X-99657497-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657497
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657497
    reference: chr 0
allele count: 1
allele frequency: 1.354334547719978e-5
allele num: 73837
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2475+25G>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2475+25G>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2616+25G>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

X-99657531-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657531
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657531
    reference: chr 0
allele count: 1
allele frequency: 1.213901601136212e-5
allele num: 82379
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2466T>C
  hgvsp: ENST00000420881.2:c.2466T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2466T>C
  hgvsp: ENST00000255531.7:c.2466T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2607T>C
  hgvsp: ENST00000373034.4:c.2607T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 429
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
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genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro869Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

X-99657539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657539
    reference: chr 0
allele count: 1
allele frequency: 1.200955960944912e-5
allele num: 83267
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2458G>A
  hgvsp: ENSP00000400327.2:p.Gly820Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2458G>A
  hgvsp: ENSP00000255531.7:p.Gly820Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2599G>A
  hgvsp: ENSP00000362125.4:p.Gly867Ser
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 427
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genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38873
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly867Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum

X-99657540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657540
    reference: chr 0
allele count: 3
allele frequency: 3.59505320678746e-5
allele num: 83448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2457C>T
  hgvsp: ENST00000420881.2:c.2457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2598C>T
  hgvsp: ENST00000373034.4:c.2598C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2457C>T
  hgvsp: ENST00000255531.7:c.2457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33795
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 367
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genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn866Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-99657560-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657560
    reference: chr 0
allele count: 2
allele frequency: 2.356878550048316e-5
allele num: 84858
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2578C>G
  hgvsp: ENSP00000362125.4:p.Gln860Glu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2437C>G
  hgvsp: ENSP00000255531.7:p.Gln813Glu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2437C>G
  hgvsp: ENSP00000400327.2:p.Gln813Glu
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 419
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln860Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

X-99657615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657615
    reference: chr 0
allele count: 2
allele frequency: 2.327665467918951e-5
allele num: 85923
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2382C>T
  hgvsp: ENST00000255531.7:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2523C>T
  hgvsp: ENST00000373034.4:c.2523C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2382C>T
  hgvsp: ENST00000420881.2:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg841Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-99657616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657616
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657616
    reference: chr 0
allele count: 2
allele frequency: 2.328261603473766e-5
allele num: 85901
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2381G>A
  hgvsp: ENSP00000400327.2:p.Arg794His
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2381G>A
  hgvsp: ENSP00000255531.7:p.Arg794His
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2522G>A
  hgvsp: ENSP00000362125.4:p.Arg841His
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1402
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
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  variant carriers: 0
hgvs: p.Arg841His
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-99657622-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657622
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657622
    reference: chr 0
allele count: 1
allele frequency: 1.162858305715449e-5
allele num: 85995
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2375A>G
  hgvsp: ENSP00000255531.7:p.Asn792Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2375A>G
  hgvsp: ENSP00000400327.2:p.Asn792Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2516A>G
  hgvsp: ENSP00000362125.4:p.Asn839Ser
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn839Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

X-99657626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657626
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657626
    reference: chr 0
allele count: 1
allele frequency: 1.162831261555636e-5
allele num: 85997
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2371C>G
  hgvsp: ENSP00000400327.2:p.Gln791Glu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2512C>G
  hgvsp: ENSP00000362125.4:p.Gln838Glu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2371C>G
  hgvsp: ENSP00000255531.7:p.Gln791Glu
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 896
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln838Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-99657630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657630
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657630
    reference: chr 0
allele count: 1
allele frequency: 1.162371703223257e-5
allele num: 86031
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2508G>A
  hgvsp: ENST00000373034.4:c.2508G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2367G>A
  hgvsp: ENST00000255531.7:c.2367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2367G>A
  hgvsp: ENST00000420881.2:c.2367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4884
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu836Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

