17-73732735-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732735
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732735
    reference: chr 17
allele count: 3
allele frequency: 4.596574020163638e-5
allele num: 65266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1950A>G
  hgvsp: ENST00000579662.1:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.727A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1950A>G
  hgvsp: ENST00000339591.3:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1950A>G
  hgvsp: ENST00000450894.3:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1950A>G
  hgvsp: ENST00000449880.2:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1950A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7277A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1950A>G
  hgvsp: ENST00000200181.3:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2015A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu650Glu
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-73732741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732741
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732741
    reference: chr 17
allele count: 1
allele frequency: 1.541544627716972e-5
allele num: 64870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7283C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2021C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1956C>T
  hgvsp: ENST00000339591.3:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1956C>T
  hgvsp: ENST00000449880.2:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1956C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1956C>T
  hgvsp: ENST00000579662.1:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1956C>T
  hgvsp: ENST00000200181.3:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.733C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1956C>T
  hgvsp: ENST00000450894.3:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn652Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

17-73732753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732753
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732753
    reference: chr 17
allele count: 1
allele frequency: 1.562451173400831e-5
allele num: 64002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2033G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1968G>A
  hgvsp: ENST00000339591.3:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1968G>A
  hgvsp: ENST00000449880.2:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1968G>A
  hgvsp: ENST00000579662.1:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1968G>A
  hgvsp: ENST00000200181.3:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1968G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1968G>A
  hgvsp: ENST00000450894.3:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.745G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7295G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys656Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-73732756-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732756
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732756
    reference: chr 17
allele count: 1
allele frequency: 1.565729316715726e-5
allele num: 63868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2036G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1971G>C
  hgvsp: ENSP00000400217.2:p.Met657Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1971G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7298G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.748G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1971G>C
  hgvsp: ENSP00000463651.1:p.Met657Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1971G>C
  hgvsp: ENSP00000200181.3:p.Met657Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1971G>C
  hgvsp: ENSP00000405536.3:p.Met657Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1971G>C
  hgvsp: ENSP00000344079.3:p.Met657Ile
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10567
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met657Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-73732757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732757
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732757
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 63906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1972G>A
  hgvsp: ENSP00000463651.1:p.Val658Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1972G>A
  hgvsp: ENSP00000200181.3:p.Val658Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1972G>A
  hgvsp: ENSP00000405536.3:p.Val658Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.749G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1972G>A
  hgvsp: ENSP00000344079.3:p.Val658Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1972G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7299G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1972G>A
  hgvsp: ENSP00000400217.2:p.Val658Met
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2037G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21770
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10789
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Val658Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-73732762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732762
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732762
    reference: chr 17
allele count: 6
allele frequency: 9.489166534872688e-5
allele num: 63230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7304C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1977C>T
  hgvsp: ENST00000200181.3:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1977C>T
  hgvsp: ENST00000449880.2:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1977C>T
  hgvsp: ENST00000339591.3:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1977C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2042C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1977C>T
  hgvsp: ENST00000579662.1:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1977C>T
  hgvsp: ENST00000450894.3:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.754C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7031
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp659Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

17-73732763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732763
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732763
    reference: chr 17
allele count: 3
allele frequency: 4.76462740613684e-5
allele num: 62964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1978G>A
  hgvsp: ENSP00000405536.3:p.Glu660Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1978G>A
  hgvsp: ENSP00000200181.3:p.Glu660Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1978G>A
  hgvsp: ENSP00000344079.3:p.Glu660Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1978G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2043G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.755G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7305G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1978G>A
  hgvsp: ENSP00000400217.2:p.Glu660Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1978G>A
  hgvsp: ENSP00000463651.1:p.Glu660Lys
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21234
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu660Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

17-73732775-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732775
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732775
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 61776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990G>T
  hgvsp: ENSP00000463651.1:p.Ala664Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990G>T
  hgvsp: ENSP00000344079.3:p.Ala664Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990G>T
  hgvsp: ENSP00000405536.3:p.Ala664Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990G>T
  hgvsp: ENSP00000200181.3:p.Ala664Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990G>T
  hgvsp: ENSP00000400217.2:p.Ala664Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7317G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala664Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

