00000303391.6:c.597C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
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  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.488C>G
  hgvsp: ENSP00000384865.1:p.Pro163Arg
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro163Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
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site quality: DP

X-153296683-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296683
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296683
    reference: chr 0
allele count: 1
allele frequency: 1.140458920669678e-5
allele num: 87684
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
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  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.632C>G
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  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.487C>G
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  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
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  hgvsc: ENST00000303391.6:c.596C>G
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  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.Pro211Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
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site quality: MQ
site quality: DP
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X-153296683-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296683
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296683
    reference: chr 0
allele count: 10
allele frequency: 1.140458920669677e-4
allele num: 87684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000384865
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  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.487C>A
  hgvsp: ENSP00000384865.1:p.Pro163Thr
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
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  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.632C>A
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  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
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  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
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  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.596C>A
  hgvsp: ENSP00000301948.6:p.Pro199His
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
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hgvs: p.Pro211His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
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site quality: ClippingRankSum
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site quality: QD
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X-153296684-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296684
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296684
    reference: chr 0
allele count: 1
allele frequency: 1.140445914352512e-5
allele num: 87685
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.595C>A
  hgvsp: ENSP00000301948.6:p.Pro199Thr
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
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  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.486C>A
  hgvsp: ENSP00000384865.1:p.Asp162Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/6990
canonical: true
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro211Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

X-153296687-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296687
    reference: chr 0
allele count: 1
allele frequency: 1.140497941401216e-5
allele num: 87681
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.483A>C
  hgvsp: ENST00000407218.1:c.483A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.592A>C
  hgvsp: ENST00000303391.6:c.592A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.628A>C
  hgvsp: ENST00000453960.2:c.628A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg210Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-153296688-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296688
    reference: chr 0
allele count: 1
allele frequency: 1.140536964803029e-5
allele num: 87678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.591G>C
  hgvsp: ENST00000303391.6:c.591G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.482G>C
  hgvsp: ENSP00000384865.1:p.Arg161Pro
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.627G>C
  hgvsp: ENST00000453960.2:c.627G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg161Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153296689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296689
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296689
    reference: chr 0
allele count: 48
allele frequency: 5.474702313061728e-4
allele num: 87676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.590C>T
  hgvsp: ENSP00000301948.6:p.Thr197Met
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.626C>T
  hgvsp: ENSP00000395535.2:p.Thr209Met
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.481C>T
  hgvsp: ENSP00000384865.1:p.Arg161Ter
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg161Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-153296692-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296692
    reference: chr 0
allele count: 36
allele frequency: 4.106167235066668e-4
allele num: 87673
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.623C>G
  hgvsp: ENSP00000395535.2:p.Thr208Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.478C>G
  hgvsp: ENSP00000384865.1:p.Pro160Ala
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.587C>G
  hgvsp: ENSP00000301948.6:p.Thr196Ser
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15300
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr208Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-153296692-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296692
    reference: chr 0
allele count: 1
allele frequency: 1.140602009740741e-5
allele num: 87673
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.587C>A
  hgvsp: ENSP00000301948.6:p.Thr196Asn
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.623C>A
  hgvsp: ENSP00000395535.2:p.Thr208Asn
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.478C>A
  hgvsp: ENSP00000384865.1:p.Pro160Thr
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr208Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
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site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-153296694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296694
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296694
    reference: chr 0
allele count: 20
allele frequency: 2.281386170237036e-4
allele num: 87666
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.621C>T
  hgvsp: ENST00000453960.2:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.476C>T
  hgvsp: ENSP00000384865.1:p.Ala159Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
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  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.585C>T
  hgvsp: ENST00000303391.6:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala159Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
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site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
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site quality: FS
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X-153296696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296696
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296696
    reference: chr 0
allele count: 4
allele frequency: 4.563292872136533e-5
allele num: 87656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.583G>A
  hgvsp: ENSP00000301948.6:p.Gly195Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.474G>A
  hgvsp: ENST00000407218.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
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  hgvsp: ENSP00000395535.2:p.Gly207Ser
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.Gly207Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
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site quality: InbreedingCoeff
site quality: MQRankSum
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site quality: MQ