X-99657634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657634
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657634
    reference: chr 0
allele count: 1
allele frequency: 1.16199351607618e-5
allele num: 86059
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2363T>C
  hgvsp: ENSP00000255531.7:p.Val788Ala
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2363T>C
  hgvsp: ENSP00000400327.2:p.Val788Ala
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2504T>C
  hgvsp: ENSP00000362125.4:p.Val835Ala
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39609
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  variant carriers: 0
hgvs: p.Val835Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-99657637-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657637
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657637
    reference: chr 0
allele count: 3
allele frequency: 3.484927687750479e-5
allele num: 86085
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2360A>G
  hgvsp: ENSP00000400327.2:p.Asn787Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2360A>G
  hgvsp: ENSP00000255531.7:p.Asn787Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2501A>G
  hgvsp: ENSP00000362125.4:p.Asn834Ser
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn834Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-99657638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657638
    reference: chr 0
allele count: 1
allele frequency: 1.161453675420156e-5
allele num: 86099
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2500A>G
  hgvsp: ENSP00000362125.4:p.Asn834Asp
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2359A>G
  hgvsp: ENSP00000255531.7:p.Asn787Asp
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2359A>G
  hgvsp: ENSP00000400327.2:p.Asn787Asp
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 171
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 855
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 608
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn834Asp
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-99657642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657642
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657642
    reference: chr 0
allele count: 1
allele frequency: 1.161494146069504e-5
allele num: 86096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2355C>T
  hgvsp: ENST00000420881.2:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2355C>T
  hgvsp: ENST00000255531.7:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2496C>T
  hgvsp: ENST00000373034.4:c.2496C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31625
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4417
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genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe832Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-99657658-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657658
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657658
    reference: chr 0
allele count: 1
allele frequency: 1.164225673504552e-5
allele num: 85894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2339G>T
  hgvsp: ENSP00000255531.7:p.Arg780Leu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2339G>T
  hgvsp: ENSP00000400327.2:p.Arg780Leu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2480G>T
  hgvsp: ENSP00000362125.4:p.Arg827Leu
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
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genotype depth: GenotypeDepth
  all individuals: 3861
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1574
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  variant carriers: 1
hgvs: p.Arg827Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

X-99657658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657658
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657658
    reference: chr 0
allele count: 3
allele frequency: 3.492677020513656e-5
allele num: 85894
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2480G>A
  hgvsp: ENSP00000362125.4:p.Arg827His
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2339G>A
  hgvsp: ENSP00000400327.2:p.Arg780His
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2339G>A
  hgvsp: ENSP00000255531.7:p.Arg780His
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg827His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

X-99657659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657659
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657659
    reference: chr 0
allele count: 1
allele frequency: 1.163710841130196e-5
allele num: 85932
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2479C>T
  hgvsp: ENSP00000362125.4:p.Arg827Cys
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2338C>T
  hgvsp: ENSP00000255531.7:p.Arg780Cys
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2338C>T
  hgvsp: ENSP00000400327.2:p.Arg780Cys
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg827Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

X-99657669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657669
    reference: chr 0
allele count: 239
allele frequency: 2.784152464382652e-3
allele num: 85843
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2328G>A
  hgvsp: ENST00000255531.7:c.2328G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2469G>A
  hgvsp: ENST00000373034.4:c.2469G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2328G>A
  hgvsp: ENST00000420881.2:c.2328G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 3.75e1
  variant carriers: 6
hgvs: p.Leu823Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

X-99657678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657678
    reference: chr 0
allele count: 2
allele frequency: 2.331953594123477e-5
allele num: 85765
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2319G>A
  hgvsp: ENST00000420881.2:c.2319G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2460G>A
  hgvsp: ENST00000373034.4:c.2460G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2319G>A
  hgvsp: ENST00000255531.7:c.2319G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1792
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  variant carriers: 0
hgvs: p.Thr820Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS

X-99657679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657679
    reference: chr 0
allele count: 3
allele frequency: 3.495281370150297e-5
allele num: 85830
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2459C>T
  hgvsp: ENSP00000362125.4:p.Thr820Met
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2318C>T
  hgvsp: ENSP00000255531.7:p.Thr773Met
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2318C>T
  hgvsp: ENSP00000400327.2:p.Thr773Met
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 834
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  variant carriers: 0
hgvs: p.Thr820Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-99657687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657687
    reference: chr 0
allele count: 1
allele frequency: 1.164225673504552e-5
allele num: 85894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2310C>T
  hgvsp: ENST00000420881.2:c.2310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2310C>T
  hgvsp: ENST00000255531.7:c.2310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2451C>T
  hgvsp: ENST00000373034.4:c.2451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4411
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His817His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