17-73732776-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732776
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732776
    reference: chr 17
allele count: 1
allele frequency: 1.617180930202471e-5
allele num: 61836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7318G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+1G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+1G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8635
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1990+1G>T
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-73732777-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732777
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732776
    reference: chr 17
allele count: 1
allele frequency: 1.622112639501687e-5
allele num: 61648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7320delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+3delA
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+3delA
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1990+3delA
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-73732787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732787
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732787
    reference: chr 17
allele count: 1
allele frequency: 1.663118680149015e-5
allele num: 60128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7329G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+12G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+12G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19927
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-73732807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732807
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732807
    reference: chr 17
allele count: 3
allele frequency: 5.421229534858506e-5
allele num: 55338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+32G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7349G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/17-73732810-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732810
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732810
    reference: chr 17
allele count: 42773
allele frequency: 7.319631733862687e-1
allele num: 58436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7352A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+35A>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+35A>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.25e1
  variant carriers: 892
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 1.75e1
  variant carriers: 5079
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 2.5e0
  variant carriers: 4161
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 791
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 794
genotype depth: GenotypeDepth
  all individuals: 19705
  bin: 7.5e0
  variant carriers: 15870
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 2.75e1
  variant carriers: 1222
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 2234
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 703
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.25e1
  variant carriers: 716
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 1.25e1
  variant carriers: 10898
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.75e1
  variant carriers: 976
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 776
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.25e1
  variant carriers: 765
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.75e1
  variant carriers: 701
genotype quality: GenotypeQuality
  all individuals: 16026
  bin: 9.75e1
  variant carriers: 15826
genotype quality: GenotypeQuality
  all individuals: 5090
  bin: 1.75e1
  variant carriers: 4866
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 8.75e1
  variant carriers: 755
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 1068
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 2.75e1
  variant carriers: 2253
num of homozygotes: 15502
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-73732810-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732810
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732810
    reference: chr 17
allele count: 2
allele frequency: 3.422547744541036e-5
allele num: 58436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+35A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7352A>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+35A>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

17-73732811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732811
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732811
    reference: chr 17
allele count: 2
allele frequency: 4.515692029803567e-5
allele num: 44290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7353G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+36G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+36G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

17-73732815-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732815
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732815
    reference: chr 17
allele count: 1
allele frequency: 2.323744016359158e-5
allele num: 43034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7357A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+40A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+40A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17965
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-73732821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732821
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732821
    reference: chr 17
allele count: 2
allele frequency: 4.962040391008783e-5
allele num: 40306
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7363C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+46C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17734
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73732822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732822
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732822
    reference: chr 17
allele count: 1
allele frequency: 2.491652962575373e-5
allele num: 40134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7364G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+47G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+47G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20066
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-73732826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732826
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732826
    reference: chr 17
allele count: 1
allele frequency: 2.626188350228478e-5
allele num: 38078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7368A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+51A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+51A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-73732832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732832
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732832
    reference: chr 17
allele count: 6
allele frequency: 1.684257803727824e-4
allele num: 35624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7374C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+57C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+57C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20945
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18589
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5918
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-73732833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73732833
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73732833
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 35170
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1990+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7375G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1990+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1990+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.767+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1990+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1990+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2055+58G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1990+58G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18777
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

17-73733357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733357
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733357
    reference: chr 17
allele count: 1
allele frequency: 2.519653295706511e-5
allele num: 39688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-46C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7899C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26912
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-73733358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733358
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733358
    reference: chr 17
allele count: 98
allele frequency: 2.471377414636607e-3
allele num: 39654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7900G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-45G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-45G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26941
  bin: 7.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4954
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-73733368-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733368
    reference: chr 17
allele count: 2
allele frequency: 5.187798298402158e-5
allele num: 38552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7910G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-35G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-35G>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22527
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-73733368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733368
    reference: chr 17
allele count: 28
allele frequency: 7.262917617763021e-4
allele num: 38552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7910G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-35G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-35G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27172
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 9.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

17-73733376-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733376
    reference: chr 17
allele count: 452
allele frequency: 1.324736225087925e-2
allele num: 34120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7918T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-27T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-27T>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27987
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 21449
  bin: 2.25e1
  variant carriers: 8
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-73733378-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733378
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733378
    reference: chr 17
allele count: 6
allele frequency: 1.572656741455232e-4
allele num: 38152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7920C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-25C>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-25C>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28477
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

17-73733394-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733394
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733394
    reference: chr 17
allele count: 2
allele frequency: 5.100219309430306e-5
allele num: 39214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7936T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-9T>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-9T>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

17-73733396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733396
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733396
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 39304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7938G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.768-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1991-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2056-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1991-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1991-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1991-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1991-7G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1991-7G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30015
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1991-7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-73733405-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733405
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733405
    reference: chr 17
allele count: 4
allele frequency: 9.972078181092939e-5
allele num: 40112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1993G>A
  hgvsp: ENSP00000344079.3:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1993G>A
  hgvsp: ENSP00000463651.1:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.770G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7947G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1993G>A
  hgvsp: ENSP00000200181.3:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1993G>A
  hgvsp: ENSP00000405536.3:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1993G>A
  hgvsp: ENSP00000400217.2:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1993G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2058G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu665Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-73733408-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733408
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733408
    reference: chr 17
allele count: 1
allele frequency: 2.465483234714004e-5
allele num: 40560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.1996G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.773G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.1996G>C
  hgvsp: ENSP00000405536.3:p.Glu666Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.1996G>C
  hgvsp: ENSP00000463651.1:p.Glu666Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.1996G>C
  hgvsp: ENSP00000200181.3:p.Glu666Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.1996G>C
  hgvsp: ENSP00000400217.2:p.Glu666Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7950G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.1996G>C
  hgvsp: ENSP00000344079.3:p.Glu666Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2061G>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32532
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu666Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