X-153296697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296697
    reference: chr 0
allele count: 193
allele frequency: 2.202040024644593e-3
allele num: 87646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.618C>T
  hgvsp: ENST00000453960.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.582C>T
  hgvsp: ENST00000303391.6:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
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  ensembl protein: ENSP00000384865
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  gene symbol: MECP2
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  hgvsp: ENSP00000384865.1:p.Ala158Val
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7827
  bin: 9.75e1
  variant carriers: 188
hgvs: p.Ala158Val
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153296706-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296706
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296706
    reference: chr 0
allele count: 2
allele frequency: 2.282115064241539e-5
allele num: 87638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.573C>G
  hgvsp: ENST00000303391.6:c.573C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.609C>G
  hgvsp: ENST00000453960.2:c.609C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.464C>G
  hgvsp: ENSP00000384865.1:p.Pro155Arg
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4352
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hgvs: p.Pro155Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-153296709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296709
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296709
    reference: chr 0
allele count: 1
allele frequency: 1.141239842965398e-5
allele num: 87624
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.606C>T
  hgvsp: ENST00000453960.2:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.570C>T
  hgvsp: ENST00000303391.6:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
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  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.461C>T
  hgvsp: ENSP00000384865.1:p.Ala154Val
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala154Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

X-153296711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296711
    reference: chr 0
allele count: 1
allele frequency: 1.141383128074601e-5
allele num: 87613
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.459C>T
  hgvsp: ENST00000407218.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.604C>T
  hgvsp: ENSP00000395535.2:p.Arg202Cys
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.568C>T
  hgvsp: ENSP00000301948.6:p.Arg190Cys
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg202Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-153296717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296717
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296717
    reference: chr 0
allele count: 1
allele frequency: 1.14148735802751e-5
allele num: 87605
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.453C>T
  hgvsp: ENST00000407218.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.598C>T
  hgvsp: ENSP00000395535.2:p.Arg200Trp
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.562C>T
  hgvsp: ENSP00000301948.6:p.Arg188Trp
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7783
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg200Trp
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

X-153296724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296724
    reference: chr 0
allele count: 2
allele frequency: 2.283313544615947e-5
allele num: 87592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.555C>T
  hgvsp: ENST00000303391.6:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.446C>T
  hgvsp: ENSP00000384865.1:p.Ala149Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.591C>T
  hgvsp: ENST00000453960.2:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.871C>T
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 168
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  variant carriers: 0
hgvs: p.Ala149Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

X-153296724-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296724
    reference: chr 0
allele count: 1
allele frequency: 1.141656772307973e-5
allele num: 87592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.446C>A
  hgvsp: ENSP00000384865.1:p.Ala149Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.591C>A
  hgvsp: ENST00000453960.2:c.591C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.871C>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.555C>A
  hgvsp: ENST00000303391.6:c.555C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 79
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hgvs: p.Ala149Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-153296728-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296728
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296728
    reference: chr 0
allele count: 3
allele frequency: 3.424657534246575e-5
allele num: 87600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.551C>G
  hgvsp: ENSP00000301948.6:p.Thr184Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.442C>G
  hgvsp: ENSP00000384865.1:p.Leu148Val
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.587C>G
  hgvsp: ENSP00000395535.2:p.Thr196Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.867C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr196Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
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X-153296742-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296742
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296742
    reference: chr 0
allele count: 1
allele frequency: 1.141578574853307e-5
allele num: 87598
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.573C>G
  hgvsp: ENST00000453960.2:c.573C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-5C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.537C>G
  hgvsp: ENST00000303391.6:c.537C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.853C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
hgvs: c.433-5C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-153296743-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296743
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296743
    reference: chr 0
allele count: 1
allele frequency: 1.141422212076247e-5
allele num: 87610
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.572C>G
  hgvsp: ENSP00000395535.2:p.Pro191Arg
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.536C>G
  hgvsp: ENSP00000301948.6:p.Pro179Arg
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-6C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.852C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4361
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  variant carriers: 0
hgvs: p.Pro191Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-153296746-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296746
    reference: chr 0
allele count: 2
allele frequency: 2.282740201337686e-5
allele num: 87614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.849C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.533C>G
  hgvsp: ENSP00000301948.6:p.Ser178Cys
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.569C>G
  hgvsp: ENSP00000395535.2:p.Ser190Cys
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-9C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser190Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153296750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296750
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296750
    reference: chr 0
allele count: 1
allele frequency: 1.141370100668843e-5
allele num: 87614
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.565A>G
  hgvsp: ENSP00000395535.2:p.Lys189Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.529A>G
  hgvsp: ENSP00000301948.6:p.Lys177Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.845A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-13A>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys189Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

