21-45390548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390548
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390548
    reference: chr 21
allele count: 2
allele frequency: 1.66688891852247e-5
allele num: 119984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.525C>T
  hgvsp: ENST00000422850.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.525C>T
  hgvsp: ENST00000291572.8:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.525C>T
  hgvsp: ENST00000457068.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3364C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.525C>T
  hgvsp: ENST00000398063.2:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.525C>T
  hgvsp: ENST00000398061.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.525C>T
  hgvsp: ENST00000398058.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.525C>T
  hgvsp: ENST00000327505.2:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.525C>T
  hgvsp: ENST00000546158.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.572C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys175Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

21-45390557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390557
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390557
    reference: chr 21
allele count: 131
allele frequency: 1.087859159608039e-3
allele num: 120420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.581G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.534G>A
  hgvsp: ENST00000546158.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.534G>A
  hgvsp: ENST00000422850.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3373G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.534G>A
  hgvsp: ENST00000398061.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.534G>A
  hgvsp: ENST00000398063.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.534G>A
  hgvsp: ENST00000327505.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.534G>A
  hgvsp: ENST00000398058.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.534G>A
  hgvsp: ENST00000291572.8:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.534G>A
  hgvsp: ENST00000457068.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37739
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16038
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr178Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

21-45390566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390566
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390566
    reference: chr 21
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.543G>A
  hgvsp: ENST00000422850.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.543G>A
  hgvsp: ENST00000291572.8:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.543G>A
  hgvsp: ENST00000398061.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3382G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.543G>A
  hgvsp: ENST00000398063.2:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.543G>A
  hgvsp: ENST00000398058.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.543G>A
  hgvsp: ENST00000327505.2:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.543G>A
  hgvsp: ENST00000457068.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.590G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.543G>A
  hgvsp: ENST00000546158.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr181Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

21-45390568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390568
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390568
    reference: chr 21
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.545A>G
  hgvsp: ENSP00000291572.8:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.545A>G
  hgvsp: ENSP00000381138.1:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3384A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.592A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.545A>G
  hgvsp: ENSP00000414440.1:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.545A>G
  hgvsp: ENSP00000381135.1:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.545A>G
  hgvsp: ENSP00000381140.2:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.545A>G
  hgvsp: ENSP00000443510.1:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.545A>G
  hgvsp: ENSP00000332989.2:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.545A>G
  hgvsp: ENSP00000413906.1:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu182Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

21-45390575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390575
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390575
    reference: chr 21
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3391G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.552G>A
  hgvsp: ENST00000398058.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.552G>A
  hgvsp: ENST00000398061.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.552G>A
  hgvsp: ENST00000422850.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.552G>A
  hgvsp: ENST00000398063.2:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.552G>A
  hgvsp: ENST00000327505.2:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.552G>A
  hgvsp: ENST00000457068.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.552G>A
  hgvsp: ENST00000291572.8:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.552G>A
  hgvsp: ENST00000546158.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.599G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys184Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

21-45390579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390579
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390579
    reference: chr 21
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.556C>T
  hgvsp: ENSP00000443510.1:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.556C>T
  hgvsp: ENSP00000381138.1:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.556C>T
  hgvsp: ENSP00000381135.1:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.603C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.556C>T
  hgvsp: ENSP00000413906.1:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3395C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.556C>T
  hgvsp: ENSP00000332989.2:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.556C>T
  hgvsp: ENSP00000414440.1:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.556C>T
  hgvsp: ENSP00000291572.8:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.556C>T
  hgvsp: ENSP00000381140.2:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg186Cys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

21-45390580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390580
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390580
    reference: chr 21
allele count: 4
allele frequency: 3.315100281783524e-5
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.557G>A
  hgvsp: ENSP00000413906.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.604G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.557G>A
  hgvsp: ENSP00000414440.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.557G>A
  hgvsp: ENSP00000381138.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.557G>A
  hgvsp: ENSP00000291572.8:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.557G>A
  hgvsp: ENSP00000332989.2:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3396G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.557G>A
  hgvsp: ENSP00000443510.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.557G>A
  hgvsp: ENSP00000381135.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.557G>A
  hgvsp: ENSP00000381140.2:p.Arg186His
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg186His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