17-73733420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733420
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733420
    reference: chr 17
allele count: 1
allele frequency: 2.444987775061125e-5
allele num: 40900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2008C>T
  hgvsp: ENSP00000200181.3:p.Arg670Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2008C>T
  hgvsp: ENSP00000463651.1:p.Arg670Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2008C>T
  hgvsp: ENSP00000344079.3:p.Arg670Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.785C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2008C>T
  hgvsp: ENSP00000400217.2:p.Arg670Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2073C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2008C>T
  hgvsp: ENSP00000405536.3:p.Arg670Cys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2008C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7962C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg670Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-73733421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733421
    reference: chr 17
allele count: 146
allele frequency: 3.565846033606878e-3
allele num: 40944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7963G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2009G>A
  hgvsp: ENSP00000200181.3:p.Arg670His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2009G>A
  hgvsp: ENSP00000405536.3:p.Arg670His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2009G>A
  hgvsp: ENSP00000344079.3:p.Arg670His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.786G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2009G>A
  hgvsp: ENSP00000400217.2:p.Arg670His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2009G>A
  hgvsp: ENSP00000463651.1:p.Arg670His
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2009G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2074G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 1.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7782
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31580
  bin: 7.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33481
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 2
hgvs: p.Arg670His
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-73733421-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733421
    reference: chr 17
allele count: 3
allele frequency: 7.327080890973036e-5
allele num: 40944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2009G>T
  hgvsp: ENSP00000405536.3:p.Arg670Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2074G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2009G>T
  hgvsp: ENSP00000463651.1:p.Arg670Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2009G>T
  hgvsp: ENSP00000344079.3:p.Arg670Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2009G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2009G>T
  hgvsp: ENSP00000400217.2:p.Arg670Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2009G>T
  hgvsp: ENSP00000200181.3:p.Arg670Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.786G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7963G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31580
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Arg670Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-73733433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733433
    reference: chr 17
allele count: 3
allele frequency: 7.477567298105683e-5
allele num: 40120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2021G>A
  hgvsp: ENSP00000344079.3:p.Arg674Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2021G>A
  hgvsp: ENSP00000463651.1:p.Arg674Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.798G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2021G>A
  hgvsp: ENSP00000405536.3:p.Arg674Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2021G>A
  hgvsp: ENSP00000400217.2:p.Arg674Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7975G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2021G>A
  hgvsp: ENSP00000200181.3:p.Arg674Gln
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2021G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2086G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31120
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg674Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-73733433-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733433
    reference: chr 17
allele count: 1
allele frequency: 2.492522432701894e-5
allele num: 40120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2086G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2021G>T
  hgvsp: ENSP00000400217.2:p.Arg674Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7975G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2021G>T
  hgvsp: ENSP00000200181.3:p.Arg674Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2021G>T
  hgvsp: ENSP00000405536.3:p.Arg674Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2021G>T
  hgvsp: ENSP00000344079.3:p.Arg674Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.798G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2021G>T
  hgvsp: ENSP00000463651.1:p.Arg674Leu
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2021G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31120
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5513
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8689
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg674Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-73733437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733437
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733437
    reference: chr 17
allele count: 8
allele frequency: 2.033967253127225e-4
allele num: 39332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2025C>T
  hgvsp: ENST00000339591.3:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2025C>T
  hgvsp: ENST00000449880.2:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2025C>T
  hgvsp: ENST00000450894.3:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7979C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2090C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.802C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2025C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2025C>T
  hgvsp: ENST00000200181.3:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2025C>T
  hgvsp: ENST00000579662.1:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30518
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32179
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp675Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-73733438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733438
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733438
    reference: chr 17
allele count: 1
allele frequency: 2.541037759821111e-5
allele num: 39354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2026G>A
  hgvsp: ENSP00000405536.3:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2026G>A
  hgvsp: ENSP00000344079.3:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2026G>A
  hgvsp: ENSP00000200181.3:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.803G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2091G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2026G>A
  hgvsp: ENSP00000400217.2:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2026G>A
  hgvsp: ENSP00000463651.1:p.Glu676Lys
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7980G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2026G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu676Lys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-73733446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733446
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733446
    reference: chr 17
allele count: 4
allele frequency: 1.049317943336831e-4
allele num: 38120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2034C>T
  hgvsp: ENST00000579662.1:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2034C>T
  hgvsp: ENST00000450894.3:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2034C>T
  hgvsp: ENST00000200181.3:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2034C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2034C>T
  hgvsp: ENST00000339591.3:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2099C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7988C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.811C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2034C>T
  hgvsp: ENST00000449880.2:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29649
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp678Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

