20-1592165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592165
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592165
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 66648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.271A>G
  hgvsp: ENSP00000456826.1:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8350A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.313A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8350A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.45A>G
  hgvsp: ENSP00000457551.2:p.Thr16Ala
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8350A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8350A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.271A>G
  hgvsp: ENSP00000279477.7:p.Thr91Ala
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11957
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr16Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

20-1592172-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592172
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592172
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 66332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8343G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.38G>A
  hgvsp: ENST00000566961.2:c.38G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8343G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.264G>A
  hgvsp: ENST00000568365.1:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8343G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.264G>A
  hgvsp: ENST00000279477.7:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8343G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.306G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg13Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/20-1592173-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592173
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592173
    reference: chr 20
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8342G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.305G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8342G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8342G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.263G>T
  hgvsp: ENSP00000456826.1:p.Arg88Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8342G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.37G>T
  hgvsp: ENSP00000457551.2:p.Arg13Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.263G>T
  hgvsp: ENSP00000279477.7:p.Arg88Leu
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg13Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

20-1592173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592173
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592173
    reference: chr 20
allele count: 3
allele frequency: 4.52502337928746e-5
allele num: 66298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.37G>A
  hgvsp: ENSP00000457551.2:p.Arg13Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.263G>A
  hgvsp: ENSP00000279477.7:p.Arg88Gln
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8342G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.305G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8342G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8342G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.263G>A
  hgvsp: ENSP00000456826.1:p.Arg88Gln
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8342G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg13Gln
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

20-1592174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592174
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592174
    reference: chr 20
allele count: 10
allele frequency: 1.509479531457553e-4
allele num: 66248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.36C>T
  hgvsp: ENSP00000457551.2:p.Arg13Trp
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.304C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8341C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.262C>T
  hgvsp: ENSP00000279477.7:p.Arg88Trp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8341C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8341C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.262C>T
  hgvsp: ENSP00000456826.1:p.Arg88Trp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8341C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6484
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg13Trp
num of homozygotes: 3
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

20-1592175-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592175
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592175
    reference: chr 20
allele count: 1
allele frequency: 1.574604774201676e-5
allele num: 63508
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8340A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.261A>G
  hgvsp: ENST00000279477.7:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.261A>G
  hgvsp: ENST00000568365.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8340A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.303A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8340A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8340A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.35A>G
  hgvsp: ENST00000566961.2:c.35A>G(p.%3D)
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7415
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11747
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro12Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

20-1592175-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592175
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592175
    reference: chr 20
allele count: 5378
allele frequency: 8.468224475656611e-2
allele num: 63508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.303A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8340A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8340A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.261A>C
  hgvsp: ENST00000279477.7:c.261A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8340A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8340A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.35A>C
  hgvsp: ENST00000566961.2:c.35A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.261A>C
  hgvsp: ENST00000568365.1:c.261A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 843
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 9.75e1
  variant carriers: 584
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.5e0
  variant carriers: 5506
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 7.5e0
  variant carriers: 5035
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 2.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.25e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 356
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 1.75e1
  variant carriers: 2585
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 9.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.25e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 2.5e0
  variant carriers: 249
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.25e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 442
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 599
hgvs: p.Pro12Pro
num of homozygotes: 1057
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

20-1592179-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592179
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592179
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 65802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.257T>C
  hgvsp: ENSP00000456826.1:p.Phe86Ser
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8336T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8336T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.299T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8336T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.257T>C
  hgvsp: ENSP00000279477.7:p.Phe86Ser
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.31T>C
  hgvsp: ENSP00000457551.2:p.Phe11Ser
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8336T>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9900
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8265
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe11Ser
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

20-1592182-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592182
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592182
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 65766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.254A>T
  hgvsp: ENSP00000456826.1:p.His85Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8333A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.296A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.254A>T
  hgvsp: ENSP00000279477.7:p.His85Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8333A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8333A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8333A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.28A>T
  hgvsp: ENSP00000457551.2:p.His10Leu
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His10Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

20-1592185-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592185
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592185
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 65828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.293G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8330G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.251G>C
  hgvsp: ENSP00000456826.1:p.Gly84Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8330G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8330G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.25G>C
  hgvsp: ENSP00000457551.2:p.Gly9Ala
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.251G>C
  hgvsp: ENSP00000279477.7:p.Gly84Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8330G>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9496
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly9Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

20-1592185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592185
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592185
    reference: chr 20
allele count: 1
allele frequency: 1.519110408944522e-5
allele num: 65828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.293G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.251G>A
  hgvsp: ENSP00000456826.1:p.Gly84Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8330G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.251G>A
  hgvsp: ENSP00000279477.7:p.Gly84Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8330G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8330G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.25G>A
  hgvsp: ENSP00000457551.2:p.Gly9Asp
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8330G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9496
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8558
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly9Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-1592186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592186
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592186
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 65796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.24G>A
  hgvsp: ENSP00000457551.2:p.Gly9Ser
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8329G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8329G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8329G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.250G>A
  hgvsp: ENSP00000456826.1:p.Gly84Ser
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.250G>A
  hgvsp: ENSP00000279477.7:p.Gly84Ser
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8329G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.292G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8453
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly9Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

20-1592187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592187
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592187
    reference: chr 20
allele count: 13
allele frequency: 1.975743943584912e-4
allele num: 65798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.291A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8328A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8328A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.249A>G
  hgvsp: ENST00000279477.7:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8328A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8328A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.249A>G
  hgvsp: ENST00000568365.1:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.23A>G
  hgvsp: ENST00000566961.2:c.23A>G(p.%3D)
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu8Glu
num of homozygotes: 6
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/20-1592189-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592189
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592189
    reference: chr 20
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.247G>T
  hgvsp: ENSP00000456826.1:p.Glu83Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.289G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.21G>T
  hgvsp: ENSP00000457551.2:p.Glu8Ter
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8326G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.247G>T
  hgvsp: ENSP00000279477.7:p.Glu83Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8326G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8326G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8326G>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu8Ter
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

20-1592193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592193
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592193
    reference: chr 20
allele count: 7321
allele frequency: 1.144013501265744e-1
allele num: 63994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.243G>A
  hgvsp: ENST00000568365.1:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.285G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8322G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.17G>A
  hgvsp: ENST00000566961.2:c.17G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.243G>A
  hgvsp: ENST00000279477.7:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8322G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8322G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8322G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 4.25e1
  variant carriers: 494
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 2.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 530
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 2.5e0
  variant carriers: 5146
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 3.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 1052
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 3.75e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 7.5e0
  variant carriers: 5424
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 865
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.75e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 6.75e1
  variant carriers: 315
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 1.75e1
  variant carriers: 2710
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 4.75e1
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 8536
  bin: 9.75e1
  variant carriers: 3829
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 6.75e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.5e0
  variant carriers: 322
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 1.25e1
  variant carriers: 2006
hgvs: p.Gln6Gln
num of homozygotes: 1371
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

20-1592199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592199
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592199
    reference: chr 20
allele count: 1
allele frequency: 1.494098311668908e-5
allele num: 66930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8316C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8316C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.237C>T
  hgvsp: ENST00000568365.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8316C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8316C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.237C>T
  hgvsp: ENST00000279477.7:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.11C>T
  hgvsp: ENST00000566961.2:c.11C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.279C>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr4Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

20-1592203-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592203
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592203
    reference: chr 20
allele count: 1
allele frequency: 1.493027561288781e-5
allele num: 66978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8312T>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.7T>A
  hgvsp: ENSP00000457551.2:p.Ile3Asn
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.275T>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8312T>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.233T>A
  hgvsp: ENSP00000279477.7:p.Ile78Asn
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8312T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.233T>A
  hgvsp: ENSP00000456826.1:p.Ile78Asn
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8312T>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile3Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

20-1592205-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592205
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592205
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 67074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.5A>C
  hgvsp: ENSP00000457551.2:p.Leu2Phe
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.231A>C
  hgvsp: ENSP00000456826.1:p.Leu77Phe
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.273A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8310A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.231A>C
  hgvsp: ENSP00000279477.7:p.Leu77Phe
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8310A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8310A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8310A>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8910
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Leu2Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

20-1592207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592207
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592207
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 67356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.3T>C
  hgvsp: ENST00000566961.2:c.3T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8308T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.271T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.229T>C
  hgvsp: ENST00000279477.7:c.229T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8308T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8308T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8308T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.229T>C
  hgvsp: ENST00000568365.1:c.229T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4548
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10788
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu2Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