X-153296751-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296751
    reference: chr 0
allele count: 5
allele frequency: 5.706589970097469e-5
allele num: 87618
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.564C>G
  hgvsp: ENST00000453960.2:c.564C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.528C>G
  hgvsp: ENST00000303391.6:c.528C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.844C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-14C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro188Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-153296752-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296752
    reference: chr 0
allele count: 7
allele frequency: 7.989773090444231e-5
allele num: 87612
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-15C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.563C>G
  hgvsp: ENSP00000395535.2:p.Pro188Arg
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.527C>G
  hgvsp: ENSP00000301948.6:p.Pro176Arg
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.843C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15263
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro188Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-153296752-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296752
    reference: chr 0
allele count: 5
allele frequency: 5.706980778888737e-5
allele num: 87612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-15C>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.563C>A
  hgvsp: ENSP00000395535.2:p.Pro188His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.527C>A
  hgvsp: ENSP00000301948.6:p.Pro176His
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.843C>A
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1833
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  variant carriers: 0
hgvs: p.Pro188His
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-153296753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296753
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296753
    reference: chr 0
allele count: 1
allele frequency: 1.141331020235799e-5
allele num: 87617
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.842C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-16C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.562C>T
  hgvsp: ENSP00000395535.2:p.Pro188Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.526C>T
  hgvsp: ENSP00000301948.6:p.Pro176Ser
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro188Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

X-153296758-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296758
    reference: chr 0
allele count: 1
allele frequency: 1.141317994019494e-5
allele num: 87618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-21A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.837A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.521A>G
  hgvsp: ENSP00000301948.6:p.Lys174Arg
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.557A>G
  hgvsp: ENSP00000395535.2:p.Lys186Arg
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
hgvs: p.Lys186Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-153296759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296759
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296759
    reference: chr 0
allele count: 1
allele frequency: 1.141278917154563e-5
allele num: 87621
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-22A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.836A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.556A>G
  hgvsp: ENSP00000395535.2:p.Lys186Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.520A>G
  hgvsp: ENSP00000301948.6:p.Lys174Glu
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys186Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

X-153296762-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296762
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296762
    reference: chr 0
allele count: 1
allele frequency: 1.141265892127548e-5
allele num: 87622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.833C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.517C>G
  hgvsp: ENSP00000301948.6:p.Pro173Ala
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.553C>G
  hgvsp: ENSP00000395535.2:p.Pro185Ala
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-25C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 798
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro185Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-153296764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296764
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296764
    reference: chr 0
allele count: 3
allele frequency: 3.423914904301579e-5
allele num: 87619
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.831C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.515C>T
  hgvsp: ENSP00000301948.6:p.Pro172Leu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.551C>T
  hgvsp: ENSP00000395535.2:p.Pro184Leu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-27C>T
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro184Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-153296766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296766
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296766
    reference: chr 0
allele count: 1
allele frequency: 1.141174725262185e-5
allele num: 87629
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-29A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.829A>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.513A>G
  hgvsp: ENST00000303391.6:c.513A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.549A>G
  hgvsp: ENST00000453960.2:c.549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys183Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-153296768-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296768
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296768
    reference: chr 0
allele count: 1
allele frequency: 1.141187748208335e-5
allele num: 87628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.827A>C
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.547A>C
  hgvsp: ENSP00000395535.2:p.Lys183Gln
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-31A>C
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.511A>C
  hgvsp: ENSP00000301948.6:p.Lys171Gln
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Lys183Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-153296784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296784
    reference: chr 0
allele count: 4
allele frequency: 4.562512119172817e-5
allele num: 87671
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.531C>T
  hgvsp: ENST00000453960.2:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.495C>T
  hgvsp: ENST00000303391.6:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-47C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.811C>T
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro177Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