21-45390581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390581
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390581
    reference: chr 21
allele count: 54
allele frequency: 4.474940334128878e-4
allele num: 120672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.558C>T
  hgvsp: ENST00000546158.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.558C>T
  hgvsp: ENST00000398061.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.558C>T
  hgvsp: ENST00000422850.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.558C>T
  hgvsp: ENST00000457068.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.558C>T
  hgvsp: ENST00000327505.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.558C>T
  hgvsp: ENST00000291572.8:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.558C>T
  hgvsp: ENST00000398063.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.558C>T
  hgvsp: ENST00000398058.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.605C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3397C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16338
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg186Arg
num of homozygotes: 1
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

21-45390618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390618
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390618
    reference: chr 21
allele count: 1
allele frequency: 8.349754517217195e-6
allele num: 119764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.595G>A
  hgvsp: ENSP00000291572.8:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.595G>A
  hgvsp: ENSP00000381138.1:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.595G>A
  hgvsp: ENSP00000381140.2:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3434G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.595G>A
  hgvsp: ENSP00000443510.1:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.595G>A
  hgvsp: ENSP00000381135.1:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.595G>A
  hgvsp: ENSP00000332989.2:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.595G>A
  hgvsp: ENSP00000414440.1:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.595G>A
  hgvsp: ENSP00000413906.1:p.Val199Ile
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.642G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val199Ile
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

21-45390627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390627
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390627
    reference: chr 21
allele count: 1
allele frequency: 8.3948959032908e-6
allele num: 119120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.604T>C
  hgvsp: ENSP00000381135.1:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.651T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.604T>C
  hgvsp: ENSP00000443510.1:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.604T>C
  hgvsp: ENSP00000381140.2:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.604T>C
  hgvsp: ENSP00000381138.1:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.604T>C
  hgvsp: ENSP00000291572.8:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.604T>C
  hgvsp: ENSP00000413906.1:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.604T>C
  hgvsp: ENSP00000414440.1:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.604T>C
  hgvsp: ENSP00000332989.2:p.Tyr202His
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3443T>C
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr202His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

21-45390636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390636
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390636
    reference: chr 21
allele count: 1
allele frequency: 8.458233244239943e-6
allele num: 118228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.613C>T
  hgvsp: ENST00000457068.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.613C>T
  hgvsp: ENST00000291572.8:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.613C>T
  hgvsp: ENST00000327505.2:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.613C>T
  hgvsp: ENST00000546158.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.613C>T
  hgvsp: ENST00000422850.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.613C>T
  hgvsp: ENST00000398063.2:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.613C>T
  hgvsp: ENST00000398061.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.613C>T
  hgvsp: ENST00000398058.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3452C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.660C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu205Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

21-45390638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390638
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390638
    reference: chr 21
allele count: 1
allele frequency: 8.465393471488555e-6
allele num: 118128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.615G>A
  hgvsp: ENST00000327505.2:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.615G>A
  hgvsp: ENST00000398058.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.615G>A
  hgvsp: ENST00000398061.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.615G>A
  hgvsp: ENST00000398063.2:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.615G>A
  hgvsp: ENST00000422850.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.615G>A
  hgvsp: ENST00000546158.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.662G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.615G>A
  hgvsp: ENST00000291572.8:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.615G>A
  hgvsp: ENST00000457068.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3454G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu205Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

21-45390641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390641
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390641
    reference: chr 21
allele count: 14
allele frequency: 1.190273762965482e-4
allele num: 117620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.665G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.618G>A
  hgvsp: ENST00000398063.2:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.618G>A
  hgvsp: ENST00000546158.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.618G>A
  hgvsp: ENST00000291572.8:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.618G>A
  hgvsp: ENST00000457068.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.618G>A
  hgvsp: ENST00000398058.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.618G>A
  hgvsp: ENST00000422850.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.618G>A
  hgvsp: ENST00000398061.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3457G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.618G>A
  hgvsp: ENST00000327505.2:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15471
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro206Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