20-1592209-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592209
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592209
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 67520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457551
  ensembl transcript: ENST00000566961
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000566961.2:c.1A>C
  hgvsp: ENST00000566961.2:c.1A>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.227A>C
  hgvsp: ENSP00000279477.7:p.Glu76Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8306A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8306A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.269A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.227A>C
  hgvsp: ENSP00000456826.1:p.Glu76Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8306A>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8306A>C
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9405
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu76Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/20-1592210-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592210
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592210
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 67698
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8305G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8305G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8305G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.226G>T
  hgvsp: ENSP00000456826.1:p.Glu76Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.268G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8305G>T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.226G>T
  hgvsp: ENSP00000279477.7:p.Glu76Ter
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu76Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/20-1592211-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592211
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592211
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 67896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.267G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8304G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.225G>T
  hgvsp: ENST00000279477.7:c.225G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8304G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8304G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.225G>T
  hgvsp: ENST00000568365.1:c.225G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8304G>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11285
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg75Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-1592212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592212
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592212
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 68192
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8303G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.266G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8303G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.224G>A
  hgvsp: ENSP00000279477.7:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8303G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.224G>A
  hgvsp: ENSP00000456826.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8303G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Arg75Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

20-1592213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592213
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592213
    reference: chr 20
allele count: 2
allele frequency: 2.911716748194736e-5
allele num: 68688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8302C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8302C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.265C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.223C>T
  hgvsp: ENSP00000456826.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.223C>T
  hgvsp: ENSP00000279477.7:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8302C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8302C>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7667
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg75Trp
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

20-1592215-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592215
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592215
    reference: chr 20
allele count: 25749
allele frequency: 3.705851875305834e-1
allele num: 69482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.263G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8300G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8300G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.221G>C
  hgvsp: ENSP00000279477.7:p.Gly74Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8300G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.221G>C
  hgvsp: ENSP00000456826.1:p.Gly74Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8300G>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 3.75e1
  variant carriers: 1179
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 1.75e1
  variant carriers: 1884
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 6.75e1
  variant carriers: 675
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 4.75e1
  variant carriers: 1619
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 1.25e1
  variant carriers: 4373
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 2.5e0
  variant carriers: 1881
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 7.5e0
  variant carriers: 7023
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.25e1
  variant carriers: 1519
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 902
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 5.25e1
  variant carriers: 1430
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.75e1
  variant carriers: 428
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 2.25e1
  variant carriers: 847
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.25e1
  variant carriers: 950
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.75e1
  variant carriers: 1205
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 2.75e1
  variant carriers: 616
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 9.75e1
  variant carriers: 1998
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 6.75e1
  variant carriers: 463
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 1272
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.25e1
  variant carriers: 346
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 1.75e1
  variant carriers: 2959
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 5.75e1
  variant carriers: 552
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 2.25e1
  variant carriers: 2766
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 2.75e1
  variant carriers: 1386
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 3.25e1
  variant carriers: 2069
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 820
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 1087
hgvs: p.Gly74Ala
num of homozygotes: 6338
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

20-1592219-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592219
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592219
    reference: chr 20
allele count: 8
allele frequency: 1.00575796434588e-4
allele num: 79542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.259C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8296C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8296C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.217C>G
  hgvsp: ENSP00000456826.1:p.Pro73Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8296C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.217C>G
  hgvsp: ENSP00000279477.7:p.Pro73Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8296C>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9348
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro73Ala
num of homozygotes: 1
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

20-1592220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592220
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592220
    reference: chr 20
allele count: 1
allele frequency: 1.256818238946284e-5
allele num: 79566
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.216A>G
  hgvsp: ENST00000568365.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8295A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.258A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8295A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.216A>G
  hgvsp: ENST00000279477.7:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8295A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8295A>G
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15407
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly72Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

20-1592226-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592226
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592226
    reference: chr 20
allele count: 2
allele frequency: 2.507522567703109e-5
allele num: 79760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8289A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8289A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8289A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.210A>G
  hgvsp: ENST00000279477.7:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.210A>G
  hgvsp: ENST00000568365.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.252A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8289A>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly70Gly
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

20-1592229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592229
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592229
    reference: chr 20
allele count: 1
allele frequency: 1.252065908749437e-5
allele num: 79868
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8286A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8286A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.207A>G
  hgvsp: ENST00000279477.7:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.249A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8286A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.207A>G
  hgvsp: ENST00000568365.1:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8286A>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15412
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg69Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-1592230-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592230
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592230
    reference: chr 20
allele count: 2
allele frequency: 2.5040691123075e-5
allele num: 79870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.206G>C
  hgvsp: ENSP00000279477.7:p.Arg69Thr
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8285G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.206G>C
  hgvsp: ENSP00000456826.1:p.Arg69Thr
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8285G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.248G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8285G>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8285G>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11000
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg69Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

20-1592236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592236
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592236
    reference: chr 20
allele count: 1
allele frequency: 1.243657347527609e-5
allele num: 80408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8279G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.200G>A
  hgvsp: ENSP00000456826.1:p.Trp67Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.200G>A
  hgvsp: ENSP00000279477.7:p.Trp67Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8279G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8279G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.242G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8279G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp67Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

20-1592245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592245
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592245
    reference: chr 20
allele count: 2
allele frequency: 2.453445864716995e-5
allele num: 81518
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8270C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8270C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8270C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8270C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.191C>T
  hgvsp: ENSP00000279477.7:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.191C>T
  hgvsp: ENSP00000456826.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.233C>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro64Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-1592253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592253
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592253
    reference: chr 20
allele count: 1
allele frequency: 1.203861989261551e-5
allele num: 83066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8262T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8262T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.225T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.183T>C
  hgvsp: ENST00000568365.1:c.183T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8262T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.183T>C
  hgvsp: ENST00000279477.7:c.183T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8262T>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro61Pro
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

20-1592254-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592254
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592254
    reference: chr 20
allele count: 1
allele frequency: 1.200566667467044e-5
allele num: 83294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8261C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8261C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.182C>A
  hgvsp: ENSP00000456826.1:p.Pro61His
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.182C>A
  hgvsp: ENSP00000279477.7:p.Pro61His
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8261C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.224C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8261C>A
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7838
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro61His
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

20-1592255-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592255
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592255
    reference: chr 20
allele count: 84
allele frequency: 1.006204930404159e-3
allele num: 83482
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8260C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.223C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.181C>G
  hgvsp: ENSP00000279477.7:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.181C>G
  hgvsp: ENSP00000456826.1:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8260C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8260C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8260C>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro61Ala
num of homozygotes: 18
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

20-1592258-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592258
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592258
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 83936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.178A>T
  hgvsp: ENSP00000279477.7:p.Ile60Phe
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.178A>T
  hgvsp: ENSP00000456826.1:p.Ile60Phe
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8257A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.220A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8257A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8257A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8257A>T
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15452
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7675
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile60Phe
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

20-1592259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592259
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592259
    reference: chr 20
allele count: 14
allele frequency: 1.664843266898159e-4
allele num: 84092
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8256G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8256G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.177G>A
  hgvsp: ENST00000568365.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8256G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.177G>A
  hgvsp: ENST00000279477.7:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8256G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.219G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15456
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu59Leu
num of homozygotes: 4
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

20-1592269-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592269
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592269
    reference: chr 20
allele count: 1
allele frequency: 1.032759119263023e-5
allele num: 96828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.167T>C
  hgvsp: ENSP00000456826.1:p.Val56Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.209T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8246T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8246T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.167T>C
  hgvsp: ENSP00000279477.7:p.Val56Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8246T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8246T>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val56Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

20-1592271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592271
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592271
    reference: chr 20
allele count: 16
allele frequency: 1.653370809738354e-4
allele num: 96772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.165T>C
  hgvsp: ENST00000279477.7:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.165T>C
  hgvsp: ENST00000568365.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8244T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8244T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.207T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8244T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8244T>C
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17254
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Thr55Thr
num of homozygotes: 3
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-1592278-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592278
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592278
    reference: chr 20
allele count: 7
allele frequency: 7.245026806599185e-5
allele num: 96618
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8237A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.158A>G
  hgvsp: ENSP00000456826.1:p.His53Arg
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8237A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8237A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.200A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.158A>G
  hgvsp: ENSP00000279477.7:p.His53Arg
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8237A>G
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8750
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His53Arg
num of homozygotes: 1
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