X-99657703-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657703
    reference: chr 0
allele count: 1
allele frequency: 1.162682541158962e-5
allele num: 86008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2294A>G
  hgvsp: ENSP00000255531.7:p.Asn765Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2294A>G
  hgvsp: ENSP00000400327.2:p.Asn765Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2435A>G
  hgvsp: ENSP00000362125.4:p.Asn812Ser
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 430
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genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
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  variant carriers: 0
hgvs: p.Asn812Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-99657708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657708
    reference: chr 0
allele count: 1
allele frequency: 1.162007018522392e-5
allele num: 86058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2289C>T
  hgvsp: ENST00000255531.7:c.2289C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2289C>T
  hgvsp: ENST00000420881.2:c.2289C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2430C>T
  hgvsp: ENST00000373034.4:c.2430C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 601
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  variant carriers: 0
hgvs: p.Ser810Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS

X-99657721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657721
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657721
    reference: chr 0
allele count: 1
allele frequency: 1.15950095079078e-5
allele num: 86244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2276C>T
  hgvsp: ENSP00000400327.2:p.Ser759Phe
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2276C>T
  hgvsp: ENSP00000255531.7:p.Ser759Phe
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2417C>T
  hgvsp: ENSP00000362125.4:p.Ser806Phe
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser806Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-99657752-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657749
    reference: chr 0
allele count: 1
allele frequency: 1.157554781280024e-5
allele num: 86389
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2383_2385delGAG
  hgvsp: ENSP00000362125.4:p.Glu795del
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2242_2244delGAG
  hgvsp: ENSP00000400327.2:p.Glu748del
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2242_2244delGAG
  hgvsp: ENSP00000255531.7:p.Glu748del
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 4416
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu795del
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: TCTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: FS

X-99657776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657776
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657776
    reference: chr 0
allele count: 2
allele frequency: 2.317309140625905e-5
allele num: 86307
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2362C>T
  hgvsp: ENST00000373034.4:c.2362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2221C>T
  hgvsp: ENST00000420881.2:c.2221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2221C>T
  hgvsp: ENST00000255531.7:c.2221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 260
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  variant carriers: 0
hgvs: p.Leu788Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-99657777-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657777
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657777
    reference: chr 0
allele count: 2
allele frequency: 2.317711954758263e-5
allele num: 86292
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2361C>G
  hgvsp: ENST00000373034.4:c.2361C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2220C>G
  hgvsp: ENST00000420881.2:c.2220C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2220C>G
  hgvsp: ENST00000255531.7:c.2220C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg787Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-99657778-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657778
    reference: chr 0
allele count: 2
allele frequency: 2.317873119625432e-5
allele num: 86286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2219G>T
  hgvsp: ENSP00000255531.7:p.Arg740Leu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2219G>T
  hgvsp: ENSP00000400327.2:p.Arg740Leu
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2360G>T
  hgvsp: ENSP00000362125.4:p.Arg787Leu
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
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genotype depth: GenotypeDepth
  all individuals: 228
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genotype depth: GenotypeDepth
  all individuals: 3724
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 870
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg787Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-99657778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657778
    reference: chr 0
allele count: 1
allele frequency: 1.158936559812716e-5
allele num: 86286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2219G>A
  hgvsp: ENSP00000255531.7:p.Arg740His
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2219G>A
  hgvsp: ENSP00000400327.2:p.Arg740His
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2360G>A
  hgvsp: ENSP00000362125.4:p.Arg787His
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg787His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

X-99657779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657779
    reference: chr 0
allele count: 4
allele frequency: 4.637950026088469e-5
allele num: 86245
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2218C>T
  hgvsp: ENSP00000400327.2:p.Arg740Cys
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2359C>T
  hgvsp: ENSP00000362125.4:p.Arg787Cys
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2218C>T
  hgvsp: ENSP00000255531.7:p.Arg740Cys
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg787Cys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-99657780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657780
    reference: chr 0
allele count: 1
allele frequency: 1.159514395371219e-5
allele num: 86243
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2217C>T
  hgvsp: ENST00000255531.7:c.2217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2358C>T
  hgvsp: ENST00000373034.4:c.2358C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2217C>T
  hgvsp: ENST00000420881.2:c.2217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42386
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  variant carriers: 0
hgvs: p.Ile786Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-99657819-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657819
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657819
    reference: chr 0
allele count: 9
allele frequency: 1.057368093330357e-4
allele num: 85117
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2178G>T
  hgvsp: ENSP00000400327.2:p.Lys726Asn
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2319G>T
  hgvsp: ENSP00000362125.4:p.Lys773Asn
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2178G>T
  hgvsp: ENSP00000255531.7:p.Lys726Asn
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Lys773Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-99657828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657828
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657828
    reference: chr 0
allele count: 3
allele frequency: 3.545680179647796e-5
allele num: 84610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2169G>A
  hgvsp: ENST00000420881.2:c.2169G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2169G>A
  hgvsp: ENST00000255531.7:c.2169G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2310G>A
  hgvsp: ENST00000373034.4:c.2310G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly770Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

