X-153229772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153229772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153229772
    reference: chr 0
allele count: 444
allele frequency: 5.512378020013409e-3
allele num: 80546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.343-37C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.343-37C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.343-37C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 21
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 18
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 15
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 22
genotype depth: GenotypeDepth
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  variant carriers: 25
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2278
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  variant carriers: 5
num of homozygotes: 10
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

X-153229775-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153229775
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153229775
    reference: chr 0
allele count: 1
allele frequency: 1.242112585084712e-5
allele num: 80508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.343-40T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.343-40T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.343-40T>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-153229776-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153229776
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153229776
    reference: chr 0
allele count: 1
allele frequency: 1.242405794580626e-5
allele num: 80489
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.343-41T>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.343-41T>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.343-41T>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

X-153229779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153229779
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153229779
    reference: chr 0
allele count: 32
allele frequency: 3.978367626033443e-4
allele num: 80435
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.343-44G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.343-44G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.343-44G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153229783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153229783
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153229783
    reference: chr 0
allele count: 204
allele frequency: 2.539271577584705e-3
allele num: 80338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.343-48G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.343-48G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
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  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
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site quality: MQRankSum
site quality: ReadPosRankSum
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X-153229994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153229994
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153229994
    reference: chr 0
allele count: 1
allele frequency: 1.227340230985431e-5
allele num: 81477
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+35G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
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site quality: ClippingRankSum
site quality: VQSLOD
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X-153230001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230001
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230001
    reference: chr 0
allele count: 3
allele frequency: 3.677371904878647e-5
allele num: 81580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+28C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+28C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
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  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+28C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
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site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
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X-153230002-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230002
    reference: chr 0
allele count: 4
allele frequency: 4.90400411936346e-5
allele num: 81566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+27G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+27G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+27G>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
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site quality: MQ
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X-153230002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230002
    reference: chr 0
allele count: 1
allele frequency: 1.226001029840865e-5
allele num: 81566
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+27G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+27G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+27G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153230008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230008
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230008
    reference: chr 0
allele count: 1
allele frequency: 1.223555898151207e-5
allele num: 81729
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+21C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+21C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+21C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3470
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num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-153230018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230018
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230018
    reference: chr 0
allele count: 5
allele frequency: 6.09956937040245e-5
allele num: 81973
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+11C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+11C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+11C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153230020-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230020
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230020
    reference: chr 0
allele count: 1
allele frequency: 1.219571686423728e-5
allele num: 81996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.342+9G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.342+9G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.342+9G>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

X-153230038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230038
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230038
    reference: chr 0
allele count: 4
allele frequency: 4.816781667328974e-5
allele num: 83043
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.333C>T
  hgvsp: ENST00000310441.7:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.333C>T
  hgvsp: ENST00000369984.4:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.333C>T
  hgvsp: ENST00000354233.3:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr111Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-153230048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230048
    reference: chr 0
allele count: 2
allele frequency: 2.385752287340006e-5
allele num: 83831
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.323A>G
  hgvsp: ENSP00000359001.4:p.Asn108Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.323A>G
  hgvsp: ENSP00000346174.3:p.Asn108Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.323A>G
  hgvsp: ENSP00000309555.7:p.Asn108Ser
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1050
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genotype quality: GenotypeQuality
  all individuals: 768
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn108Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-153230074-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230074
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230074
    reference: chr 0
allele count: 1
allele frequency: 1.168907071887785e-5
allele num: 85550
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.297G>C
  hgvsp: ENST00000310441.7:c.297G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.297G>C
  hgvsp: ENST00000354233.3:c.297G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.297G>C
  hgvsp: ENST00000369984.4:c.297G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 356
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1813
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genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly99Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-153230098-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230098
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230098
    reference: chr 0
allele count: 1
allele frequency: 1.164144353899884e-5
allele num: 85900
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.273G>C
  hgvsp: ENST00000310441.7:c.273G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.273G>C
  hgvsp: ENST00000369984.4:c.273G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.273G>C
  hgvsp: ENST00000354233.3:c.273G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly91Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-153230101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230101
    reference: chr 0
allele count: 9
allele frequency: 1.048083753537283e-4
allele num: 85871
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.270C>T
  hgvsp: ENST00000354233.3:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.270C>T
  hgvsp: ENST00000310441.7:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.270C>T
  hgvsp: ENST00000369984.4:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9664
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp90Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-153230107-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230107
    reference: chr 0
allele count: 1
allele frequency: 1.165963202201339e-5
allele num: 85766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.264G>A
  hgvsp: ENST00000310441.7:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.264G>A
  hgvsp: ENST00000369984.4:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.264G>A
  hgvsp: ENST00000354233.3:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26201
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genotype depth: GenotypeDepth
  all individuals: 41
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1080
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 72
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val88Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-153230119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230119
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230119
    reference: chr 0
allele count: 2
allele frequency: 2.340111857346781e-5
allele num: 85466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.252C>T
  hgvsp: ENST00000354233.3:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.252C>T
  hgvsp: ENST00000310441.7:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.252C>T
  hgvsp: ENST00000369984.4:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 354
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 200
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genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala84Ala
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153230119-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230119
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230119
    reference: chr 0
allele count: 1
allele frequency: 1.170055928673391e-5
allele num: 85466
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.252C>G
  hgvsp: ENST00000310441.7:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.252C>G
  hgvsp: ENST00000354233.3:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.252C>G
  hgvsp: ENST00000369984.4:c.252C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 9602
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala84Ala
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