20-1592283-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592283
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592283
    reference: chr 20
allele count: 1
allele frequency: 1.039717196922437e-5
allele num: 96180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.153T>C
  hgvsp: ENST00000568365.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.153T>C
  hgvsp: ENST00000279477.7:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8232T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8232T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8232T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.195T>C
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8232T>C
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr51Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

20-1592284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592284
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592284
    reference: chr 20
allele count: 52192
allele frequency: 5.52869642592318e-1
allele num: 94402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.152C>T
  hgvsp: ENSP00000279477.7:p.Thr51Ile
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.152C>T
  hgvsp: ENSP00000456826.1:p.Thr51Ile
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8231C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8231C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8231C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.194C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8231C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.75e1
  variant carriers: 706
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 9.75e1
  variant carriers: 2476
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.75e1
  variant carriers: 1707
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 2444
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.5e0
  variant carriers: 1082
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 1.75e1
  variant carriers: 4360
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 1.25e1
  variant carriers: 3380
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 3.75e1
  variant carriers: 2990
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 8.25e1
  variant carriers: 656
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 2.75e1
  variant carriers: 2939
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.25e1
  variant carriers: 913
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 3561
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.25e1
  variant carriers: 2977
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 6.25e1
  variant carriers: 1385
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 6.75e1
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 4.25e1
  variant carriers: 2761
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 5.25e1
  variant carriers: 2097
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.5e0
  variant carriers: 262
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 858
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.75e1
  variant carriers: 396
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 2.25e1
  variant carriers: 653
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 7.5e0
  variant carriers: 332
genotype quality: GenotypeQuality
  all individuals: 5675
  bin: 6.25e1
  variant carriers: 1279
genotype quality: GenotypeQuality
  all individuals: 24206
  bin: 9.75e1
  variant carriers: 23401
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.25e1
  variant carriers: 296
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 1086
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 9.25e1
  variant carriers: 592
hgvs: p.Thr51Ile
num of homozygotes: 15754
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

20-1592285-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592285
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592285
    reference: chr 20
allele count: 2
allele frequency: 2.249111600917637e-5
allele num: 88924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.151A>G
  hgvsp: ENSP00000456826.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.151A>G
  hgvsp: ENSP00000279477.7:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.193A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8230A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8230A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8230A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8230A>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10602
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr51Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

20-1592289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592289
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592289
    reference: chr 20
allele count: 3
allele frequency: 3.398278205709107e-5
allele num: 88280
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8226G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8226G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8226G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.147G>A
  hgvsp: ENST00000279477.7:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.147G>A
  hgvsp: ENST00000568365.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.189G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8226G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10598
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser49Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

20-1592290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592290
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592290
    reference: chr 20
allele count: 2
allele frequency: 2.269220295906326e-5
allele num: 88136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8225C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8225C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.146C>T
  hgvsp: ENSP00000279477.7:p.Ser49Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.188C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8225C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.146C>T
  hgvsp: ENSP00000456826.1:p.Ser49Leu
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8225C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10598
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser49Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

20-1592291-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592291
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592291
    reference: chr 20
allele count: 1
allele frequency: 1.135976371691469e-5
allele num: 88030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8224T>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.145T>A
  hgvsp: ENSP00000456826.1:p.Ser49Thr
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.145T>A
  hgvsp: ENSP00000279477.7:p.Ser49Thr
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8224T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8224T>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8224T>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.187T>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9552
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser49Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/20-1592304-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592304
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592304
    reference: chr 20
allele count: 15
allele frequency: 1.777967427636726e-4
allele num: 84366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.174T>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.132T>G
  hgvsp: ENST00000279477.7:c.132T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8211T>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8211T>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.132T>G
  hgvsp: ENST00000568365.1:c.132T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8211T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8211T>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8034
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val44Val
num of homozygotes: 5
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

20-1592312-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592312
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592312
    reference: chr 20
allele count: 36790
allele frequency: 4.671746031746032e-1
allele num: 78750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.166A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8203A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.124A>G
  hgvsp: ENSP00000279477.7:p.Ile42Val
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.124A>G
  hgvsp: ENSP00000456826.1:p.Ile42Val
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8203A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8203A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8203A>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 4.75e1
  variant carriers: 1488
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 3.25e1
  variant carriers: 3047
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 2.75e1
  variant carriers: 3128
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 1157
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 7.5e0
  variant carriers: 6691
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 1.75e1
  variant carriers: 3226
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 1907
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 1.25e1
  variant carriers: 5348
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.5e0
  variant carriers: 1141
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 840
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 991
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.25e1
  variant carriers: 2857
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 3.75e1
  variant carriers: 2491
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.25e1
  variant carriers: 743
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 869
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.5e0
  variant carriers: 385
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 1179
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 1832
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 6.75e1
  variant carriers: 611
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 1251
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 1.75e1
  variant carriers: 2502
genotype quality: GenotypeQuality
  all individuals: 17304
  bin: 9.75e1
  variant carriers: 16362
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 917
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.25e1
  variant carriers: 396
hgvs: p.Ile42Val
num of homozygotes: 8808
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

20-1592313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592313
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592313
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 76050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8202C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.165C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8202C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8202C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.123C>T
  hgvsp: ENST00000279477.7:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.123C>T
  hgvsp: ENST00000568365.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8202C>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser41Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

20-1592321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592321
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592321
    reference: chr 20
allele count: 1
allele frequency: 1.40209192114635e-5
allele num: 71322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8194G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.115G>A
  hgvsp: ENSP00000279477.7:p.Asp39Asn
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8194G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8194G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.115G>A
  hgvsp: ENSP00000456826.1:p.Asp39Asn
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8194G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.157G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7011
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11020
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp39Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-1592336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592336
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592336
    reference: chr 20
allele count: 3
allele frequency: 4.830762294290039e-5
allele num: 62102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.142C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8179C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.100C>T
  hgvsp: ENSP00000279477.7:p.Gln34Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8179C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.100C>T
  hgvsp: ENSP00000456826.1:p.Gln34Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8179C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8179C>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln34Ter
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/20-1592340-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592340
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592340
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 61676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8175G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.138G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8175G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8175G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.96G>T
  hgvsp: ENSP00000456826.1:p.Glu32Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8175G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.96G>T
  hgvsp: ENSP00000279477.7:p.Glu32Asp
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu32Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

20-1592341-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592341
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592342
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 61692
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8173dupG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8173dupG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8173dupG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.94dupG
  hgvsp: ENSP00000456826.1:p.Glu32GlyfsTer8
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.94dupG
  hgvsp: ENSP00000279477.7:p.Glu32GlyfsTer8
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.136dupG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8173dupG
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu32GlyfsTer8
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-1592343-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592343
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592343
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 48530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.135A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.93A>T
  hgvsp: ENSP00000456826.1:p.Glu31Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.93A>T
  hgvsp: ENSP00000279477.7:p.Glu31Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8172A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8172A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8172A>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8172A>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu31Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

20-1592343-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592343
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592343
    reference: chr 20
allele count: 2703
allele frequency: 5.569750669688852e-2
allele num: 48530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8172A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.135A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.93A>G
  hgvsp: ENST00000279477.7:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8172A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8172A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.93A>G
  hgvsp: ENST00000568365.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8172A>G
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 1.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 1.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 2.25e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 1876
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.75e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.5e0
  variant carriers: 1898
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.25e1
  variant carriers: 441
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 7.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 5.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 899
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 2.5e0
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 1155
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 336
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.75e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.25e1
  variant carriers: 124
hgvs: p.Glu31Glu
num of homozygotes: 156
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

20-1592343-T-TGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592343
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 48530
alternate allele: TGC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8171_76+8172insGC
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.92_93insGC
  hgvsp: ENSP00000456826.1:p.Glu32GlnfsTer5
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8171_76+8172insGC
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.92_93insGC
  hgvsp: ENSP00000279477.7:p.Glu32GlnfsTer5
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8171_193+8172insGC
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8171_76+8172insGC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.134_135insGC
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: frameshift
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu32GlnfsTer5
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

20-1592344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592344
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592344
    reference: chr 20
allele count: 1
allele frequency: 1.632226683641824e-5
allele num: 61266
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8171A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.92A>G
  hgvsp: ENSP00000279477.7:p.Glu31Gly
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8171A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.92A>G
  hgvsp: ENSP00000456826.1:p.Glu31Gly
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8171A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.134A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8171A>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu31Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/20-1592345-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 61216
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 506
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6532
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4192
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2938
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/20-1592345-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592346
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 61216
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8169_193+8170insT
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.132_133insT
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8169_76+8170insT
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.90_91insT
  hgvsp: ENSP00000456826.1:p.Glu31Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8169_76+8170insT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.90_91insT
  hgvsp: ENSP00000279477.7:p.Glu31Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8169_76+8170insT
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9930
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu31Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