X-153296784-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296784
    reference: chr 0
allele count: 2
allele frequency: 2.281256059586408e-5
allele num: 87671
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.811C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.495C>G
  hgvsp: ENST00000303391.6:c.495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.531C>G
  hgvsp: ENST00000453960.2:c.531C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.433-47C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro177Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-153296800-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296800
    reference: chr 0
allele count: 2
allele frequency: 2.28057972336568e-5
allele num: 87697
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.479C>G
  hgvsp: ENSP00000301948.6:p.Thr160Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.515C>G
  hgvsp: ENSP00000395535.2:p.Thr172Ser
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.432+47C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.795C>G
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4368
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr172Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

X-153296831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296831
    reference: chr 0
allele count: 3
allele frequency: 3.420128596835241e-5
allele num: 87716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*671C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.764C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.484C>T
  hgvsp: ENST00000453960.2:c.484C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.432+16C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.448C>T
  hgvsp: ENST00000303391.6:c.448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
  all individuals: 60
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genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 17897
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
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genotype depth: GenotypeDepth
  all individuals: 164
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
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genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
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genotype depth: GenotypeDepth
  all individuals: 15517
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genotype depth: GenotypeDepth
  all individuals: 182
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
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genotype depth: GenotypeDepth
  all individuals: 90
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4364
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7819
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 50
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9012
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu162Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153296832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296832
    reference: chr 0
allele count: 1
allele frequency: 1.140042865611747e-5
allele num: 87716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.763C>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*670C>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.432+15C>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.447C>A
  hgvsp: ENST00000303391.6:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.483C>A
  hgvsp: ENST00000453960.2:c.483C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
  all individuals: 28129
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 47
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser161Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-153296838-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296838
    reference: chr 0
allele count: 1
allele frequency: 1.140029868782562e-5
allele num: 87717
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.432+9C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.757C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.477C>G
  hgvsp: ENSP00000395535.2:p.Asp159Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*664C>G
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.441C>G
  hgvsp: ENSP00000301948.6:p.Asp147Glu
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1173
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38
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genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp159Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-153296853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296853
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296853
    reference: chr 0
allele count: 37
allele frequency: 4.218350966800438e-4
allele num: 87712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*649C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.462C>T
  hgvsp: ENST00000453960.2:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.426C>T
  hgvsp: ENST00000407218.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.742C>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.426C>T
  hgvsp: ENST00000303391.6:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9514
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genotype depth: GenotypeDepth
  all individuals: 1834
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genotype depth: GenotypeDepth
  all individuals: 61
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
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genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
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genotype depth: GenotypeDepth
  all individuals: 15542
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7847
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe154Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS

X-153296859-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296859
    reference: chr 0
allele count: 1
allele frequency: 1.140237853616264e-5
allele num: 87701
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*643G>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.420G>T
  hgvsp: ENST00000407218.1:c.420G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.736G>T
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.456G>T
  hgvsp: ENST00000453960.2:c.456G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.420G>T
  hgvsp: ENST00000303391.6:c.420G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala152Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-153296859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296859
    reference: chr 0
allele count: 1
allele frequency: 1.140237853616264e-5
allele num: 87701
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.420G>A
  hgvsp: ENST00000407218.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.736G>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.420G>A
  hgvsp: ENST00000303391.6:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*643G>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.456G>A
  hgvsp: ENST00000453960.2:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala152Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