X-99657832-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657832
    reference: chr 0
allele count: 1
allele frequency: 1.185620791046192e-5
allele num: 84344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2165A>G
  hgvsp: ENSP00000400327.2:p.Tyr722Cys
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2306A>G
  hgvsp: ENSP00000362125.4:p.Tyr769Cys
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2165A>G
  hgvsp: ENSP00000255531.7:p.Tyr722Cys
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Tyr769Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS

X-99657836-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657836
    reference: chr 0
allele count: 2
allele frequency: 2.385012580941364e-5
allele num: 83857
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2302T>C
  hgvsp: ENSP00000362125.4:p.Ser768Pro
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2161T>C
  hgvsp: ENSP00000255531.7:p.Ser721Pro
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2161T>C
  hgvsp: ENSP00000400327.2:p.Ser721Pro
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser768Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-99657858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657858
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657858
    reference: chr 0
allele count: 1
allele frequency: 1.231557427522845e-5
allele num: 81198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-9G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-9G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-9G>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-99657859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657859
    reference: chr 0
allele count: 1
allele frequency: 1.231026799453424e-5
allele num: 81233
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-10T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-10T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-10T>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9982
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-99657860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657860
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81086
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-11C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-11C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-11C>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-99657860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657860
    reference: chr 0
allele count: 1
allele frequency: 1.233258515650051e-5
allele num: 81086
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-11C>G
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-11C>G
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-11C>G
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-99657870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657870
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657870
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 79909
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-21G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-21G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-21G>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-99657884-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657884
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657884
    reference: chr 0
allele count: 1
allele frequency: 1.29264099481651e-5
allele num: 77361
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-35T>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-35T>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-35T>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
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filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-99657887-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657887
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657887
    reference: chr 0
allele count: 11
allele frequency: 1.424095699230988e-4
allele num: 77242
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-38G>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-38G>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-38G>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 360
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  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

X-99657897-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099657897
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099657897
    reference: chr 0
allele count: 2
allele frequency: 2.674547667125797e-5
allele num: 74779
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-48T>G
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2289-48T>G
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-48T>G
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-99658480-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658480
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658480
    reference: chr 0
allele count: 1
allele frequency: 1.264782141276165e-5
allele num: 79065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-631A>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2288+42A>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-631A>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
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site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
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X-99658491-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658491
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658491
    reference: chr 0
allele count: 1
allele frequency: 1.263439841311956e-5
allele num: 79149
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-642G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-642G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2288+31G>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
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site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

X-99658492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658492
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658492
    reference: chr 0
allele count: 3
allele frequency: 3.790319523935868e-5
allele num: 79149
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2288+30G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-643G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-643G>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 151
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 973
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-99658513-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658513
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658513
    reference: chr 0
allele count: 1
allele frequency: 1.259255528131768e-5
allele num: 79412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-664G>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2288+9G>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-664G>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 636
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20075
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5403
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-99658520-A-ACCTCTTTCCCCTTAGGCTCACTTTCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658520
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658547
    reference: chr 0
allele count: 2
allele frequency: 2.517940324814302e-5
allele num: 79430
alternate allele: ACCTCTTTCCCCTTAGGCTCACTTTCTC
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 269
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genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