20-1592345-C-CCTCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
allele count: 5
allele frequency: 8.167799268165186e-5
allele num: 61216
alternate allele: CCTCA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.90_91insTGAG
  hgvsp: ENSP00000456826.1:p.Glu31Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8169_193+8170insTGAG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.132_133insTGAG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.90_91insTGAG
  hgvsp: ENSP00000279477.7:p.Glu31Ter
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8169_76+8170insTGAG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8169_76+8170insTGAG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8169_76+8170insTGAG
canonical: false
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu31Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

20-1592345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592345
    reference: chr 20
allele count: 2
allele frequency: 3.267119707266074e-5
allele num: 61216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.91G>A
  hgvsp: ENSP00000279477.7:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8170G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.91G>A
  hgvsp: ENSP00000456826.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8170G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.133G>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8170G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8170G>A
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu31Lys
num of homozygotes: 1
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/20-1592346-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592346
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592346
    reference: chr 20
allele count: 1
allele frequency: 1.633933531583935e-5
allele num: 61202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8169G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8169G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8169G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.90G>T
  hgvsp: ENSP00000456826.1:p.Glu30Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.132G>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.90G>T
  hgvsp: ENSP00000279477.7:p.Glu30Asp
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8169G>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu30Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

20-1592347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592347
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592347
    reference: chr 20
allele count: 1
allele frequency: 1.634360801490537e-5
allele num: 61186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8168A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.89A>G
  hgvsp: ENSP00000279477.7:p.Glu30Gly
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8168A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.89A>G
  hgvsp: ENSP00000456826.1:p.Glu30Gly
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8168A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8168A>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.131A>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Glu30Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

20-1592347-T-TCAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592347
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592351
    reference: chr 20
allele count: 4
allele frequency: 6.537443205962148e-5
allele num: 61186
alternate allele: TCAAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8167_76+8168insGTTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8167_76+8168insGTTG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.88_89insGTTG
  hgvsp: ENSP00000456826.1:p.Glu30GlyfsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8167_76+8168insGTTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.130_131insGTTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8167_193+8168insGTTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.88_89insGTTG
  hgvsp: ENSP00000279477.7:p.Glu30GlyfsTer2
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu30GlyfsTer2
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

20-1592347-T-TCACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592347
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592351
    reference: chr 20
allele count: 8
allele frequency: 1.30748864119243e-4
allele num: 61186
alternate allele: TCACA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.88_89insTGTG
  hgvsp: ENSP00000456826.1:p.Glu30ValfsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8167_76+8168insTGTG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.88_89insTGTG
  hgvsp: ENSP00000279477.7:p.Glu30ValfsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.130_131insTGTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8167_193+8168insTGTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8167_76+8168insTGTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8167_76+8168insTGTG
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 3
hgvs: p.Glu30ValfsTer2
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

20-1592347-T-TCACG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592347
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592351
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 61186
alternate allele: TCACG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8167_193+8168insCGTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.88_89insCGTG
  hgvsp: ENSP00000279477.7:p.Glu30AlafsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.88_89insCGTG
  hgvsp: ENSP00000456826.1:p.Glu30AlafsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8167_76+8168insCGTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.130_131insCGTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8167_76+8168insCGTG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8167_76+8168insCGTG
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu30AlafsTer2
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

20-1592347-T-TCATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592347
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592351
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 61186
alternate allele: TCATC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.88_89insGATG
  hgvsp: ENSP00000279477.7:p.Glu30GlyfsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.130_131insGATG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8167_193+8168insGATG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8167_76+8168insGATG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8167_76+8168insGATG
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.88_89insGATG
  hgvsp: ENSP00000456826.1:p.Glu30GlyfsTer2
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8167_76+8168insGATG
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: stop gained
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu30GlyfsTer2
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

20-1592348-CGCCAGCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592348
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592341
    reference: chr 20
allele count: 12
allele frequency: 1.965151316651382e-4
allele num: 61064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.81_87delAGCTGGC
  hgvsp: ENSP00000456826.1:p.Ala28ArgfsTer6
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.123_129delAGCTGGC
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.81_87delAGCTGGC
  hgvsp: ENSP00000279477.7:p.Ala28ArgfsTer6
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9607
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala28ArgfsTer6
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: CGCCAGCT
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-1592349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
allele count: 505
allele frequency: 8.501683501683501e-3
allele num: 59400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.87C>T
  hgvsp: ENST00000568365.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.129C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8166C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.87C>T
  hgvsp: ENST00000279477.7:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8166C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8166C>T
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8166C>T
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.5e0
  variant carriers: 615
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 9.75e1
  variant carriers: 386
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 18
hgvs: p.Gly29Gly
num of homozygotes: 12
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

20-1592349-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
allele count: 102
allele frequency: 1.717171717171717e-3
allele num: 59400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8166C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.87C>G
  hgvsp: ENST00000279477.7:c.87C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8166C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.87C>G
  hgvsp: ENST00000568365.1:c.87C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8166C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.129C>G
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8166C>G
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.5e0
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 9.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.25e1
  variant carriers: 6
hgvs: p.Gly29Gly
num of homozygotes: 1
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

20-1592349-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592349
    reference: chr 20
allele count: 4
allele frequency: 6.734006734006734e-5
allele num: 59400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.87C>A
  hgvsp: ENST00000568365.1:c.87C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8166C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.87C>A
  hgvsp: ENST00000279477.7:c.87C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8166C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8166C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.129C>A
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8166C>A
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly29Gly
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/20-1592351-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1592351
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 1592350
    reference: chr 20
allele count: 2
allele frequency: 3.268187463232891e-5
allele num: 61196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000260861
  ensembl protein: ENSP00000457944
  ensembl transcript: ENST00000564763
  gene symbol: RP4-576H24.4
  hgvsc: ENST00000564763.1:c.76+8163delT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371018
  ensembl transcript: ENST00000381605
  gene symbol: SIRPB1
  hgvsc: ENST00000381605.4:c.76+8163delT
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000279477
  ensembl transcript: ENST00000279477
  gene symbol: SIRPB1
  hgvsc: ENST00000279477.7:c.84delT
  hgvsp: ENSP00000279477.7:p.Gly29AlafsTer7
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000565775
  gene symbol: SIRPB1
  hgvsc: ENST00000565775.1:n.193+8163delT
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000456826
  ensembl transcript: ENST00000568365
  gene symbol: SIRPB1
  hgvsc: ENST00000568365.1:c.84delT
  hgvsp: ENSP00000456826.1:p.Gly29AlafsTer7
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101307
  ensembl protein: ENSP00000371016
  ensembl transcript: ENST00000381603
  gene symbol: SIRPB1
  hgvsc: ENST00000381603.3:c.76+8163delT
  variant of: http://identifiers.org/hgnc/15928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000101307
  ensembl transcript: ENST00000381596
  gene symbol: SIRPB1
  hgvsc: ENST00000381596.1:n.126delT
  variant of: http://identifiers.org/hgnc/15928
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly29AlafsTer7
num of homozygotes: 0
reference allele: CA

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10305
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1042
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.447665e6

VQSLOD
type: SiteQuality
SIO_000300: -1.975e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6780
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10303
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.748e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.732e0

DP
type: SiteQuality
SIO_000300: 1.445672e6

MQ
type: SiteQuality
SIO_000300: 2.9e1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 2313
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6607
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.551280742932953e-5
allele num: 39196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 2.07e1

MQ
type: SiteQuality
SIO_000300: 5.734e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

DP
type: SiteQuality
SIO_000300: 1.44559e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.197e0

GenotypeQuality
all individuals: 6607
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10304
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.653842228798857e-5
allele num: 39196
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 2.07e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 1.44559e6

FS
type: SiteQuality
SIO_000300: 2.68e0

MQ
type: SiteQuality
SIO_000300: 5.734e1

GenotypeQuality
all individuals: 287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10304
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 11879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1042
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.276161306789178e-4
allele num: 39180
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.251562890722681e-4
allele num: 7998
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

DP
type: SiteQuality
SIO_000300: 1.44543e6

VQSLOD
type: SiteQuality
SIO_000300: -8.854e-1

FS
type: SiteQuality
SIO_000300: 7.153e0

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 2.576e1

MQ
type: SiteQuality
SIO_000300: 5.663e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.82e-1