X-153230128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230128
    reference: chr 0
allele count: 2
allele frequency: 2.348768658031027e-5
allele num: 85151
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.243G>A
  hgvsp: ENST00000354233.3:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.243G>A
  hgvsp: ENST00000369984.4:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.243G>A
  hgvsp: ENST00000310441.7:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly81Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-153230134-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230134
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230134
    reference: chr 0
allele count: 11
allele frequency: 1.295779293446891e-4
allele num: 84891
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.237C>A
  hgvsp: ENST00000369984.4:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.237C>A
  hgvsp: ENST00000310441.7:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.237C>A
  hgvsp: ENST00000354233.3:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2011
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro79Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

X-153230152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230152
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230152
    reference: chr 0
allele count: 1
allele frequency: 1.19849469066852e-5
allele num: 83438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.219C>T
  hgvsp: ENST00000369984.4:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.219C>T
  hgvsp: ENST00000354233.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.219C>T
  hgvsp: ENST00000310441.7:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ala73Ala
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-153230183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230183
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230183
    reference: chr 0
allele count: 3
allele frequency: 3.720837932702445e-5
allele num: 80627
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-6C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-6C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-6C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.194-6C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-153230183-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230183
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230183
    reference: chr 0
allele count: 1
allele frequency: 1.240279310900815e-5
allele num: 80627
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-6C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-6C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-6C>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
hgvs: c.194-6C>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-153230189-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230189
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230189
    reference: chr 0
allele count: 1
allele frequency: 1.256028938906752e-5
allele num: 79616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-12T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-12T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-12T>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11259
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

X-153230209-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230209
    reference: chr 0
allele count: 1
allele frequency: 1.303254225801827e-5
allele num: 76731
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-32T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-32T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-32T>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 351
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1421
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4980
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-153230212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230212
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230212
    reference: chr 0
allele count: 2
allele frequency: 2.629641316924372e-5
allele num: 76056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-35G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-153230213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230213
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230213
    reference: chr 0
allele count: 13
allele frequency: 1.711517194165043e-4
allele num: 75956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-36C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-36C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-36C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-153230216-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230216
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230215
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 75619
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-40delC
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-40delC
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-40delC
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: AG
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-153230219-CCCCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230219
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230215
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 74681
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-46_194-43delTGGG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-46_194-43delTGGG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-46_194-43delTGGG
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: CCCCA
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-153230226-CCTCTCATT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230226
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230218
    reference: chr 0
allele count: 1
allele frequency: 1.376955276492619e-5
allele num: 72624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: CCTCTCATT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-153230227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230227
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230227
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 72771
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-50G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-50G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-50G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-153230229-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153230229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153230229
    reference: chr 0
allele count: 4
allele frequency: 5.514047034821207e-5
allele num: 72542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.194-52G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.194-52G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.194-52G>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