X-99658546-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658546
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658546
    reference: chr 0
allele count: 1
allele frequency: 1.274567284406944e-5
allele num: 78458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-697A>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2264A>C
  hgvsp: ENSP00000362125.4:p.Glu755Ala
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-697A>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3656
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39813
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5296
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
hgvs: p.Glu755Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-99658560-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658560
    reference: chr 0
allele count: 2
allele frequency: 2.581144737691166e-5
allele num: 77485
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-711C>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-711C>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2250C>A
  hgvsp: ENSP00000362125.4:p.Asp750Glu
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp750Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-99658572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658572
    reference: chr 0
allele count: 2
allele frequency: 2.647954455183371e-5
allele num: 75530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-723C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-723C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2238C>T
  hgvsp: ENST00000373034.4:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 410
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ser746Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-99658576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658576
    reference: chr 0
allele count: 1
allele frequency: 1.332232021528869e-5
allele num: 75062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-727T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2234T>C
  hgvsp: ENSP00000362125.4:p.Ile745Thr
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-727T>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
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  variant carriers: 0
hgvs: p.Ile745Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

X-99658582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658582
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658582
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 73719
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-733C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2228C>T
  hgvsp: ENSP00000362125.4:p.Ser743Phe
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-733C>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser743Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-99658619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658619
    reference: chr 0
allele count: 2
allele frequency: 3.178639542275906e-5
allele num: 62920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-770G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-770G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2191G>A
  hgvsp: ENSP00000362125.4:p.Gly731Arg
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15409
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly731Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

X-99658634-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658634
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658634
    reference: chr 0
allele count: 5
allele frequency: 8.806693086745927e-5
allele num: 56775
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-785G>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2176G>A
  hgvsp: ENSP00000362125.4:p.Gly726Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-785G>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly726Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-99658635-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658635
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658635
    reference: chr 0
allele count: 1
allele frequency: 1.787214269118725e-5
allele num: 55953
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-786C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-786C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2175C>T
  hgvsp: ENST00000373034.4:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 242
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Leu725Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
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X-99658638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658638
    reference: chr 0
allele count: 1
allele frequency: 1.828287260494369e-5
allele num: 54696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-789C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-789C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2172C>T
  hgvsp: ENST00000373034.4:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Leu724Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-99658640-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658640
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658640
    reference: chr 0
allele count: 1
allele frequency: 1.863446630888491e-5
allele num: 53664
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2170C>A
  hgvsp: ENSP00000362125.4:p.Leu724Ile
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-791C>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-791C>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Leu724Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
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X-99658651-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658651
    reference: chr 0
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    type: ExactPosition
    position: 24099658651
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 49745
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
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  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
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  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
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  gene symbol: PCDH19
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  hgvsp: ENSP00000362125.4:p.Thr720Ser
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
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  ensembl gene: ENSG00000165194
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  gene symbol: PCDH19
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  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr720Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
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X-99658660-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658660
    reference: chr 0
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    type: ExactPosition
    position: 24099658660
    reference: chr 0
allele count: 2
allele frequency: 4.34291670285764e-5
allele num: 46052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-811A>G
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-811A>G
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000165194
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  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
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site quality: VQSLOD
site quality: FS
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site quality: QD
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X-99658681-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658681
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658681
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allele count: 0
allele frequency: 0.0e0
allele num: 37182
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2148-19C>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-832C>A
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000165194
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  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-832C>A
  variant of: http://identifiers.org/hgnc/14270
canonical: true
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genotype depth: GenotypeDepth
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population: African
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population: Latino
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reference allele: G
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X-99658689-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658689
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658688
    reference: chr 0
allele count: 1
allele frequency: 2.979826574093388e-5
allele num: 33559
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2148-28delA
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
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  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-841delA
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/14270
canonical: true
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: AT
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

X-99658693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658693
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658693
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 31562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-844T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2148-31T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-844T>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-99658712-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099658712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099658712
    reference: chr 0
allele count: 4
allele frequency: 1.588436184576285e-4
allele num: 25182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2148-50C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2148-863C>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2148-863C>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-99661400-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661400
    reference: chr 0
allele count: 8
allele frequency: 3.955891806359096e-4
allele num: 20223
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2147+49T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2147+49T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2147+49T>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
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site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
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site quality: DP
site quality: QD

X-99661419-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661419
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661419
    reference: chr 0
allele count: 1
allele frequency: 4.740459824602987e-5
allele num: 21095
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2147+30G>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2147+30G>T
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2147+30G>T
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24240
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-99661426-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661426
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661426
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 22378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2147+23T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2147+23T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2147+23T>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24041
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18947
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

X-99661431-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661431
    reference: chr 0
allele count: 1
allele frequency: 4.261303106489965e-5
allele num: 23467
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2147+18T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2147+18T>C
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2147+18T>C
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17087
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