GenotypeQuality
all individuals: 2812
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4039
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3037
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.653927813163482e-5
allele num: 37680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7034
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.471983e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.179e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0098e2

MQRankSum
type: SiteQuality
SIO_000300: -3.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

FS
type: SiteQuality
SIO_000300: 6.651000000000001e1

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 2212
bin: 1.25e1
variant carriers: 2037

GenotypeQuality
all individuals: 1700
bin: 2.25e1
variant carriers: 1385

GenotypeQuality
all individuals: 530
bin: 3.75e1
variant carriers: 234

GenotypeQuality
all individuals: 4039
bin: 7.5e0
variant carriers: 2783

GenotypeQuality
all individuals: 11747
bin: 6.25e1
variant carriers: 206

GenotypeQuality
all individuals: 673
bin: 5.75e1
variant carriers: 307

GenotypeQuality
all individuals: 549
bin: 4.75e1
variant carriers: 198

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 269

GenotypeQuality
all individuals: 1719
bin: 7.75e1
variant carriers: 174

GenotypeQuality
all individuals: 913
bin: 8.75e1
variant carriers: 124

GenotypeQuality
all individuals: 3037
bin: 6.75e1
variant carriers: 142

GenotypeQuality
all individuals: 7415
bin: 9.75e1
variant carriers: 2846

Latino
type: Population
allele count: 617
allele frequency: 8.122696155871512e-2
allele num: 7596
num of homozygotes: 26

East Asian
type: Population
allele count: 592
allele frequency: 1.913380736910149e-1
allele num: 3094
num of homozygotes: 120

European (Non-Finnish)
type: Population
allele count: 2481
allele frequency: 6.584394904458599e-2
allele num: 37680
num of homozygotes: 442

African
type: Population
allele count: 404
allele frequency: 1.205970149253731e-1
allele num: 3350
num of homozygotes: 142

Other
type: Population
allele count: 54
allele frequency: 9.818181818181818e-2
allele num: 550
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 250
allele frequency: 5.946717411988582e-2
allele num: 4204
num of homozygotes: 19

South Asian
type: Population
allele count: 980
allele frequency: 1.393232868922377e-1
allele num: 7034
num of homozygotes: 292

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.179e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0098e2

FS
type: SiteQuality
SIO_000300: 6.651000000000001e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -3.264e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

DP
type: SiteQuality
SIO_000300: 1.471983e6

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.705e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.396358e6

GenotypeQuality
all individuals: 8214
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9900
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11724
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: -4.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

DP
type: SiteQuality
SIO_000300: 1.396244e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 3.453e1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9900
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.5277e1

VQSLOD
type: SiteQuality
SIO_000300: -1.436e1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.397676e6

MQ
type: SiteQuality
SIO_000300: 5.549e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 2.786e1

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9900
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.377031120903333e-4
allele num: 7262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.397676e6

VQSLOD
type: SiteQuality
SIO_000300: -1.436e1

MQ
type: SiteQuality
SIO_000300: 5.549e1

QD
type: SiteQuality
SIO_000300: 2.786e1

FS
type: SiteQuality
SIO_000300: 4.5277e1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 1680
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9899
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39020
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.729e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.473e0

DP
type: SiteQuality
SIO_000300: 1.397761e6

MQ
type: SiteQuality
SIO_000300: 2.9e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

GenotypeQuality
all individuals: 1666
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9901
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
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variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39020
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.787678767876788e-3
allele num: 7272
num of homozygotes: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3242
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.836e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

FS
type: SiteQuality
SIO_000300: 2.1461e1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e0

VQSLOD
type: SiteQuality
SIO_000300: -4.589e0

QD
type: SiteQuality
SIO_000300: 3.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.39802e6

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8617
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9899
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.561475409836066e-5
allele num: 39040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.443e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

DP
type: SiteQuality
SIO_000300: 1.398927e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 4.074e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
all individuals: 902
bin: 9.25e1
variant carriers: 105

GenotypeQuality
all individuals: 664
bin: 5.75e1
variant carriers: 230

GenotypeQuality
all individuals: 1113
bin: 2.75e1
variant carriers: 825

GenotypeQuality
all individuals: 1054
bin: 3.25e1
variant carriers: 735

GenotypeQuality
all individuals: 680
bin: 3.75e1
variant carriers: 335

GenotypeQuality
all individuals: 3655
bin: 7.5e0
variant carriers: 2617

GenotypeQuality
all individuals: 838
bin: 8.75e1
variant carriers: 101

GenotypeQuality
all individuals: 2120
bin: 2.25e1
variant carriers: 1758

GenotypeQuality
all individuals: 581
bin: 4.25e1
variant carriers: 203

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 152

GenotypeQuality
all individuals: 10708
bin: 6.25e1
variant carriers: 225

GenotypeQuality
all individuals: 662
bin: 5.25e1
variant carriers: 243

East Asian
type: Population
allele count: 812
allele frequency: 2.581055308328036e-1
allele num: 3146
num of homozygotes: 158

Latino
type: Population
allele count: 777
allele frequency: 1.021024967148489e-1
allele num: 7610
num of homozygotes: 26

European (Finnish)
type: Population
allele count: 315
allele frequency: 7.478632478632478e-2
allele num: 4212
num of homozygotes: 20

South Asian
type: Population
allele count: 1545
allele frequency: 2.08727370980816e-1
allele num: 7402
num of homozygotes: 475

African
type: Population
allele count: 476
allele frequency: 1.411625148279952e-1
allele num: 3372
num of homozygotes: 158

Other
type: Population
allele count: 73
allele frequency: 1.303571428571429e-1
allele num: 560
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 3323
allele frequency: 8.816194417913616e-2
allele num: 37692
num of homozygotes: 516

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

FS
type: SiteQuality
SIO_000300: 5.9772e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.697e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.593000000000001e1

MQ
type: SiteQuality
SIO_000300: 3.514e1

QD
type: SiteQuality
SIO_000300: 7.87e0

MQRankSum
type: SiteQuality
SIO_000300: -3.278e0

DP
type: SiteQuality
SIO_000300: 1.52918e6

GenotypeQuality
all individuals: 1761
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
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variant carriers: 0

GenotypeQuality
all individuals: 1918
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variant carriers: 0

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 931
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GenotypeQuality
all individuals: 2812
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GenotypeQuality
all individuals: 10794
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GenotypeQuality
all individuals: 1461
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.538199908624803e-5
allele num: 39398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.691e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 5.782e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 2.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.53e0

QD
type: SiteQuality
SIO_000300: 2.739e1

DP
type: SiteQuality
SIO_000300: 1.450548e6

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.5e0
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GenotypeQuality
all individuals: 11285
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variant carriers: 1

GenotypeQuality
all individuals: 238
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GenotypeQuality
all individuals: 932
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 1773
bin: 1.25e1
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GenotypeQuality
all individuals: 1148
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variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.293995859213251e-4
allele num: 7728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.57e0

DP
type: SiteQuality
SIO_000300: 1.452882e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

FS
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 5.749e1

VQSLOD
type: SiteQuality
SIO_000300: -2.222e0

GenotypeQuality
all individuals: 1459
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11285
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39422
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

DP
type: SiteQuality
SIO_000300: 1.455981e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.133e0

QD
type: SiteQuality
SIO_000300: 2.963e1

MQRankSum
type: SiteQuality
SIO_000300: -2.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

MQ
type: SiteQuality
SIO_000300: 2.9e1

GenotypeQuality
all individuals: 932
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11285
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.773e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

MQ
type: SiteQuality
SIO_000300: 5.625e1

MQRankSum
type: SiteQuality
SIO_000300: -2.834e0

FS
type: SiteQuality
SIO_000300: 1.5293e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

DP
type: SiteQuality
SIO_000300: 1.461873e6

GenotypeQuality
all individuals: 944
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8955
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11285
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.552e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.467168e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

MQ
type: SiteQuality
SIO_000300: 4.011e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.471056e6

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 7.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.503e1

VQSLOD
type: SiteQuality
SIO_000300: -3.243e0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10688
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.47489e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e0

MQ
type: SiteQuality
SIO_000300: 5.502e1

VQSLOD
type: SiteQuality
SIO_000300: -1.027e0

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

QD
type: SiteQuality
SIO_000300: 1.009e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 508
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11287
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7046
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.518e0