X-153236059-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236059
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236059
    reference: chr 0
allele count: 1
allele frequency: 1.455964357992516e-5
allele num: 68683
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+40C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+40C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+40C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-153236062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236062
    reference: chr 0
allele count: 1
allele frequency: 1.448100092678406e-5
allele num: 69056
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+37C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+37C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+37C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

X-153236063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236063
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236063
    reference: chr 0
allele count: 3
allele frequency: 4.329566610382301e-5
allele num: 69291
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+36C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+36C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+36C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153236064-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236064
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236064
    reference: chr 0
allele count: 1
allele frequency: 1.43992627577468e-5
allele num: 69448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+35C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+35C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+35C>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13129
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-153236064-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236064
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236064
    reference: chr 0
allele count: 1
allele frequency: 1.43992627577468e-5
allele num: 69448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+35C>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+35C>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+35C>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
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site quality: QD

X-153236072-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236072
    reference: chr 0
allele count: 1
allele frequency: 1.41334765525624e-5
allele num: 70754
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+27G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+27G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+27G>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

X-153236073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236073
    reference: chr 0
allele count: 1
allele frequency: 1.403193668790166e-5
allele num: 71266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+26C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+26C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+26C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-153236076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236076
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236076
    reference: chr 0
allele count: 2
allele frequency: 2.774117483875442e-5
allele num: 72095
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+23C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+23C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+23C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-153236077-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236077
    reference: chr 0
allele count: 1
allele frequency: 1.382456625423377e-5
allele num: 72335
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+22T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+22T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+22T>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12868
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-153236083-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236083
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236083
    reference: chr 0
allele count: 1
allele frequency: 1.351150504654714e-5
allele num: 74011
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+16G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+16G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+16G>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-153236083-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236083
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236084
    reference: chr 0
allele count: 2
allele frequency: 2.702301009309427e-5
allele num: 74011
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+15dupC
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+15dupC
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+15dupC
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 184
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  variant carriers: 2
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-153236084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236084
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 74603
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+15C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+15C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+15C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

X-153236092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236092
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236092
    reference: chr 0
allele count: 1
allele frequency: 1.297016861219196e-5
allele num: 77100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.193+7G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.193+7G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.193+7G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
hgvs: c.193+7G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-153236103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236103
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236103
    reference: chr 0
allele count: 1
allele frequency: 1.244849435460781e-5
allele num: 80331
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.189C>T
  hgvsp: ENST00000354233.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.189C>T
  hgvsp: ENST00000310441.7:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.189C>T
  hgvsp: ENST00000369984.4:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 25
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn63Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

X-153236112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236112
    reference: chr 0
allele count: 1
allele frequency: 1.221001221001221e-5
allele num: 81900
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.180C>T
  hgvsp: ENST00000310441.7:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.180C>T
  hgvsp: ENST00000369984.4:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.180C>T
  hgvsp: ENST00000354233.3:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4268
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  variant carriers: 0
hgvs: p.His60His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

X-153236154-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236154
    reference: chr 0
allele count: 1
allele frequency: 1.200235246108237e-5
allele num: 83317
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.138G>C
  hgvsp: ENST00000369984.4:c.138G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.138G>C
  hgvsp: ENST00000354233.3:c.138G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.138G>C
  hgvsp: ENST00000310441.7:c.138G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 183
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
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  variant carriers: 0
hgvs: p.Val46Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-153236157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236157
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236157
    reference: chr 0
allele count: 1
allele frequency: 1.203354953610667e-5
allele num: 83101
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.135C>T
  hgvsp: ENST00000354233.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.135C>T
  hgvsp: ENST00000310441.7:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.135C>T
  hgvsp: ENST00000369984.4:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 4305
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 44
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genotype quality: GenotypeQuality
  all individuals: 758
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ile45Ile
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

X-153236169-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236169
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236169
    reference: chr 0
allele count: 2
allele frequency: 2.460266692909511e-5
allele num: 81292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.123C>T
  hgvsp: ENST00000354233.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.123C>T
  hgvsp: ENST00000369984.4:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.123C>T
  hgvsp: ENST00000310441.7:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42067
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  variant carriers: 0
hgvs: p.Ile41Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