X-153296860-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153296860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153296860
    reference: chr 0
allele count: 1
allele frequency: 1.140198850679558e-5
allele num: 87704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000301948
  ensembl transcript: ENST00000303391
  gene symbol: MECP2
  hgvsc: ENST00000303391.6:c.419C>A
  hgvsp: ENSP00000301948.6:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000395535
  ensembl transcript: ENST00000453960
  gene symbol: MECP2
  hgvsc: ENST00000453960.2:c.455C>A
  hgvsp: ENSP00000395535.2:p.Ala152Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000384865
  ensembl transcript: ENST00000407218
  gene symbol: MECP2
  hgvsc: ENST00000407218.1:c.419C>A
  hgvsp: ENSP00000384865.1:p.Ala140Glu
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169057
  ensembl transcript: ENST00000486506
  gene symbol: MECP2
  hgvsc: ENST00000486506.1:n.735C>A
  variant of: http://identifiers.org/hgnc/6990
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169057
  ensembl protein: ENSP00000358973
  ensembl transcript: ENST00000369957
  gene symbol: MECP2
  hgvsc: ENST00000369957.3:c.*642C>A
  variant of: http://identifiers.org/hgnc/6990
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala152Glu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.190334483990001e-4
allele num: 8401
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.046243984097091e-4
allele num: 47790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.139e0

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
SIO_000300: 2.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.542e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.463e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.922644e6

GenotypeQuality
all individuals: 7430
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8403
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091918917222768e-5
allele num: 47803
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.469e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.923769e6

QD
type: SiteQuality
SIO_000300: 2.001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

GenotypeQuality
all individuals: 7430
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8403
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.183837834445537e-5
allele num: 47803
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.923769e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.469e0

QD
type: SiteQuality
SIO_000300: 2.001e1

GenotypeQuality
all individuals: 1720
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091306439132526e-5
allele num: 47817
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
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Other
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FS
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 2.090475792290325e-4
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Other
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MQ
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FS
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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African
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Latino
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South Asian
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East Asian
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Other
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num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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MQ
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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African
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Latino
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.927445e6

GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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Latino
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allele frequency: 1.072731173567904e-4
allele num: 9322
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European (Finnish)
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allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 1.181753722524226e-4
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European (Non-Finnish)
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allele count: 10
allele frequency: 2.088031403992316e-4
allele num: 47892
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Other
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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Latino
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allele frequency: 5.36365586783952e-4
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African
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allele frequency: 9.78542796510257e-3
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South Asian
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European (Non-Finnish)
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allele num: 47907
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ClippingRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8484
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 4.520795660036166e-4
allele num: 6636
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Latino
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South Asian
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European (Non-Finnish)
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Other
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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QD
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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allele frequency: 2.087290488217245e-5
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South Asian
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East Asian
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European (Finnish)
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Other
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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QD
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Other
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East Asian
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QD
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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Latino
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African
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South Asian
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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GenotypeQuality
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East Asian
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Latino
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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South Asian
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ClippingRankSum
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ReadPosRankSum
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DP
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FS
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MQ
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
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QD
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BaseQRankSum
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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South Asian
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African
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East Asian
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allele frequency: 1.054534498342874e-3
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European (Finnish)
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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Other
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African
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East Asian
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European (Non-Finnish)
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num of homozygotes: 0

MQ
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FS
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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South Asian
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FS
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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SIO_000300: 3.05e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele frequency: 1.506477854775535e-4
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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Other
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South Asian
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 633
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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MQ
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BaseQRankSum
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DP
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MQRankSum
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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African
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Other
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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DP
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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Latino
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East Asian
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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InbreedingCoeff
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QD
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VQSLOD
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DP
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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South Asian
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African
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European (Non-Finnish)
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Latino
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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QD
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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Other
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Latino
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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African
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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VQSLOD
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QD
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DP
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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QD
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SIO_000300: 2.565e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

FS
type: SiteQuality
SIO_000300: 4.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.396e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.935198e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.171098458779119e-5
allele num: 47949
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 2.542e0

VQSLOD
type: SiteQuality
SIO_000300: 7.83e0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

DP
type: SiteQuality
SIO_000300: 1.935055e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.585e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

QD
type: SiteQuality
SIO_000300: 2.325e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 7
allele frequency: 7.507507507507507e-4
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 5.925925925925926e-4
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 8.342196917558239e-4
allele num: 47949
num of homozygotes: 0