MQ
type: SiteQuality
SIO_000300: 5.452e1

VQSLOD
type: SiteQuality
SIO_000300: -7.59e-2

QD
type: SiteQuality
SIO_000300: 3.291e1

FS
type: SiteQuality
SIO_000300: 4.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.480196e6

GenotypeQuality
all individuals: 507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
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variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.232134056185313e-4
allele num: 8116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40068
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.656748140276302e-4
allele num: 3764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

DP
type: SiteQuality
SIO_000300: 1.487092e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 2.592e0

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQ
type: SiteQuality
SIO_000300: 5.272e1

GenotypeQuality
all individuals: 955
bin: 7.75e1
variant carriers: 382

GenotypeQuality
all individuals: 3125
bin: 2.5e0
variant carriers: 482

GenotypeQuality
all individuals: 1784
bin: 1.25e1
variant carriers: 1472

GenotypeQuality
all individuals: 1127
bin: 5.25e1
variant carriers: 857

GenotypeQuality
all individuals: 8526
bin: 6.25e1
variant carriers: 629

GenotypeQuality
all individuals: 11425
bin: 9.75e1
variant carriers: 9772

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 344

GenotypeQuality
all individuals: 1899
bin: 3.75e1
variant carriers: 1615

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 296

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 334

Latino
type: Population
allele count: 2648
allele frequency: 3.50635593220339e-1
allele num: 7552
num of homozygotes: 279

South Asian
type: Population
allele count: 4922
allele frequency: 5.236170212765957e-1
allele num: 9400
num of homozygotes: 1725

European (Finnish)
type: Population
allele count: 1157
allele frequency: 2.761336515513126e-1
allele num: 4190
num of homozygotes: 177

East Asian
type: Population
allele count: 3284
allele frequency: 6.620967741935484e-1
allele num: 4960
num of homozygotes: 1116

African
type: Population
allele count: 1590
allele frequency: 4.091610910962429e-1
allele num: 3886
num of homozygotes: 541

Other
type: Population
allele count: 205
allele frequency: 3.571428571428572e-1
allele num: 574
num of homozygotes: 50

European (Non-Finnish)
type: Population
allele count: 11943
allele frequency: 3.068602261048304e-1
allele num: 38920
num of homozygotes: 2450

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.242e-1

DP
type: SiteQuality
SIO_000300: 1.838747e6

MQ
type: SiteQuality
SIO_000300: 4.594e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

VQSLOD
type: SiteQuality
SIO_000300: 3.055e1

FS
type: SiteQuality
SIO_000300: 1.8851e1

MQRankSum
type: SiteQuality
SIO_000300: -3.559e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.519e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

GenotypeQuality
all individuals: 4739
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
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GenotypeQuality
all individuals: 15410
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 7.25e1
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GenotypeQuality
all individuals: 1469
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 783
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.828989483310471e-3
allele num: 4374
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 3.231e1

VQSLOD
type: SiteQuality
SIO_000300: -3.972e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.96e-1

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.636e0

FS
type: SiteQuality
SIO_000300: 6.36e0

DP
type: SiteQuality
SIO_000300: 1.681292e6

GenotypeQuality
all individuals: 1109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.5e0
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GenotypeQuality
all individuals: 1453
bin: 2.75e1
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GenotypeQuality
all individuals: 1343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 1398
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variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 1153
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variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.761804087385483e-4
allele num: 5676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.033e1

MQRankSum
type: SiteQuality
SIO_000300: 4.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.346e0

DP
type: SiteQuality
SIO_000300: 1.681972e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.698e1

GenotypeQuality
all individuals: 2376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 2.75e1
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GenotypeQuality
all individuals: 2412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 15408
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GenotypeQuality
all individuals: 6923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 9.25e1
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GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.463687898942106e-5
allele num: 44806
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: -7.338e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.179e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.692297e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 1486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.118067978533095e-4
allele num: 8944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.981e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQRankSum
type: SiteQuality
SIO_000300: -2.443e0

DP
type: SiteQuality
SIO_000300: 1.697192e6

MQ
type: SiteQuality
SIO_000300: 5.648e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

FS
type: SiteQuality
SIO_000300: 8.292e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.920860545524395e-4
allele num: 10412
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.698865e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

MQ
type: SiteQuality
SIO_000300: 5.42e1

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1377
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.219263204616068e-5
allele num: 45060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.916e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.244e0

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.509e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.711294e6

GenotypeQuality
all individuals: 12432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.878287002253945e-4
allele num: 10648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.021e1

FS
type: SiteQuality
SIO_000300: 1.1669e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.726987e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

QD
type: SiteQuality
SIO_000300: 2.455e1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.103e0

GenotypeQuality
all individuals: 349
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.135757354284671e-5
allele num: 10946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.685e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

MQ
type: SiteQuality
SIO_000300: 5.22e1

QD
type: SiteQuality
SIO_000300: 2.01e1

VQSLOD
type: SiteQuality
SIO_000300: -1.454e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.741562e6

GenotypeQuality
all individuals: 2604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1081
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 906
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variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.157590403037887e-5
allele num: 46348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.743065e6

FS
type: SiteQuality
SIO_000300: 6.229e0

MQ
type: SiteQuality
SIO_000300: 5.515e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.33e0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 8.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

GenotypeQuality
all individuals: 7794
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15467
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 197
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variant carriers: 1

African
type: Population
allele count: 52
allele frequency: 1.075268817204301e-2
allele num: 4836
num of homozygotes: 13

South Asian
type: Population
allele count: 1
allele frequency: 9.072763563781528e-5
allele num: 11022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.513243595310464e-4
allele num: 9212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.533742331288344e-3
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 5.168849069607167e-4
allele num: 46432
num of homozygotes: 5

DP
type: SiteQuality
SIO_000300: 1.745373e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.021e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.599e0

FS
type: SiteQuality
SIO_000300: 1.282e1

MQ
type: SiteQuality
SIO_000300: 5.495e1

QD
type: SiteQuality
SIO_000300: 1.76e1

VQSLOD
type: SiteQuality
SIO_000300: -2.94e-2

GenotypeQuality
all individuals: 1227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1555
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.276e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.747074e6

QD
type: SiteQuality
SIO_000300: 2.633e1

MQ
type: SiteQuality
SIO_000300: 3.764e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7606
bin: 2.25e1
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GenotypeQuality
all individuals: 1180
bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1046
bin: 2.75e1
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GenotypeQuality
all individuals: 913
bin: 8.75e1
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GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46754
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 2.860645688598284e-3
allele num: 4894
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.176e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e0

FS
type: SiteQuality
SIO_000300: 1.2665e1

VQSLOD
type: SiteQuality
SIO_000300: -3.556e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.599e0

DP
type: SiteQuality
SIO_000300: 1.749298e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

MQ
type: SiteQuality
SIO_000300: 5.396e1

GenotypeQuality
all individuals: 1731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1235
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variant carriers: 0

GenotypeQuality
all individuals: 2090
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variant carriers: 0

GenotypeQuality
all individuals: 863
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variant carriers: 0

GenotypeQuality
all individuals: 17253
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GenotypeQuality
all individuals: 11013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.87913409500902e-5
allele num: 53216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -2.383e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.267e1

FS
type: SiteQuality
SIO_000300: 2.502e0

VQSLOD
type: SiteQuality
SIO_000300: -2.711e0

DP
type: SiteQuality
SIO_000300: 1.964903e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
all individuals: 1304
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 670
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.880123336090848e-4
allele num: 53188
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.620360388110272e-4
allele num: 12986
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.351e0

DP
type: SiteQuality
SIO_000300: 1.961741e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.61e-2

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

GenotypeQuality
all individuals: 1863
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 17252
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 4.806151874399231e-4
allele num: 6242
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.584647195657793e-4
allele num: 7738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.767329716696805e-5
allele num: 53088
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 3.653e0

MQ
type: SiteQuality
SIO_000300: 5.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.56e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.643e0

DP
type: SiteQuality
SIO_000300: 1.956716e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

QD
type: SiteQuality
SIO_000300: 9.69e0

VQSLOD
type: SiteQuality
SIO_000300: -9.171e-1

GenotypeQuality
all individuals: 2633
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
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variant carriers: 0

GenotypeQuality
all individuals: 17251
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.892720596585532e-5
allele num: 52834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

DP
type: SiteQuality
SIO_000300: 1.951892e6

FS
type: SiteQuality
SIO_000300: 2.3936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.553000000000001e0