X-153236194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236194
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236194
    reference: chr 0
allele count: 1
allele frequency: 1.397448259478193e-5
allele num: 71559
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.98G>A
  hgvsp: ENSP00000309555.7:p.Arg33His
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.98G>A
  hgvsp: ENSP00000359001.4:p.Arg33His
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.98G>A
  hgvsp: ENSP00000346174.3:p.Arg33His
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1587
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  variant carriers: 0
hgvs: p.Arg33His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-153236253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236253
    reference: chr 0
allele count: 1
allele frequency: 2.644523192468398e-5
allele num: 37814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.39G>A
  hgvsp: ENST00000310441.7:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.39G>A
  hgvsp: ENST00000354233.3:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.39G>A
  hgvsp: ENST00000369984.4:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13457
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val13Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

X-153236280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236280
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236280
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16727
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.12C>T
  hgvsp: ENST00000354233.3:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.12C>T
  hgvsp: ENST00000369984.4:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.12C>T
  hgvsp: ENST00000310441.7:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala4Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

X-153236284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236284
    reference: chr 0
allele count: 1
allele frequency: 6.871907641561298e-5
allele num: 14552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.8C>T
  hgvsp: ENSP00000359001.4:p.Ser3Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.8C>T
  hgvsp: ENSP00000346174.3:p.Ser3Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.8C>T
  hgvsp: ENSP00000309555.7:p.Ser3Leu
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 152
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  variant carriers: 0
hgvs: p.Ser3Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

X-153236286-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236286
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236286
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15806
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.6T>G
  hgvsp: ENST00000310441.7:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.6T>G
  hgvsp: ENST00000369984.4:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.6T>G
  hgvsp: ENST00000354233.3:c.6T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Ala2Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-153236296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236296
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236296
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-5G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-5G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-5G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-153236299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236299
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236299
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-8C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-8C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-8C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153236310-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236310
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236310
    reference: chr 0
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-19C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-19C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-19C>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

X-153236314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236314
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-23C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-23C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-23C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

X-153236316-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236316
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236316
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9592
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-25C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-25C>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-25C>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

X-153236317-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236317
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236317
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-26T>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-26T>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-26T>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
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X-153236322-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236322
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236322
    reference: chr 0
allele count: 1
allele frequency: 1.137009664582149e-4
allele num: 8795
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-31A>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-31A>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-31A>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

X-153236323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153236323
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153236323
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8647
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.-32G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.-32G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.-32G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-153246645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153246645
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153246645
    reference: chr 0
allele count: 1
allele frequency: 6.934812760055479e-4
allele num: 1442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-213-656G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-213-656G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-214+571G>A
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
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site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
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site quality: QD

X-153246664-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153246664
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153246664
    reference: chr 0
allele count: 77
allele frequency: 5.321354526606772e-2
allele num: 1447
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-214+590G>C
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-213-637G>C
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-213-637G>C
  variant of: http://identifiers.org/hgnc/13705
canonical: true
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 9.75e1
  variant carriers: 65
num of homozygotes: 4
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-153247468-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247468
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247468
    reference: chr 0
allele count: 1
allele frequency: 1.183011948420679e-5
allele num: 84530
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-46G>C
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-46G>C
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-46G>C
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-153247487-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247487
    reference: chr 0
allele count: 1
allele frequency: 1.178772661904425e-5
allele num: 84834
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-27T>C
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 169
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

X-153247493-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247493
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247493
    reference: chr 0
allele count: 1
allele frequency: 1.176913661613784e-5
allele num: 84968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-21A>G
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-21A>G
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-21A>G
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153247500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247500
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247500
    reference: chr 0
allele count: 8
allele frequency: 9.388679599572815e-5
allele num: 85209
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-14G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

X-153247503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247503
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247503
    reference: chr 0
allele count: 16
allele frequency: 1.874458164436843e-4
allele num: 85358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-11G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-11G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-11G>A
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 189
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29104
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

X-153247503-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247503
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247503
    reference: chr 0
allele count: 2
allele frequency: 2.343072705546053e-5
allele num: 85358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-11G>T
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-11G>T
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-11G>T
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