17-73733452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733452
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733452
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 36814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2040C>T
  hgvsp: ENST00000579662.1:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2105C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2040C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2040C>T
  hgvsp: ENST00000339591.3:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2040C>T
  hgvsp: ENST00000200181.3:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2040C>T
  hgvsp: ENST00000449880.2:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.817C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2040C>T
  hgvsp: ENST00000450894.3:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7994C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28393
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys680Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-73733454-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733454
    reference: chr 17
allele count: 1
allele frequency: 2.758012024932429e-5
allele num: 36258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2042C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.819C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2042C>A
  hgvsp: ENSP00000344079.3:p.Thr681Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2107C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2042C>A
  hgvsp: ENSP00000400217.2:p.Thr681Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2042C>A
  hgvsp: ENSP00000463651.1:p.Thr681Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2042C>A
  hgvsp: ENSP00000200181.3:p.Thr681Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2042C>A
  hgvsp: ENSP00000405536.3:p.Thr681Asn
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+7996C>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr681Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

17-73733468-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733468
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733468
    reference: chr 17
allele count: 1
allele frequency: 3.106168851338759e-5
allele num: 32194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8010A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2056A>G
  hgvsp: ENSP00000200181.3:p.Met686Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2056A>G
  hgvsp: ENSP00000344079.3:p.Met686Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2056A>G
  hgvsp: ENSP00000405536.3:p.Met686Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2056A>G
  hgvsp: ENSP00000463651.1:p.Met686Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.833A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2056A>G
  hgvsp: ENSP00000400217.2:p.Met686Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2056A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2121A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20679
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met686Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-73733480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733480
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 25400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2068G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2068G>A
  hgvsp: ENSP00000400217.2:p.Gly690Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2068G>A
  hgvsp: ENSP00000200181.3:p.Gly690Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2068G>A
  hgvsp: ENSP00000463651.1:p.Gly690Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2068G>A
  hgvsp: ENSP00000405536.3:p.Gly690Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2068G>A
  hgvsp: ENSP00000344079.3:p.Gly690Ser
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.845G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8022G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2133G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26864
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18539
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly690Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-73733481-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733481
    reference: chr 17
allele count: 1
allele frequency: 3.932054105064485e-5
allele num: 25432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2069G>T
  hgvsp: ENSP00000463651.1:p.Gly690Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2069G>T
  hgvsp: ENSP00000344079.3:p.Gly690Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2069G>T
  hgvsp: ENSP00000200181.3:p.Gly690Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.846G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2069G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2134G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2069G>T
  hgvsp: ENSP00000405536.3:p.Gly690Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2069G>T
  hgvsp: ENSP00000400217.2:p.Gly690Val
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8023G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly690Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

17-73733482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733482
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733482
    reference: chr 17
allele count: 4
allele frequency: 1.578531965272297e-4
allele num: 25340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2070C>T
  hgvsp: ENST00000339591.3:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2070C>T
  hgvsp: ENST00000450894.3:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2070C>T
  hgvsp: ENST00000449880.2:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.847C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8024C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2070C>T
  hgvsp: ENST00000200181.3:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2070C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2135C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2070C>T
  hgvsp: ENST00000579662.1:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27105
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18511
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13591
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly690Gly
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-73733483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733483
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733483
    reference: chr 17
allele count: 1
allele frequency: 4.019292604501608e-5
allele num: 24880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2071G>A
  hgvsp: ENSP00000400217.2:p.Ala691Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8025G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.848G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2071G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2071G>A
  hgvsp: ENSP00000200181.3:p.Ala691Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2071G>A
  hgvsp: ENSP00000405536.3:p.Ala691Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2071G>A
  hgvsp: ENSP00000463651.1:p.Ala691Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2071G>A
  hgvsp: ENSP00000344079.3:p.Ala691Thr
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2136G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Ala691Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

17-73733490-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733490
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733490
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 24092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2078G>C
  hgvsp: ENSP00000405536.3:p.Gly693Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2078G>C
  hgvsp: ENSP00000400217.2:p.Gly693Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2143G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.855G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8032G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2078G>C
  hgvsp: ENSP00000344079.3:p.Gly693Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2078G>C
  hgvsp: ENSP00000200181.3:p.Gly693Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2078G>C
  hgvsp: ENSP00000463651.1:p.Gly693Ala
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2078G>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16371
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly693Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