X-99661463-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661463
    reference: chr 0
allele count: 1
allele frequency: 2.563116749967961e-5
allele num: 39015
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2133G>T
  hgvsp: ENST00000255531.7:c.2133G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2133G>T
  hgvsp: ENST00000420881.2:c.2133G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2133G>T
  hgvsp: ENST00000373034.4:c.2133G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg711Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-99661463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661463
    reference: chr 0
allele count: 1
allele frequency: 2.563116749967961e-5
allele num: 39015
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2133G>A
  hgvsp: ENST00000373034.4:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2133G>A
  hgvsp: ENST00000420881.2:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2133G>A
  hgvsp: ENST00000255531.7:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg711Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

X-99661485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661485
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661485
    reference: chr 0
allele count: 5
allele frequency: 1.013150696034528e-4
allele num: 49351
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2111A>G
  hgvsp: ENSP00000255531.7:p.Lys704Arg
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2111A>G
  hgvsp: ENSP00000362125.4:p.Lys704Arg
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2111A>G
  hgvsp: ENSP00000400327.2:p.Lys704Arg
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 206
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys704Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-99661501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661501
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661501
    reference: chr 0
allele count: 1
allele frequency: 1.84372580109886e-5
allele num: 54238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2095G>A
  hgvsp: ENSP00000400327.2:p.Val699Met
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2095G>A
  hgvsp: ENSP00000255531.7:p.Val699Met
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2095G>A
  hgvsp: ENSP00000362125.4:p.Val699Met
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val699Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

X-99661514-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661514
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661514
    reference: chr 0
allele count: 1
allele frequency: 1.749536372861192e-5
allele num: 57158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2082A>T
  hgvsp: ENST00000420881.2:c.2082A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2082A>T
  hgvsp: ENST00000373034.4:c.2082A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2082A>T
  hgvsp: ENST00000255531.7:c.2082A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2007
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genotype quality: GenotypeQuality
  all individuals: 786
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  variant carriers: 0
hgvs: p.Val694Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-99661541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661541
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661541
    reference: chr 0
allele count: 1
allele frequency: 1.53193314643749e-5
allele num: 65277
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2055G>A
  hgvsp: ENST00000255531.7:c.2055G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2055G>A
  hgvsp: ENST00000373034.4:c.2055G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2055G>A
  hgvsp: ENST00000420881.2:c.2055G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 255
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  variant carriers: 0
hgvs: p.Leu685Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-99661550-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661550
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661550
    reference: chr 0
allele count: 1
allele frequency: 1.459491804953515e-5
allele num: 68517
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2046T>G
  hgvsp: ENSP00000400327.2:p.Ile682Met
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2046T>G
  hgvsp: ENSP00000362125.4:p.Ile682Met
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2046T>G
  hgvsp: ENSP00000255531.7:p.Ile682Met
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile682Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-99661562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661562
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661562
    reference: chr 0
allele count: 1
allele frequency: 1.384504624245445e-5
allele num: 72228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2034C>T
  hgvsp: ENST00000420881.2:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2034C>T
  hgvsp: ENST00000255531.7:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2034C>T
  hgvsp: ENST00000373034.4:c.2034C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser678Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

X-99661572-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099661572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099661572
    reference: chr 0
allele count: 18
allele frequency: 2.386571557370528e-4
allele num: 75422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000400327
  ensembl transcript: ENST00000420881
  gene symbol: PCDH19
  hgvsc: ENST00000420881.2:c.2024T>G
  hgvsp: ENSP00000400327.2:p.Val675Gly
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000255531
  ensembl transcript: ENST00000255531
  gene symbol: PCDH19
  hgvsc: ENST00000255531.7:c.2024T>G
  hgvsp: ENSP00000255531.7:p.Val675Gly
  variant of: http://identifiers.org/hgnc/14270
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165194
  ensembl protein: ENSP00000362125
  ensembl transcript: ENST00000373034
  gene symbol: PCDH19
  hgvsc: ENST00000373034.4:c.2024T>G
  hgvsp: ENSP00000362125.4:p.Val675Gly
  variant of: http://identifiers.org/hgnc/14270
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val675Gly
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 23344
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8333
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.41622999575131e-4
allele num: 7061
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 3.007e1

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.305091e6

GenotypeQuality
all individuals: 861
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45577
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.087429317094389e-4
allele num: 9196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4069
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7589
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8977
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.517729e6