X-153247505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247505
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247505
    reference: chr 0
allele count: 3
allele frequency: 3.512058066026691e-5
allele num: 85420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-9C>T
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-153247506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247506
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247506
    reference: chr 0
allele count: 16
allele frequency: 1.871366916572124e-4
allele num: 85499
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.-8G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.-8G>A
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.-8G>A
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

X-153247522-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247522
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247522
    reference: chr 0
allele count: 2
allele frequency: 2.327042561608452e-5
allele num: 85946
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.9A>G
  hgvsp: ENST00000369982.4:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.9A>G
  hgvsp: ENST00000425274.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.9A>G
  hgvsp: ENST00000431598.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10175
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6436
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro3Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-153247527-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153247527
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153247527
    reference: chr 0
allele count: 9
allele frequency: 1.045563326285462e-4
allele num: 86078
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000358999
  ensembl transcript: ENST00000369982
  gene symbol: TMEM187
  hgvsc: ENST00000369982.4:c.14G>C
  hgvsp: ENSP00000358999.4:p.Trp5Ser
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000390108
  ensembl transcript: ENST00000425274
  gene symbol: TMEM187
  hgvsc: ENST00000425274.1:c.14G>C
  hgvsp: ENSP00000390108.1:p.Trp5Ser
  variant of: http://identifiers.org/hgnc/13705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000177854
  ensembl protein: ENSP00000412872
  ensembl transcript: ENST00000431598
  gene symbol: TMEM187
  hgvsc: ENST00000431598.1:c.14G>C
  hgvsp: ENSP00000412872.1:p.Trp5Ser
  variant of: http://identifiers.org/hgnc/13705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Trp5Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

African
type: Population
allele count: 408
allele frequency: 5.24893863373215e-2
allele num: 7773
num of homozygotes: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 3.566796368352788e-3
allele num: 9252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.519896550974725e-5
allele num: 46013
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.191e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.844e0

VQSLOD
type: SiteQuality
SIO_000300: 7.69e0

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.838e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.68694e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.174243906681451e-5
allele num: 45993
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7773
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.846e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.680847e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.893e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

GenotypeQuality
all individuals: 2930
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.174669450243563e-5
allele num: 45984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7775
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

DP
type: SiteQuality
SIO_000300: 1.680567e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.029e0

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.086e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

GenotypeQuality
all individuals: 6261
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.080964220084315e-4
allele num: 9251
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.432522835456066e-4
allele num: 7773
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.658570558022112e-4
allele num: 45948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

QD
type: SiteQuality
SIO_000300: 2.098e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.87e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

DP
type: SiteQuality
SIO_000300: 1.681442e6

FS
type: SiteQuality
SIO_000300: 1.752e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.411e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.179029024666609e-5
allele num: 45892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.324324324324324e-4
allele num: 9250
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.199040767386091e-3
allele num: 5838
num of homozygotes: 0

African
type: Population
allele count: 191
allele frequency: 2.460389024861523e-2
allele num: 7763
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.533977603926983e-4
allele num: 6519
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.681e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.178e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

DP
type: SiteQuality
SIO_000300: 1.689986e6

GenotypeQuality
all individuals: 32753
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7823
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.152667154604555e-5
allele num: 46454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.295e0

QD
type: SiteQuality
SIO_000300: 3.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.198e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e0

DP
type: SiteQuality
SIO_000300: 1.706121e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 2056
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7831
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.452306699645123e-5
allele num: 46495
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 1.778e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.45e-1

DP
type: SiteQuality
SIO_000300: 1.708064e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.029e0

GenotypeQuality
all individuals: 3048
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7831
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.604185936458086e-5
allele num: 46489
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.528e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.358e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 1.708641e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.35e-1

GenotypeQuality
all individuals: 342
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07828337287039e-4
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46489
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7831
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.708641e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.148643131862229e-5
allele num: 46541
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 569
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East Asian
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allele frequency: 6.080875646093037e-4
allele num: 6578
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.144634125418203e-5
allele num: 46628
num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
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QD
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.144404177299337e-5
allele num: 46633
num of homozygotes: 0

East Asian
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MQ
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QD
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

Latino
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allele frequency: 3.229278794402583e-4
allele num: 9290
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46978
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African
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allele frequency: 1.269680040629761e-4
allele num: 7876
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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DP
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SIO_000300: 1.727968e6

MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
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allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele frequency: 1.075962986873252e-4
allele num: 9294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.117746717492588e-5
allele num: 47220
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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DP
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VQSLOD
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 8951
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.099693444757066e-5
allele num: 47626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.649e0

QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 1.263104711380573e-4
allele num: 7917
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47694
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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DP
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 1.048613732645443e-4
allele num: 47682
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7916
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South Asian
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allele count: 4
allele frequency: 4.344048653344917e-4
allele num: 9208
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

QD
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ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.098371663589055e-5
allele num: 47656
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 2.528445006321112e-4
allele num: 7910
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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East Asian
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FS
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ClippingRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
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Latino
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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QD
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Latino
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allele frequency: 2.14938205265986e-4
allele num: 9305
num of homozygotes: 0

DP
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Latino
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allele frequency: 1.182160128962923e-3
allele num: 9305
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European (Finnish)
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European (Non-Finnish)
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Other
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allele frequency: 0.0e0
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South Asian
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East Asian
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num of homozygotes: 0

QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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South Asian
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European (Non-Finnish)
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.647e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.344e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 9.045999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

DP
type: SiteQuality
SIO_000300: 1.705451e6

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7717
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6715
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4289
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.558667278808946e-5
allele num: 45741
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6491
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.222e1

DP
type: SiteQuality
SIO_000300: 1.59525e6

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

FS
type: SiteQuality
SIO_000300: 5.969e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6491
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.186222426269649e-5
allele num: 45741
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7717
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6715
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4289
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 5.969e0

QD
type: SiteQuality
SIO_000300: 2.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 1.59525e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.305312622373058e-4
allele num: 7661
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6407
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.988e0

DP
type: SiteQuality
SIO_000300: 1.532728e6

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.126760563380282e-4
allele num: 8875
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43841
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6299
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

VQSLOD
type: SiteQuality
SIO_000300: -1.398e0

DP
type: SiteQuality
SIO_000300: 1.32115e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 3.065e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3951
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6261
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.602305475504323e-4
allele num: 5552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.265e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.288126e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8823
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3947
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 2.079334612923864e-3
allele num: 6252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7481
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

DP
type: SiteQuality
SIO_000300: 1.284913e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.584e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43257
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3903
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8795
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.523e0

QD
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

FS
type: SiteQuality
SIO_000300: 6.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.032e0

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

DP
type: SiteQuality
SIO_000300: 1.257983e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42663
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.702e1

VQSLOD
type: SiteQuality
SIO_000300: -5.261e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.905e0

DP
type: SiteQuality
SIO_000300: 1.230399e6

QD
type: SiteQuality
SIO_000300: 3.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

FS
type: SiteQuality
SIO_000300: 5.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.953e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.125e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.406970586819429e-5
allele num: 41546
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.208e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.189661e6

MQRankSum
type: SiteQuality
SIO_000300: -1.214e0

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8539
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5159
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7250
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41619
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 2.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.394e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.188906e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7241
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 9.637393085170462e-5
allele num: 41505
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.187789e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.727e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.821e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6665
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2981
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.676444610978776e-5
allele num: 37363
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.93719e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.44e-2

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.722e1

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.661485641284965e-5
allele num: 37573
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 3015
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.012847e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.955027577428935e-5
allele num: 37712
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European (Finnish)
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

African
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East Asian
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Latino
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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FS
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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East Asian
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African
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South Asian
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Latino
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Other
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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FS
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 2.591143471614023e-5
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South Asian
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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MQ
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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South Asian
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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Latino
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European (Finnish)
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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African
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QD
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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FS
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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South Asian
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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East Asian
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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East Asian
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Other
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African
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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QD
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DP
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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GenotypeQuality
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Other
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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African
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East Asian
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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MQRankSum
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DP
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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MQRankSum
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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Other
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European (Finnish)
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South Asian
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East Asian
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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MQRankSum
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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European (Finnish)
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Other
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DP
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FS
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6403
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.843e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.802e-1

DP
type: SiteQuality
SIO_000300: 1.368196e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.464485021652752e-5
allele num: 44798
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8887
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3811
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