17-73733502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733502
    reference: chr 17
allele count: 1
allele frequency: 4.378283712784589e-5
allele num: 22840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2155C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2090C>T
  hgvsp: ENSP00000405536.3:p.Thr697Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2090C>T
  hgvsp: ENSP00000400217.2:p.Thr697Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2090C>T
  hgvsp: ENSP00000200181.3:p.Thr697Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2090C>T
  hgvsp: ENSP00000344079.3:p.Thr697Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2090C>T
  hgvsp: ENSP00000463651.1:p.Thr697Ile
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.867C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8044C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2090C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr697Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73733505-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733505
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733505
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2093T>A
  hgvsp: ENSP00000405536.3:p.Val698Asp
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2093T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2093T>A
  hgvsp: ENSP00000200181.3:p.Val698Asp
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2158T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2093T>A
  hgvsp: ENSP00000400217.2:p.Val698Asp
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2093T>A
  hgvsp: ENSP00000344079.3:p.Val698Asp
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2093T>A
  hgvsp: ENSP00000463651.1:p.Val698Asp
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.870T>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8047T>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12982
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val698Asp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-73733520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733520
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733520
    reference: chr 17
allele count: 13
allele frequency: 5.911240451073117e-4
allele num: 21992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2108A>G
  hgvsp: ENSP00000405536.3:p.Lys703Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2108A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8062A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2108A>G
  hgvsp: ENSP00000344079.3:p.Lys703Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2108A>G
  hgvsp: ENSP00000400217.2:p.Lys703Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2108A>G
  hgvsp: ENSP00000200181.3:p.Lys703Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2108A>G
  hgvsp: ENSP00000463651.1:p.Lys703Arg
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2173A>G
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.885A>G
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33830
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10529
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys703Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-73733535-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733535
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733533
    reference: chr 17
allele count: 6
allele frequency: 2.793296089385475e-4
allele num: 21480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+13_890+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+13_2113+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8080_265+8081delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+13_2113+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+13_2113+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+13_2178+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+13_2113+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+13_2113+14delGG
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+13_2113+14delGG
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34008
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30852
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: TGG
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-73733540-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733540
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733540
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+15C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8082C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+15C>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-73733541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733541
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733541
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8083C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+16C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+16C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33972
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4864
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-73733542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733542
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733542
    reference: chr 17
allele count: 1
allele frequency: 4.682524817381532e-5
allele num: 21356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+17G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8084G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-73733545-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733545
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733545
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8087C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+20C>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+20C>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-73733545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733545
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733545
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8087C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+20C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-73733546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733546
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733546
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8088G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+21G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+21G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4573
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

17-73733554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733554
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733554
    reference: chr 17
allele count: 1
allele frequency: 4.688232536333802e-5
allele num: 21330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8096G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+29G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+29G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34334
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-73733558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733558
    reference: chr 17
allele count: 2
allele frequency: 9.351912466099317e-5
allele num: 21386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+33C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8100C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

17-73733559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733559
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733559
    reference: chr 17
allele count: 1
allele frequency: 4.677268475210477e-5
allele num: 21380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2113+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2113+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2113+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2113+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2178+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2113+34G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8101G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2113+34G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

17-73733560-T-TGTGGCCAGAGCTCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733560
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733574
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21386
alternate allele: TGTGGCCAGAGCTCG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34224
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-73733574-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733574
    reference: chr 17
allele count: 1
allele frequency: 4.650730164635848e-5
allele num: 21502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+49G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-45G>C
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8116G>C
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-73733574-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733574
    reference: chr 17
allele count: 45
allele frequency: 2.092828574086132e-3
allele num: 21502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-45G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8116G>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+49G>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33335
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11580
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

17-73733582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733582
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733582
    reference: chr 17
allele count: 1
allele frequency: 4.604475550234829e-5
allele num: 21718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-37G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-37G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+57G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-37G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8124G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-37G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-37G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-37G>A
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-37G>A
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-73733591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733591
    reference: chr 17
allele count: 1
allele frequency: 4.47427293064877e-5
allele num: 22350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-28C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-28C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+66C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-28C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8133C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-28C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-28C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-28C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-28C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15820
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-73733592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733592
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733592
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-27C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-27C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-27C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-27C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-27C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+67C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8134C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-27C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-27C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16168
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

17-73733595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733595
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733595
    reference: chr 17
allele count: 1
allele frequency: 4.395990856339019e-5
allele num: 22748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+70C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-24C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8137C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-24C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-73733599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733599
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733599
    reference: chr 17
allele count: 13
allele frequency: 5.592841163310962e-4
allele num: 23244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8141C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+74C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-20C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-20C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 27722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18904
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-73733599-CCCTGCCTCCTCCTCTCCAGACTGCCCTCCGGGCTCCTTCTGGTGGCTCATCCCCCTGCTCCTCCTCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733599
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733531
    reference: chr 17
allele count: 1
allele frequency: 4.302185510239202e-5
allele num: 23244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 27722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: CCCTGCCTCCTCCTCTCCAGACTGCCCTCCGGGCTCCTTCTGGTGGCTCATCCCCCTGCTCCTCCTCCT
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