MQ
type: SiteQuality
SIO_000300: 4.863e1

QD
type: SiteQuality
SIO_000300: 1.617e1

GenotypeQuality
all individuals: 1904
bin: 6.75e1
variant carriers: 1064

GenotypeQuality
all individuals: 847
bin: 7.25e1
variant carriers: 517

GenotypeQuality
all individuals: 930
bin: 8.25e1
variant carriers: 716

GenotypeQuality
all individuals: 1935
bin: 5.25e1
variant carriers: 1578

GenotypeQuality
all individuals: 981
bin: 5.75e1
variant carriers: 800

GenotypeQuality
all individuals: 1185
bin: 7.75e1
variant carriers: 854

GenotypeQuality
all individuals: 1942
bin: 4.75e1
variant carriers: 1572

GenotypeQuality
all individuals: 1062
bin: 2.75e1
variant carriers: 546

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 342

GenotypeQuality
all individuals: 2010
bin: 3.75e1
variant carriers: 1446

European (Non-Finnish)
type: Population
allele count: 25737
allele frequency: 4.977565466290179e-1
allele num: 51706
num of homozygotes: 7063

East Asian
type: Population
allele count: 5894
allele frequency: 7.821125265392781e-1
allele num: 7536
num of homozygotes: 2283

Latino
type: Population
allele count: 5129
allele frequency: 5.214518096787312e-1
allele num: 9836
num of homozygotes: 1017

South Asian
type: Population
allele count: 8558
allele frequency: 6.620764350920625e-1
allele num: 12926
num of homozygotes: 3127

Other
type: Population
allele count: 385
allele frequency: 5.245231607629428e-1
allele num: 734
num of homozygotes: 107

European (Finnish)
type: Population
allele count: 2539
allele frequency: 4.604642727602467e-1
allele num: 5514
num of homozygotes: 606

African
type: Population
allele count: 3950
allele frequency: 6.422764227642277e-1
allele num: 6150
num of homozygotes: 1551

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.611e0

MQRankSum
type: SiteQuality
SIO_000300: -4.608e0

FS
type: SiteQuality
SIO_000300: 1.0254e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.547e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 4.782e1

QD
type: SiteQuality
SIO_000300: 1.493e1

DP
type: SiteQuality
SIO_000300: 1.9656e6

GenotypeQuality
all individuals: 3068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
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variant carriers: 0

GenotypeQuality
all individuals: 1249
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variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
all individuals: 1989
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variant carriers: 0

GenotypeQuality
all individuals: 9626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
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variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 1925
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variant carriers: 0

GenotypeQuality
all individuals: 12117
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.692906720839682e-4
allele num: 11814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

FS
type: SiteQuality
SIO_000300: 4.943e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e0

MQ
type: SiteQuality
SIO_000300: 5.545e1

DP
type: SiteQuality
SIO_000300: 1.517949e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.214e0

VQSLOD
type: SiteQuality
SIO_000300: -2.882e0

QD
type: SiteQuality
SIO_000300: 7.3e-1

GenotypeQuality
all individuals: 1360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
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variant carriers: 0

GenotypeQuality
all individuals: 2258
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variant carriers: 0

GenotypeQuality
all individuals: 1303
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variant carriers: 0

GenotypeQuality
all individuals: 1244
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variant carriers: 0

GenotypeQuality
all individuals: 605
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GenotypeQuality
all individuals: 11236
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variant carriers: 0

GenotypeQuality
all individuals: 771
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variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.051303616484441e-4
allele num: 9512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.525149190110827e-5
allele num: 11730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.464128843338214e-4
allele num: 6830
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.581e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.031e1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.128e0

QD
type: SiteQuality
SIO_000300: 1.12e1

DP
type: SiteQuality
SIO_000300: 1.50185e6

GenotypeQuality
all individuals: 622
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 1873
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2963
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GenotypeQuality
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GenotypeQuality
all individuals: 11104
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variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.707358716066246e-4
allele num: 11714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2488e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.015e0

QD
type: SiteQuality
SIO_000300: 2.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.497551e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.81e-1

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 10911
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GenotypeQuality
all individuals: 248
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1877
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variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48698
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.548469823901521e-5
allele num: 11698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

DP
type: SiteQuality
SIO_000300: 1.493603e6

MQRankSum
type: SiteQuality
SIO_000300: -3.673e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.424e1

QD
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 1737
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 10597
bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.35042735042735e-4
allele num: 46800
num of homozygotes: 4

Latino
type: Population
allele count: 4
allele frequency: 4.339336081579518e-4
allele num: 9218
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.372e1

DP
type: SiteQuality
SIO_000300: 1.450537e6

MQRankSum
type: SiteQuality
SIO_000300: 4.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQ
type: SiteQuality
SIO_000300: 5.718e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.5714e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.16e-1

GenotypeQuality
all individuals: 4301
bin: 2.25e1
variant carriers: 2902

GenotypeQuality
all individuals: 2139
bin: 2.75e1
variant carriers: 1530

GenotypeQuality
all individuals: 698
bin: 5.75e1
variant carriers: 559

GenotypeQuality
all individuals: 549
bin: 9.25e1
variant carriers: 392

GenotypeQuality
all individuals: 837
bin: 7.75e1
variant carriers: 483

GenotypeQuality
all individuals: 736
bin: 7.25e1
variant carriers: 375

GenotypeQuality
all individuals: 1341
bin: 5.25e1
variant carriers: 1084

GenotypeQuality
all individuals: 3019
bin: 3.25e1
variant carriers: 2361

GenotypeQuality
all individuals: 496
bin: 8.75e1
variant carriers: 343

GenotypeQuality
all individuals: 5443
bin: 6.25e1
variant carriers: 744

East Asian
type: Population
allele count: 4214
allele frequency: 7.188672807915387e-1
allele num: 5862
num of homozygotes: 1468

South Asian
type: Population
allele count: 6313
allele frequency: 5.927699530516432e-1
allele num: 10650
num of homozygotes: 2073

European (Non-Finnish)
type: Population
allele count: 17821
allele frequency: 4.08251626500504e-1
allele num: 43652
num of homozygotes: 3589

Latino
type: Population
allele count: 3936
allele frequency: 4.579939492669304e-1
allele num: 8594
num of homozygotes: 504

African
type: Population
allele count: 2432
allele frequency: 5.264069264069264e-1
allele num: 4620
num of homozygotes: 829

Other
type: Population
allele count: 279
allele frequency: 4.400630914826498e-1
allele num: 634
num of homozygotes: 60

European (Finnish)
type: Population
allele count: 1795
allele frequency: 3.788518362178134e-1
allele num: 4738
num of homozygotes: 285

FS
type: SiteQuality
SIO_000300: 4.882e0

VQSLOD
type: SiteQuality
SIO_000300: 8.859999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.739e-1

DP
type: SiteQuality
SIO_000300: 1.450492e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

QD
type: SiteQuality
SIO_000300: 1.041e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.592e0

MQ
type: SiteQuality
SIO_000300: 5.026e1

GenotypeQuality
all individuals: 10114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4411
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7863
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.599e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.843e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

MQ
type: SiteQuality
SIO_000300: 3.912e1

VQSLOD
type: SiteQuality
SIO_000300: -2.268e0

DP
type: SiteQuality
SIO_000300: 1.13137e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

GenotypeQuality
all individuals: 10778
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.119570085087326e-4
allele num: 8932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.606e1

QD
type: SiteQuality
SIO_000300: 7.48e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.083e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 1.095025e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.357e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37092
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 9.993337774816789e-4
allele num: 3002
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 9.94232e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 2.564e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 1251
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.72722e5

MQ
type: SiteQuality
SIO_000300: 3.575e1

QD
type: SiteQuality
SIO_000300: 3.379e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.12e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

FS
type: SiteQuality
SIO_000300: 2.793e0

MQ
type: SiteQuality
SIO_000300: 5.518e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 9.72841e5

QD
type: SiteQuality
SIO_000300: 1.553e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.99e-2

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29588
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.26e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.389e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.404e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.339e-1

DP
type: SiteQuality
SIO_000300: 9.76999e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