21-45390641-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390641
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390641
    reference: chr 21
allele count: 14
allele frequency: 1.190273762965482e-4
allele num: 117620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.618G>T
  hgvsp: ENST00000398061.1:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.618G>T
  hgvsp: ENST00000398058.1:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.618G>T
  hgvsp: ENST00000327505.2:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.618G>T
  hgvsp: ENST00000546158.1:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.618G>T
  hgvsp: ENST00000291572.8:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.618G>T
  hgvsp: ENST00000398063.2:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.618G>T
  hgvsp: ENST00000422850.1:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.618G>T
  hgvsp: ENST00000457068.1:c.618G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3457G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.665G>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15471
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4612
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro206Pro
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

21-45390662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390662
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390662
    reference: chr 21
allele count: 5
allele frequency: 4.327655449383742e-5
allele num: 115536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.639C>T
  hgvsp: ENST00000546158.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.639C>T
  hgvsp: ENST00000422850.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.639C>T
  hgvsp: ENST00000291572.8:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.639C>T
  hgvsp: ENST00000398063.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.639C>T
  hgvsp: ENST00000457068.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3478C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.639C>T
  hgvsp: ENST00000327505.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.639C>T
  hgvsp: ENST00000398061.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.686C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.639C>T
  hgvsp: ENST00000398058.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr213Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-45390663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390663
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390663
    reference: chr 21
allele count: 1
allele frequency: 8.687493484379887e-6
allele num: 115108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.640G>A
  hgvsp: ENSP00000291572.8:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.640G>A
  hgvsp: ENSP00000381135.1:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.640G>A
  hgvsp: ENSP00000381140.2:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.687G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.640G>A
  hgvsp: ENSP00000381138.1:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.640G>A
  hgvsp: ENSP00000414440.1:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.640G>A
  hgvsp: ENSP00000443510.1:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.640G>A
  hgvsp: ENSP00000413906.1:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.640G>A
  hgvsp: ENSP00000332989.2:p.Ala214Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3479G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala214Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

21-45390675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390675
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390675
    reference: chr 21
allele count: 1
allele frequency: 8.795384182381086e-6
allele num: 113696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.652C>T
  hgvsp: ENSP00000291572.8:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.652C>T
  hgvsp: ENSP00000381135.1:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.699C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.652C>T
  hgvsp: ENSP00000381138.1:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3491C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.652C>T
  hgvsp: ENSP00000443510.1:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.652C>T
  hgvsp: ENSP00000413906.1:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.652C>T
  hgvsp: ENSP00000414440.1:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.652C>T
  hgvsp: ENSP00000332989.2:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.652C>T
  hgvsp: ENSP00000381140.2:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu218Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

21-45390678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390678
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390678
    reference: chr 21
allele count: 1
allele frequency: 8.828307083833604e-6
allele num: 113272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.655C>T
  hgvsp: ENSP00000381138.1:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.655C>T
  hgvsp: ENSP00000291572.8:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.655C>T
  hgvsp: ENSP00000413906.1:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3494C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.655C>T
  hgvsp: ENSP00000414440.1:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.655C>T
  hgvsp: ENSP00000332989.2:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.655C>T
  hgvsp: ENSP00000381135.1:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.655C>T
  hgvsp: ENSP00000443510.1:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.655C>T
  hgvsp: ENSP00000381140.2:p.Arg219Trp
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.702C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg219Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

21-45390679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390679
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390679
    reference: chr 21
allele count: 5
allele frequency: 4.417585524455754e-5
allele num: 113184
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.656G>A
  hgvsp: ENSP00000381140.2:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.656G>A
  hgvsp: ENSP00000413906.1:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.656G>A
  hgvsp: ENSP00000291572.8:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.656G>A
  hgvsp: ENSP00000381135.1:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.656G>A
  hgvsp: ENSP00000443510.1:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3495G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.703G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.656G>A
  hgvsp: ENSP00000381138.1:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.656G>A
  hgvsp: ENSP00000414440.1:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.656G>A
  hgvsp: ENSP00000332989.2:p.Arg219Gln
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5621
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg219Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

21-45390681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390681
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390681
    reference: chr 21
allele count: 1
allele frequency: 8.863676653075696e-6
allele num: 112820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.658G>A
  hgvsp: ENSP00000413906.1:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.658G>A
  hgvsp: ENSP00000381140.2:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.658G>A
  hgvsp: ENSP00000332989.2:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3497G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.658G>A
  hgvsp: ENSP00000291572.8:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.658G>A
  hgvsp: ENSP00000414440.1:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.658G>A
  hgvsp: ENSP00000443510.1:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.658G>A
  hgvsp: ENSP00000381135.1:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.658G>A
  hgvsp: ENSP00000381138.1:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.705G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly220Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