QD
type: SiteQuality
SIO_000300: 1.467e1

DP
type: SiteQuality
SIO_000300: 1.313339e6

VQSLOD
type: SiteQuality
SIO_000300: -7.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.99e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38763
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8879
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.494321578003586e-4
allele num: 6692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 503
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.121426e6

FS
type: SiteQuality
SIO_000300: 7.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.26e0

VQSLOD
type: SiteQuality
SIO_000300: -2.548e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.485e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

QD
type: SiteQuality
SIO_000300: 6.19e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19639
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1461
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.609787508048938e-4
allele num: 6212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3787
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.424e0

QD
type: SiteQuality
SIO_000300: 6.66e0

VQSLOD
type: SiteQuality
SIO_000300: -2.991e0

DP
type: SiteQuality
SIO_000300: 5.94382e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.281e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4125
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 137
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 335
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1157
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.815e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.89e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.73795e5

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 797
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7361
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1317
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.17096018735363e-3
allele num: 854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 123
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.84e-2

FS
type: SiteQuality
SIO_000300: 2.25232e2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.289e2

ClippingRankSum
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SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 3.57176e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 359
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 135
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.61778e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.487e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6989
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 119
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1393
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 255
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.55e-2

QD
type: SiteQuality
SIO_000300: 1.632e1

VQSLOD
type: SiteQuality
SIO_000300: -2.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.26493e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3297
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 121
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6662
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1346
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.012e0

DP
type: SiteQuality
SIO_000300: 3.12829e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 6.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.77e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1147
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
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allele frequency: 3.64963503649635e-4
allele num: 2740
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 103
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 2.68334e5

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.489999999999999e-2

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.62e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5043
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -7.630000000000001e-2

DP
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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DP
type: SiteQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4809
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 329
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele num: 100
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 2283
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.532888465204957e-4
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 4453
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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DP
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 355
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 83
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.2021e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.02e-2

QD
type: SiteQuality
SIO_000300: 9.02e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 83
num of homozygotes: 0

African
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allele count: 75
allele frequency: 2.083333333333333e-1
allele num: 360
num of homozygotes: 4

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.219512195121951e-2
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.142857142857142e-2
allele num: 14
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 1.503e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.5641e4

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.38e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6543
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4284
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.167598734122339e-5
allele num: 46134
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9189
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9925
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 3.854e0

DP
type: SiteQuality
SIO_000300: 1.66003e6

QD
type: SiteQuality
SIO_000300: 2.147e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.025e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4309
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.004924128228319e-4
allele num: 9951
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46312
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.713354e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.978e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46385
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7922
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9965
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East Asian
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allele count: 1
allele frequency: 1.523925632429137e-4
allele num: 6562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4323
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.8e0

DP
type: SiteQuality
SIO_000300: 1.730383e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.116e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: -2.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7971
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.511829824180595e-4
allele num: 9214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.003405789842733e-4
allele num: 9983
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
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MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

QD
type: SiteQuality
SIO_000300: 1.677e1

DP
type: SiteQuality
SIO_000300: 1.744023e6

FS
type: SiteQuality
SIO_000300: 2.042e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 948
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

African
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allele count: 13
allele frequency: 1.623782163377467e-3
allele num: 8006
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.168256721595837e-4
allele num: 9224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.145416318036515e-5
allele num: 46611
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.49e-2

QD
type: SiteQuality
SIO_000300: 1.652e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.753653e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.084128360797918e-4
allele num: 9224
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.145416318036515e-5
allele num: 46611
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.652e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.753653e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46636
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4362
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South Asian
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African
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East Asian
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allele frequency: 1.522301720200944e-4
allele num: 6569
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.166377816291161e-4
allele num: 9232
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Other
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.338e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.759023e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.142199181679913e-5
allele num: 46681
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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African
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allele count: 12
allele frequency: 1.49123897104511e-3
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Latino
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allele count: 3
allele frequency: 3.2481593763534e-4
allele num: 9236
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VQSLOD
type: SiteQuality
SIO_000300: -7.56e-2

DP
type: SiteQuality
SIO_000300: 1.762618e6

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.266484629989121e-5
allele num: 46877
num of homozygotes: 0

South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 613
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MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.779624e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

ClippingRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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