QD
type: SiteQuality
SIO_000300: 3.089e1

GenotypeQuality
all individuals: 468
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.170798419658751e-5
allele num: 46066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4121
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.442e0

QD
type: SiteQuality
SIO_000300: 2.629e1

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 1.539798e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

GenotypeQuality
all individuals: 4415
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9071
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.495334184943815e-5
allele num: 46187
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

FS
type: SiteQuality
SIO_000300: 9.167999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.543685e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7769
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.261393901945327e-5
allele num: 46933
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4265
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.012e-1

FS
type: SiteQuality
SIO_000300: 5.807e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

DP
type: SiteQuality
SIO_000300: 1.574638e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.107e1

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.522533495736906e-4
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106815548298746e-5
allele num: 47465
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 2.079e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9228
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East Asian
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allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9825
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.107525975257645e-5
allele num: 47449
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9225
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4399
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7850
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Other
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allele frequency: 0.0e0
allele num: 608
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9845
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European (Non-Finnish)
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allele frequency: 2.105440458143844e-5
allele num: 47496
num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
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QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4393
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.105750805449683e-5
allele num: 47489
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7849
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MQ
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.593971e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4399
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.104952954301471e-5
allele num: 47507
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 608
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MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.144e0

FS
type: SiteQuality
SIO_000300: 5.219e0

VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.59419e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7863
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9863
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47518
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4403
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6575
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.647446457990115e-3
allele num: 607
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQ
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.594379e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47527
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.813882532418002e-4
allele num: 7866
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4409
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 607
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.82e-2

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.382e0

DP
type: SiteQuality
SIO_000300: 1.594132e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7865
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4407
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.0827197921178e-4
allele num: 9236
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9876
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
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QD
type: SiteQuality
SIO_000300: 3.175e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47529
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9877
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4413
num of homozygotes: 0

Latino
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allele frequency: 1.083423618634886e-4
allele num: 9230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 9863
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.108236881496005e-5
allele num: 47433
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
allele num: 609
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MQ
type: SiteQuality
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QD
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9209
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.324710644488014e-5
allele num: 47433
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 609
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African
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South Asian
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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MQRankSum
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 3

European (Non-Finnish)
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allele frequency: 2.111129876710015e-5
allele num: 47368
num of homozygotes: 0

East Asian
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Other
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allele frequency: 3.273322422258593e-3
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South Asian
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African
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allele frequency: 2.879447146147939e-2
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Latino
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allele frequency: 1.085776330076004e-3
allele num: 9210
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European (Finnish)
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DP
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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East Asian
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Other
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Latino
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African
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South Asian
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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DP
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QD
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FS
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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allele frequency: 1.086602194936434e-4
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Other
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African
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allele frequency: 2.561475409836066e-4
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47383
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 2.555e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

QD
type: SiteQuality
SIO_000300: 1.283e1

DP
type: SiteQuality
SIO_000300: 1.565394e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4405
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.521838380763963e-4
allele num: 6571
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9205
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47422
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

FS
type: SiteQuality
SIO_000300: 1.3159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.571481e6

QD
type: SiteQuality
SIO_000300: 1.005e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9215
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4427
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9875
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African
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allele count: 1
allele frequency: 1.275510204081633e-4
allele num: 7840
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.582673e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e0

MQRankSum
type: SiteQuality
SIO_000300: -1.102e0

FS
type: SiteQuality
SIO_000300: 4.675e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.177e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4433
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47491
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.273885350318471e-4
allele num: 7850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9221
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9875
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.18e0

DP
type: SiteQuality
SIO_000300: 1.589533e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.853e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.847e1

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 1.363e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100840336134454e-5
allele num: 47600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.372e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.553e0

DP
type: SiteQuality
SIO_000300: 1.607592e6

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4485
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.009489198465576e-4
allele num: 9906
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

MQ
type: SiteQuality
SIO_000300: 5.503e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.626788e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.011429149388085e-4
allele num: 9887
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47583
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.268552581504503e-4
allele num: 7883
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 1.631388e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.044e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.537105163009007e-4
allele num: 7883
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9881
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47571
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.82e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