African
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allele count: 11
allele frequency: 1.293813220418725e-3
allele num: 8502
num of homozygotes: 0

East Asian
type: Population
allele count: 70
allele frequency: 1.054852320675105e-2
allele num: 6636
num of homozygotes: 1

European (Finnish)
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allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.478e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.631e1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

DP
type: SiteQuality
SIO_000300: 1.958745e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47940
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East Asian
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allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8498
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.364e0

FS
type: SiteQuality
SIO_000300: 9.318e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.444e0

DP
type: SiteQuality
SIO_000300: 1.937713e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.526e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.93846e6

FS
type: SiteQuality
SIO_000300: 2.505e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.608e0

QD
type: SiteQuality
SIO_000300: 2.496e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 9.876543209876543e-4
allele num: 10125
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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DP
type: SiteQuality
SIO_000300: 1.93846e6

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.608e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

QD
type: SiteQuality
SIO_000300: 2.496e1

VQSLOD
type: SiteQuality
SIO_000300: 2.526e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47937
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.799e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.81e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

QD
type: SiteQuality
SIO_000300: 1.891e1

FS
type: SiteQuality
SIO_000300: 4.361e0

DP
type: SiteQuality
SIO_000300: 1.937483e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086245384182088e-5
allele num: 47933
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 1.937257e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.086375964948884e-5
allele num: 47930
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.937168e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.52e-2

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.618e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.519433564326605e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 4.172926055750292e-4
allele num: 47928
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.530242409978819e-4
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num of homozygotes: 0

South Asian
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allele count: 15
allele frequency: 1.481481481481481e-3
allele num: 10125
num of homozygotes: 0

Latino
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allele count: 7
allele frequency: 7.507507507507507e-4
allele num: 9324
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.575e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.912e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 36

European (Non-Finnish)
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allele count: 30
allele frequency: 6.259650294203564e-4
allele num: 47926
num of homozygotes: 0

European (Finnish)
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allele count: 5
allele frequency: 1.103752759381898e-3
allele num: 4530
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.1768859597505e-4
allele num: 8497
num of homozygotes: 0

Other
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086550098067855e-5
allele num: 47926
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.669e-1

DP
type: SiteQuality
SIO_000300: 1.942911e6

QD
type: SiteQuality
SIO_000300: 2.057e1

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47922
num of homozygotes: 0

African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 20
allele frequency: 1.975308641975309e-3
allele num: 10125
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 8.347768015526848e-5
allele num: 47917
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.991e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.579778830963665e-3
allele num: 633
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Latino
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allele count: 29
allele frequency: 3.11025311025311e-3
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 2.37037037037037e-3
allele num: 10125
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.622516556291391e-4
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 127
allele frequency: 2.650803590064705e-3
allele num: 47910
num of homozygotes: 0

African
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allele count: 8
allele frequency: 9.427292010370022e-4
allele num: 8486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.963553e6

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.049e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e1

QD
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SIO_000300: 1.797e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8480
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.174493842621582e-5
allele num: 47910
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.941663e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0875083500334e-5
allele num: 47904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 7.355e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.975e0

DP
type: SiteQuality
SIO_000300: 1.941271e6

QD
type: SiteQuality
SIO_000300: 2.562e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087682672233821e-5
allele num: 47900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.623e0

FS
type: SiteQuality
SIO_000300: 4.415e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.634e1

MQ
type: SiteQuality
SIO_000300: 5.813e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.177e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.941419e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.582278481012658e-3
allele num: 632
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47895
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.940781e6

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.103e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 3.472e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088380252276334e-5
allele num: 47884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.182172833668282e-4
allele num: 8459
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VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.940963e6

QD
type: SiteQuality
SIO_000300: 1.446e1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 7784
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8459
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 1.222e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.154e0

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.63e-1

DP
type: SiteQuality
SIO_000300: 1.940963e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3100
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 7786
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8461
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.176237210273544e-5
allele num: 47890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.145e-1