17-73733600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73733600
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73733600
    reference: chr 17
allele count: 3
allele frequency: 1.287332646755922e-4
allele num: 23304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000580542
  gene symbol: ITGB4
  hgvsc: ENST00000580542.1:n.2179-19C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000200181
  ensembl transcript: ENST00000200181
  gene symbol: ITGB4
  hgvsc: ENST00000200181.3:c.2114-19C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463651
  ensembl transcript: ENST00000579662
  gene symbol: ITGB4
  hgvsc: ENST00000579662.1:c.2114-19C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584374
  gene symbol: ITGB4
  hgvsc: ENST00000584374.1:n.890+75C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl transcript: ENST00000584558
  gene symbol: ITGB4
  hgvsc: ENST00000584558.1:n.2114-19C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000405536
  ensembl transcript: ENST00000450894
  gene symbol: ITGB4
  hgvsc: ENST00000450894.3:c.2114-19C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000463788
  ensembl transcript: ENST00000582629
  gene symbol: ITGB4
  hgvsc: ENST00000582629.1:c.265+8142C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000344079
  ensembl transcript: ENST00000339591
  gene symbol: ITGB4
  hgvsc: ENST00000339591.3:c.2114-19C>T
  variant of: http://identifiers.org/hgnc/6158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132470
  ensembl protein: ENSP00000400217
  ensembl transcript: ENST00000449880
  gene symbol: ITGB4
  hgvsc: ENST00000449880.2:c.2114-19C>T
  variant of: http://identifiers.org/hgnc/6158
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5131
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1043
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4974
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 4.63821892393321e-4
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10666
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 1.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

QD
type: SiteQuality
SIO_000300: 1.144e1

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 1.045493e6

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 645
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25061
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2490
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.402030838661151e-5
allele num: 10636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.040658e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.073e0

QD
type: SiteQuality
SIO_000300: 1.747e1

GenotypeQuality
all individuals: 571
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.674368848951647e-5
allele num: 37392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.99e0

FS
type: SiteQuality
SIO_000300: 1.853e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 1.023259e6

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.681684097613301e-5
allele num: 37290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.023273e6

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.655e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.761e0

QD
type: SiteQuality
SIO_000300: 6.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.659e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

GenotypeQuality
all individuals: 288
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.022337e6

QD
type: SiteQuality
SIO_000300: 6.81e0

VQSLOD
type: SiteQuality
SIO_000300: -1.596e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10066
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.628752918182312e-4
allele num: 36838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.011754e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 24006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7299
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5132
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.173941474579042e-5
allele num: 36702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.005109e6

QD
type: SiteQuality
SIO_000300: 1.009e1

FS
type: SiteQuality
SIO_000300: 5.551e0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 320
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8633
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 7537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.874e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.75462e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.538e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

QD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.75264e5

QD
type: SiteQuality
SIO_000300: 8.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.883e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

GenotypeQuality
all individuals: 1903
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7722
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.784429470401515e-5
allele num: 35914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.75158e5

MQ
type: SiteQuality
SIO_000300: 6.077e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 3.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
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variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.858939905083195e-5
allele num: 34978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.198e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

DP
type: SiteQuality
SIO_000300: 9.46903e5

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 1.072e1

GenotypeQuality
all individuals: 235
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10576
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 928
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.455966714997163e-5
allele num: 31726
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 1.578e1

DP
type: SiteQuality
SIO_000300: 9.05223e5

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 3.378e0

GenotypeQuality
all individuals: 2508
bin: 1.25e1
variant carriers: 2262

GenotypeQuality
all individuals: 542
bin: 7.25e1
variant carriers: 477

GenotypeQuality
all individuals: 2488
bin: 3.75e1
variant carriers: 2403

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 750

GenotypeQuality
all individuals: 3724
bin: 7.5e0
variant carriers: 1938

GenotypeQuality
all individuals: 4544
bin: 2.5e0
variant carriers: 151

GenotypeQuality
all individuals: 1295
bin: 5.25e1
variant carriers: 1282

GenotypeQuality
all individuals: 5849
bin: 2.25e1
variant carriers: 4523

GenotypeQuality
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bin: 3.25e1
variant carriers: 3244

GenotypeQuality
all individuals: 820
bin: 8.25e1
variant carriers: 762

GenotypeQuality
all individuals: 1573
bin: 4.75e1
variant carriers: 1553

GenotypeQuality
all individuals: 1596
bin: 6.25e1
variant carriers: 1156

GenotypeQuality
all individuals: 982
bin: 6.75e1
variant carriers: 845

GenotypeQuality
all individuals: 939
bin: 5.75e1
variant carriers: 916

European (Finnish)
type: Population
allele count: 1214
allele frequency: 7.822164948453608e-1
allele num: 1552
num of homozygotes: 469

Other
type: Population
allele count: 292
allele frequency: 7.411167512690355e-1
allele num: 394
num of homozygotes: 108

East Asian
type: Population
allele count: 2543
allele frequency: 5.616166077738516e-1
allele num: 4528
num of homozygotes: 699

South Asian
type: Population
allele count: 6560
allele frequency: 6.396255850234009e-1
allele num: 10256
num of homozygotes: 2073

Latino
type: Population
allele count: 1235
allele frequency: 6.83075221238938e-1
allele num: 1808
num of homozygotes: 381