QD
type: SiteQuality
SIO_000300: 2.41e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.631023e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9881
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102076851929706e-5
allele num: 47572
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
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Other
type: Population
allele count: 1
allele frequency: 1.612903225806452e-3
allele num: 620
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MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.631688e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
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African
type: Population
allele count: 1
allele frequency: 1.269035532994924e-4
allele num: 7880
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9254
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9881
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47572
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.631688e6

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.269196598553116e-4
allele num: 7879
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.103049421661409e-5
allele num: 47550
num of homozygotes: 0

Latino
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allele frequency: 2.162629757785467e-4
allele num: 9248
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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allele num: 9870
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

DP
type: SiteQuality
SIO_000300: 1.631589e6

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.103270585760858e-5
allele num: 47545
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

East Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.087e1

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.63077e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.89e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
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allele frequency: 2.135885003951387e-5
allele num: 46819
num of homozygotes: 0

European (Finnish)
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African
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 8.249123530624871e-4
allele num: 9698
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 7765
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.453555909306028e-5
allele num: 46486
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4433
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
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allele num: 6512
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.587324e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
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allele num: 6494
num of homozygotes: 0

South Asian
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Other
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African
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European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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FS
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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Latino
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FS
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.255554302469832e-5
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African
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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East Asian
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South Asian
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Latino
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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South Asian
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FS
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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East Asian
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European (Non-Finnish)
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FS
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DP
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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bin: 6.25e1
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Other
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allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.626991139875337e-4
allele num: 41873
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Latino
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African
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East Asian
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South Asian
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European (Finnish)
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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VQSLOD
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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Other
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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bin: 9.75e1
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African
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allele frequency: 1.529753709652746e-4
allele num: 6537
num of homozygotes: 0

East Asian
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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ClippingRankSum
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DP
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MQRankSum
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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East Asian
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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VQSLOD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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DP
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Latino
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East Asian
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InbreedingCoeff
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QD
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MQRankSum
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DP
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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African
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 4.620965319655276e-5
allele num: 43281
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.11e-2

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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DP
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FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8929
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.340878765888715e-5
allele num: 42719
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6320
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Other
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allele frequency: 0.0e0
allele num: 562
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South Asian
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allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

FS
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42139
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 557
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Latino
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allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

East Asian
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allele frequency: 3.19744204636291e-4
allele num: 6255
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8919
num of homozygotes: 0

FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.86e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 543
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4197
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.884004884004884e-5
allele num: 40950
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

QD
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FS
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InbreedingCoeff
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MQRankSum
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6105
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
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European (Non-Finnish)
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allele frequency: 2.458210422812193e-5
allele num: 40680
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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QD
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DP
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39817
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8525
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4110
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6291
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 531
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
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DP
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VQSLOD
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MQ
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele frequency: 3.578457684737878e-4
allele num: 5589
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7581
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3617
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 463
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33360
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.308e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 430
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.680785262874815e-4
allele num: 29748
num of homozygotes: 0

InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.416934326522244e-5
allele num: 29266
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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MQ
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.439677512237259e-4
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 6.75e1
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Other
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African
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQ
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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Other
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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MQRankSum
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DP
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 8.376612497905847e-5
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num of homozygotes: 0

European (Finnish)
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Latino
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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FS
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ClippingRankSum
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DP
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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Other
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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DP
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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South Asian
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Other
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African
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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South Asian
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Other
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.331002331002331e-4
allele num: 12870
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1964
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South Asian
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Latino
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allele frequency: 5.205622071837585e-4
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Other
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 9

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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East Asian
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African
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allele frequency: 3.472222222222222e-3
allele num: 2304
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 936
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East Asian
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allele frequency: 8.278145695364238e-4
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African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 11535
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 1093
num of homozygotes: 0

QD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 3.790750568612585e-4
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 741
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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Other
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DP
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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Latino
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num of homozygotes: 0

QD
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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FS
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 289
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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QD
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InbreedingCoeff
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MQ
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DP
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FS
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VQSLOD
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 7.785736530675802e-4
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num of homozygotes: 0

African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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FS
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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South Asian
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East Asian
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Other
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Latino
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African
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European (Non-Finnish)
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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QD
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MQRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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African
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Latino
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South Asian
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VQSLOD
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FS
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QD
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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East Asian
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South Asian
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DP
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3495
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

DP
type: SiteQuality
SIO_000300: 1.235848e6

FS
type: SiteQuality
SIO_000300: 5.886e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.645e1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1