GenotypeQuality
all individuals: 3220
bin: 9.75e1
variant carriers: 1076

GenotypeQuality
all individuals: 734
bin: 8.25e1
variant carriers: 89

GenotypeQuality
all individuals: 3185
bin: 2.25e1
variant carriers: 590

GenotypeQuality
all individuals: 870
bin: 7.75e1
variant carriers: 76

GenotypeQuality
all individuals: 1276
bin: 3.75e1
variant carriers: 166

GenotypeQuality
all individuals: 885
bin: 4.25e1
variant carriers: 140

GenotypeQuality
all individuals: 482
bin: 8.75e1
variant carriers: 74

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 91

GenotypeQuality
all individuals: 1737
bin: 6.75e1
variant carriers: 121

GenotypeQuality
all individuals: 1920
bin: 7.5e0
variant carriers: 884

African
type: Population
allele count: 111
allele frequency: 4.549180327868853e-2
allele num: 2440
num of homozygotes: 11

Latino
type: Population
allele count: 405
allele frequency: 7.444852941176471e-2
allele num: 5440
num of homozygotes: 6

South Asian
type: Population
allele count: 501
allele frequency: 9.510250569476082e-2
allele num: 5268
num of homozygotes: 62

European (Non-Finnish)
type: Population
allele count: 1283
allele frequency: 4.336217385426525e-2
allele num: 29588
num of homozygotes: 47

Other
type: Population
allele count: 24
allele frequency: 5.882352941176471e-2
allele num: 408
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 111
allele frequency: 3.209947946790052e-2
allele num: 3458
num of homozygotes: 5

East Asian
type: Population
allele count: 268
allele frequency: 1.390041493775934e-1
allele num: 1928
num of homozygotes: 23

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.26e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.339e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.389e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.404e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 9.76999e5

GenotypeQuality
all individuals: 3185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.404e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.26e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.339e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.389e0

DP
type: SiteQuality
SIO_000300: 9.76999e5

GenotypeQuality
all individuals: 1250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36664
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.531862745098039e-4
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.029e0

DP
type: SiteQuality
SIO_000300: 8.92119e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

FS
type: SiteQuality
SIO_000300: 9.787000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.642e1

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.270000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.552e0

QD
type: SiteQuality
SIO_000300: 2.831e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e0

FS
type: SiteQuality
SIO_000300: 9.723000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 5.573e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.982e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.339e0

DP
type: SiteQuality
SIO_000300: 8.9129e5

GenotypeQuality
all individuals: 756
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.723000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.339e0

VQSLOD
type: SiteQuality
SIO_000300: -8.982e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.16e-2

DP
type: SiteQuality
SIO_000300: 8.9129e5

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1166
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.653223666755107e-4
allele num: 7538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.7304499781564e-5
allele num: 36624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.976284584980237e-3
allele num: 506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.465003465003465e-4
allele num: 2886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.339e0

MQ
type: SiteQuality
SIO_000300: 5.573e1

FS
type: SiteQuality
SIO_000300: 9.723000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.16e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -8.982e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

DP
type: SiteQuality
SIO_000300: 8.9129e5

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9930
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.4608999563128e-5
allele num: 36624
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.355e1

MQRankSum
type: SiteQuality
SIO_000300: -1.91e0

MQ
type: SiteQuality
SIO_000300: 5.573e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

DP
type: SiteQuality
SIO_000300: 8.9129e5

VQSLOD
type: SiteQuality
SIO_000300: -8.982e-1

FS
type: SiteQuality
SIO_000300: 9.723000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.339e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

GenotypeQuality
all individuals: 679
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.72985367984276e-5
allele num: 36632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.563e1

DP
type: SiteQuality
SIO_000300: 8.90185e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.419999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.643e1

GenotypeQuality
all individuals: 1336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.73134491423577e-5
allele num: 36612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 5.267e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.548e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 8.88672e5

FS
type: SiteQuality
SIO_000300: 1.7652e1

QD
type: SiteQuality
SIO_000300: 1.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 3147
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 773
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.303632988597189e-4
allele num: 7542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.548e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

DP
type: SiteQuality
SIO_000300: 8.88672e5

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 5.267e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

FS
type: SiteQuality
SIO_000300: 1.7652e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.855e1

GenotypeQuality
all individuals: 1336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 555
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.325908247149297e-4
allele num: 7542
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.383125864453665e-3
allele num: 2892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.194034742707309e-5
allele num: 36612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 5.267e1

VQSLOD
type: SiteQuality
SIO_000300: -7.548e-1

FS
type: SiteQuality
SIO_000300: 1.7652e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 8.88672e5

QD
type: SiteQuality
SIO_000300: 1.855e1

GenotypeQuality
all individuals: 1155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: -7.548e-1

FS
type: SiteQuality
SIO_000300: 1.7652e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 8.88672e5

MQ
type: SiteQuality
SIO_000300: 5.267e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

GenotypeQuality
all individuals: 1836
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.548e-1

QD
type: SiteQuality
SIO_000300: 1.855e1

FS
type: SiteQuality
SIO_000300: 1.7652e1

MQ
type: SiteQuality
SIO_000300: 5.267e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.371e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 8.88672e5

GenotypeQuality
all individuals: 1146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 780
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 7

South Asian
type: Population
allele count: 5
allele frequency: 7.666360012266176e-4
allele num: 6522
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.657454158915759e-4
allele num: 7526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.095650268434316e-4
allele num: 36508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.457814661134163e-4
allele num: 2892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1242e1

QD
type: SiteQuality
SIO_000300: 2.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.298e0

MQ
type: SiteQuality
SIO_000300: 4.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.241e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.31e0

DP
type: SiteQuality
SIO_000300: 8.88031e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.362e0

GenotypeQuality
all individuals: 327
bin: 1.25e1
variant carriers: 89

GenotypeQuality
all individuals: 504
bin: 1.75e1
variant carriers: 179

GenotypeQuality
all individuals: 989
bin: 7.5e0
variant carriers: 70

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 813
bin: 2.5e0
variant carriers: 17

GenotypeQuality
all individuals: 1038
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2690
bin: 6.75e1
variant carriers: 17

GenotypeQuality
all individuals: 866
bin: 4.75e1
variant carriers: 34

GenotypeQuality
all individuals: 9547
bin: 6.25e1
variant carriers: 22

GenotypeQuality
all individuals: 3374
bin: 2.25e1
variant carriers: 123

Other
type: Population
allele count: 3
allele frequency: 6.097560975609756e-3
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 239
allele frequency: 6.709713644020213e-3
allele num: 35620
num of homozygotes: 4

African
type: Population
allele count: 18
allele frequency: 6.382978723404255e-3
allele num: 2820
num of homozygotes: 0

Latino
type: Population
allele count: 64
allele frequency: 8.774335069920482e-3
allele num: 7294
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.435460301997077e-3
allele num: 4106
num of homozygotes: 0

East Asian
type: Population
allele count: 36
allele frequency: 1.30718954248366e-2
allele num: 2754
num of homozygotes: 3

South Asian
type: Population
allele count: 135
allele frequency: 2.138105796642382e-2
allele num: 6314
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.382e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.663e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.893e0

FS
type: SiteQuality
SIO_000300: 1.8418e1

VQSLOD
type: SiteQuality
SIO_000300: 3.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.561e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 8.85334e5

QD
type: SiteQuality
SIO_000300: 1.519e1

GenotypeQuality
all individuals: 3374
bin: 2.25e1
variant carriers: 26

GenotypeQuality
all individuals: 989
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 1616
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1218
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 813
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 1889
bin: 3.25e1
variant carriers: 17

GenotypeQuality
all individuals: 2690
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9547
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 563
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.217730150998539e-3
allele num: 4106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 3.325942350332594e-3
allele num: 6314
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 1.207186973610331e-3
allele num: 35620
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.418439716312057e-3
allele num: 2820
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 2.904865649963689e-3
allele num: 2754
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 2.879078694817658e-3
allele num: 7294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
SIO_000300: -1.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.663e-1

DP
type: SiteQuality
SIO_000300: 8.85334e5

VQSLOD
type: SiteQuality
SIO_000300: 3.385e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.561e0

MQ
type: SiteQuality
SIO_000300: 5.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 1218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3223
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1038
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 4.112969564025226e-4
allele num: 7294
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.807411566535654e-5
allele num: 35620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.561e0

FS
type: SiteQuality
SIO_000300: 1.8418e1

MQ
type: SiteQuality
SIO_000300: 5.382e1

DP
type: SiteQuality
SIO_000300: 8.85334e5

MQRankSum
type: SiteQuality
SIO_000300: -1.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.663e-1

QD
type: SiteQuality
SIO_000300: 1.519e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.385e1