African
type: Population
allele count: 4503
allele frequency: 7.492512479201331e-1
allele num: 6010
num of homozygotes: 1675

European (Non-Finnish)
type: Population
allele count: 26426
allele frequency: 7.79804060434372e-1
allele num: 33888
num of homozygotes: 10097

VQSLOD
type: SiteQuality
SIO_000300: 6.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

DP
type: SiteQuality
SIO_000300: 1.032181e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 2.44e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.622e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4544
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5090
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5849
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variant carriers: 0

GenotypeQuality
all individuals: 939
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variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
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GenotypeQuality
all individuals: 16026
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3724
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GenotypeQuality
all individuals: 982
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
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variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.901794145420208e-5
allele num: 33888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 1.032181e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.622e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

QD
type: SiteQuality
SIO_000300: 2.44e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.63e0

GenotypeQuality
all individuals: 17163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 781
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GenotypeQuality
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GenotypeQuality
all individuals: 172
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variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 614
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variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.992825827022718e-4
allele num: 5018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.235493434985176e-5
allele num: 23610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.47e1

DP
type: SiteQuality
SIO_000300: 7.33311e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

FS
type: SiteQuality
SIO_000300: 1.396e0

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2086
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
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GenotypeQuality
all individuals: 17383
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variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 6.25e1
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GenotypeQuality
all individuals: 553
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GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.25e1
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GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
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GenotypeQuality
all individuals: 2554
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.061345786457228e-4
allele num: 9422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22768
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.601e-1

DP
type: SiteQuality
SIO_000300: 7.18541e5

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeQuality
all individuals: 18956
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 3.25e1
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GenotypeQuality
all individuals: 1073
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
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variant carriers: 1

GenotypeQuality
all individuals: 752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 700
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European (Non-Finnish)
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allele count: 2
allele frequency: 9.569377990430622e-5
allele num: 20900
num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.59e-2

QD
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.816491667469415e-5
allele num: 20762
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
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VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.186721991701245e-5
allele num: 19280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3508
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.709e1

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

DP
type: SiteQuality
SIO_000300: 6.67153e5

MQ
type: SiteQuality
SIO_000300: 5.759e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.413e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.677852348993289e-3
allele num: 596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.534646889528448e-4
allele num: 9034
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.02e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.47842e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

VQSLOD
type: SiteQuality
SIO_000300: -4.736e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.4495e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

FS
type: SiteQuality
SIO_000300: 8.715e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.802151363810988e-5
allele num: 20824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
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QD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.151e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.35e-2

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 90

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2372
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 2.004008016032064e-3
allele num: 8982
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European (Finnish)
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allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 75
allele frequency: 3.598848368522073e-3
allele num: 20840
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 288
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African
type: Population
allele count: 4
allele frequency: 1.005025125628141e-3
allele num: 3980
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 2290
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MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.02503e5

BaseQRankSum
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SIO_000300: 1.38e0

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele frequency: 0.0e0
allele num: 2284
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South Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 9.903931860948797e-5
allele num: 20194
num of homozygotes: 0

Other
type: Population
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 1
allele frequency: 3.52112676056338e-3
allele num: 284
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.557632398753894e-2
allele num: 642
num of homozygotes: 0

Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 17
allele frequency: 8.418342081806477e-4
allele num: 20194
num of homozygotes: 0

South Asian
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allele num: 8984
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 949
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1937
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 9927
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 517
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 957
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 443
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 267
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2369
bin: 9.75e1
variant carriers: 355

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 4

East Asian
type: Population
allele count: 14
allele frequency: 6.91699604743083e-3
allele num: 2024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 3.731343283582089e-2
allele num: 402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.399568034557236e-4
allele num: 1852
num of homozygotes: 0

African
type: Population
allele count: 123
allele frequency: 3.914704010184596e-2
allele num: 3142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 294
allele frequency: 1.664779161947905e-2
allele num: 17660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8792
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 2.016129032258064e-2
allele num: 248
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

FS
type: SiteQuality
SIO_000300: 6.2825e1

VQSLOD
type: SiteQuality
SIO_000300: -1.973e1

DP
type: SiteQuality
SIO_000300: 7.19278e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.775e1

GenotypeQuality
all individuals: 938
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3923
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10674
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 7.042253521126761e-3
allele num: 284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.670940170940171e-4
allele num: 3744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.493280238924838e-4
allele num: 20090
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.644e1

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 5.0275e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 7.12114e5

VQSLOD
type: SiteQuality
SIO_000300: -1.669e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.747e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

QD
type: SiteQuality
SIO_000300: 5.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e0

GenotypeQuality
all individuals: 856
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5119
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1542
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.836057645807138e-5
allele num: 20678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.56278831368529e-4
allele num: 3902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.3532e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.543e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.321e0

DP
type: SiteQuality
SIO_000300: 7.40893e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

MQ
type: SiteQuality
SIO_000300: 5.654e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.737e1