FS
type: SiteQuality
SIO_000300: 2.55e0

DP
type: SiteQuality
SIO_000300: 1.941084e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

QD
type: SiteQuality
SIO_000300: 2.331e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088075003654131e-5
allele num: 47891
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.59e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9324
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African
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.087813432991628e-5
allele num: 47897
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.941919e6

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.986e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.26e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 29
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087726257333138e-5
allele num: 47899
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0333e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08776984425237e-5
allele num: 47898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
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allele num: 10125
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8992
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.043819544477151e-4
allele num: 47901
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.080000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.603e1

DP
type: SiteQuality
SIO_000300: 1.943268e6

GenotypeQuality
all individuals: 4273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.175714047102054e-5
allele num: 47896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.532389273877674e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.622e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.81e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.944211e6

QD
type: SiteQuality
SIO_000300: 1.631e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

GenotypeQuality
all individuals: 1712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8992
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.043928511775514e-4
allele num: 47896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

DP
type: SiteQuality
SIO_000300: 1.944211e6

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.631e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.81e-2

FS
type: SiteQuality
SIO_000300: 2.622e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.114e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 1711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087682672233821e-5
allele num: 47900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 4.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

DP
type: SiteQuality
SIO_000300: 1.943759e6

VQSLOD
type: SiteQuality
SIO_000300: -2.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

GenotypeQuality
all individuals: 8992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47903
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8672e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.654e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

VQSLOD
type: SiteQuality
SIO_000300: -3.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.306e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.943888e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087464774031938e-5
allele num: 47905
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.943941e6

QD
type: SiteQuality
SIO_000300: 2.839e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8467
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087334056942473e-5
allele num: 47908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 2.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 2.656e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.944644e6

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 4267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.262132882459766e-5
allele num: 47907
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.945172e6

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

FS
type: SiteQuality
SIO_000300: 1.786e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.99e-1

QD
type: SiteQuality
SIO_000300: 1.749e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087159792953749e-5
allele num: 47912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.41e-2

QD
type: SiteQuality
SIO_000300: 1.993e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 8.204000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.168e0

DP
type: SiteQuality
SIO_000300: 1.945152e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087116231502932e-5
allele num: 47913
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e0

QD
type: SiteQuality
SIO_000300: 1.424e1

FS
type: SiteQuality
SIO_000300: 5.06e0

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.74e-1

DP
type: SiteQuality
SIO_000300: 1.945245e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.343937086714366e-5
allele num: 47939
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.278e0

VQSLOD
type: SiteQuality
SIO_000300: -2.86e-1

DP
type: SiteQuality
SIO_000300: 1.947556e6

QD
type: SiteQuality
SIO_000300: 1.676e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.996e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085984271678592e-5
allele num: 47939
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.278e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: -2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.996e0

QD
type: SiteQuality
SIO_000300: 1.676e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.170315692897953e-5
allele num: 47958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 1.081e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

QD
type: SiteQuality
SIO_000300: 1.448e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 1.948152e6

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4285
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.252865896869398e-5
allele num: 47978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.948954e6

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 2.718e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 1.2677e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.162e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
all individuals: 7819
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08420175072947e-5
allele num: 47980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.124e0

DP
type: SiteQuality
SIO_000300: 1.94917e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.451e1

VQSLOD
type: SiteQuality
SIO_000300: -9.643e-1

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7820
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28127
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.877518767285657e-5
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.452e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.949071e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.57e-2

GenotypeQuality
all individuals: 9037
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4289
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.072616110693983e-4
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.168490381208445e-4
allele num: 47979
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17799505242078e-4
allele num: 8489
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.029544769369913e-4
allele num: 6634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.415011037527594e-4
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 8.889766890557092e-4
allele num: 10124
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.951584e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.776e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

QD
type: SiteQuality
SIO_000300: 1.749e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7836
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.149e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.889e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 1.258e1

FS
type: SiteQuality
SIO_000300: 8.452999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.72e-1

DP
type: SiteQuality
SIO_000300: 1.950913e6

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9032
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.950913e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.149e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 1.258e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 8.452999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0