QD
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 28543
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9409
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2576
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 7.40913e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 493
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8311
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31390
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.414693954541168e-4
allele num: 21206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.101079057476327e-4
allele num: 9082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

DP
type: SiteQuality
SIO_000300: 7.59694e5

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7964
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.912363067292645e-4
allele num: 2556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 8.74e0

VQSLOD
type: SiteQuality
SIO_000300: -1.196e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.65403e5

GenotypeQuality
all individuals: 1381
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33468
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7662
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.834355828220859e-4
allele num: 2608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.72137e5

QD
type: SiteQuality
SIO_000300: 5.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 9.75e1
variant carriers: 136

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 846
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 7649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 606
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 532
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 6349
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.25e1
variant carriers: 6

African
type: Population
allele count: 26
allele frequency: 6.307617661329452e-3
allele num: 4122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 74
allele frequency: 3.414859252422704e-3
allele num: 21670
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 1.545972335231896e-2
allele num: 2458
num of homozygotes: 1

South Asian
type: Population
allele count: 4
allele frequency: 4.388852315119596e-4
allele num: 9114
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.290322580645161e-2
allele num: 310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.74213e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6349
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.384402399630826e-4
allele num: 21670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.245e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.74213e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.422475106685633e-4
allele num: 21090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.505e-1

DP
type: SiteQuality
SIO_000300: 7.59178e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 7.756e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 1

GenotypeQuality
all individuals: 2591
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.233700254022015e-4
allele num: 2362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 7.756e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.505e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 7.59178e5

GenotypeQuality
all individuals: 1321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 527
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4890
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 2.912621359223301e-4
allele num: 20600
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 8.703220191470844e-4
allele num: 2298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 7.45807e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.123e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 9721
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 733
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variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3998
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.108647450110865e-4
allele num: 9020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

DP
type: SiteQuality
SIO_000300: 7.46103e5

VQSLOD
type: SiteQuality
SIO_000300: -1.064e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.048e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 9.92e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 1194
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11233
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 686
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 527
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 2
allele frequency: 2.238638907544213e-4
allele num: 8934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.045917852457362e-5
allele num: 19818
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.52112676056338e-3
allele num: 284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.606e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 7.30215e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

QD
type: SiteQuality
SIO_000300: 1.094e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13160
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

FS
type: SiteQuality
SIO_000300: 1.07e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.177e0

DP
type: SiteQuality
SIO_000300: 7.12267e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 14116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.646903123345686e-4
allele num: 3778
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.248e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.808e1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
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GenotypeQuality
all individuals: 1293
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 9.25e1
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GenotypeQuality
all individuals: 3691
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.855511136493432e-4
allele num: 3502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.386e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 6.56255e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11878
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
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BaseQRankSum
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SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.15e-2

FS
type: SiteQuality
SIO_000300: 3.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.344e1

MQRankSum
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SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 5.95847e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 11902
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 3138
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

East Asian
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
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BaseQRankSum
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DP
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SIO_000300: 5.94477e5

MQRankSum
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: -6.58e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.28122998078155e-3
allele num: 3122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 5.94347e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

FS
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SIO_000300: 4.455e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.25e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.381999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

DP
type: SiteQuality
SIO_000300: 5.89511e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

FS
type: SiteQuality
SIO_000300: 5.816e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 1.893939393939394e-3
allele num: 528
num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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VQSLOD
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DP
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MQRankSum
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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African
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num of homozygotes: 0

Other
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South Asian
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.552870090634441e-4
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MQ
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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Other
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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Other
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VQSLOD
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 9236
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
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VQSLOD
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FS
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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FS
type: SiteQuality
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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Latino
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East Asian
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VQSLOD
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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Other
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African
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.079447322970639e-4
allele num: 9264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.354e1

MQRankSum
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SIO_000300: 9.88e-1

ReadPosRankSum
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DP
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ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 4.06e-1

InbreedingCoeff
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SIO_000300: -6.619999999999999e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 4.41e1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
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QD
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SIO_000300: 2.76e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
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allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

ReadPosRankSum
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SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.16e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.542e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.27712e5

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 46

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 2

South Asian
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allele count: 1
allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 1.553672316384181e-2
allele num: 2832
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 5.27712e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.16e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.542e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
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allele frequency: 1.440922190201729e-3
allele num: 694
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.986e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.3864e5

FS
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.008878127522195e-4
allele num: 9912
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Other
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South Asian
type: Population
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allele frequency: 0.0e0
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Latino
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VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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VQSLOD
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QD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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South Asian
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allele frequency: 1.354346220142822e-3
allele num: 8122
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10514
num of homozygotes: 0

Latino
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allele frequency: 3.816793893129771e-3
allele num: 524
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 3.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 5.82982e5

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.405994550408719e-4
allele num: 2936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

DP
type: SiteQuality
SIO_000300: 5.82982e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

QD
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 3.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1