21-45390682-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390682
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390682
    reference: chr 21
allele count: 3
allele frequency: 2.66018763190097e-5
allele num: 112774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.659G>T
  hgvsp: ENSP00000414440.1:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.659G>T
  hgvsp: ENSP00000443510.1:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.659G>T
  hgvsp: ENSP00000291572.8:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.706G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.659G>T
  hgvsp: ENSP00000381140.2:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.659G>T
  hgvsp: ENSP00000332989.2:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3498G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.659G>T
  hgvsp: ENSP00000381135.1:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.659G>T
  hgvsp: ENSP00000381138.1:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.659G>T
  hgvsp: ENSP00000413906.1:p.Gly220Val
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly220Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

21-45390697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390697
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390697
    reference: chr 21
allele count: 1
allele frequency: 9.078529278256922e-6
allele num: 110150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+10A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+10A>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

21-45390702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390702
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390702
    reference: chr 21
allele count: 3
allele frequency: 2.745241581259151e-5
allele num: 109280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+15G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+15G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

21-45390703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390703
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390703
    reference: chr 21
allele count: 1
allele frequency: 9.144780159484967e-6
allele num: 109352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+16C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+16C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-45390705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390705
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390705
    reference: chr 21
allele count: 5
allele frequency: 4.613993318937674e-5
allele num: 108366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+18C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13473
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

21-45390706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390706
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390706
    reference: chr 21
allele count: 206
allele frequency: 1.88897243567407e-3
allele num: 109054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+19G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 28488
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 6
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

21-45390709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390709
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390709
    reference: chr 21
allele count: 1
allele frequency: 9.233951392479869e-6
allele num: 108296
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+22C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

21-45390710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390710
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390710
    reference: chr 21
allele count: 3
allele frequency: 2.770134259173761e-5
allele num: 108298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+23C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

21-45390711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390711
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390711
    reference: chr 21
allele count: 2
allele frequency: 1.847745750184775e-5
allele num: 108240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+24G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

21-45390712-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390712
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390712
    reference: chr 21
allele count: 5
allele frequency: 4.617402064902203e-5
allele num: 108286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+25G>C
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

21-45390717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390717
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390717
    reference: chr 21
allele count: 1
allele frequency: 9.315670821455853e-6
allele num: 107346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+30A>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23161
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

21-45390719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390719
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390719
    reference: chr 21
allele count: 6
allele frequency: 5.619556055071649e-5
allele num: 106770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+32C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+32C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

21-45390720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390720
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390720
    reference: chr 21
allele count: 2
allele frequency: 1.878957554348847e-5
allele num: 106442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+33G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+33G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

21-45390731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390731
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390731
    reference: chr 21
allele count: 2
allele frequency: 2.056893679165724e-5
allele num: 97234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+44G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14379
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

21-45390737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390737
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390737
    reference: chr 21
allele count: 8992
allele frequency: 1.063085217062329e-1
allele num: 84584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+50T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+50T>C
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15942
  bin: 1.75e1
  variant carriers: 2600
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 7.5e0
  variant carriers: 924
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.5e0
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 2.75e1
  variant carriers: 1209
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 2.25e1
  variant carriers: 2099
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 1.25e1
  variant carriers: 1857
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5712
  bin: 7.5e0
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 1.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 1.75e1
  variant carriers: 79
num of homozygotes: 430
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

21-45390738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45390738
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45390738
    reference: chr 21
allele count: 4
allele frequency: 4.852837696843229e-5
allele num: 82426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.711+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3503+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.664+51A>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12224
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6013
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6925
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/21-45391218-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391218
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391218
    reference: chr 21
allele count: 1
allele frequency: 8.30675172780436e-6
allele num: 120384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-51A>C
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

21-45391219-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391219
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391219
    reference: chr 21
allele count: 1
allele frequency: 8.311446524153063e-6
allele num: 120316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-50C>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

21-45391221-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391221
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391221
    reference: chr 21
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-48A>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

21-45391224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391224
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391224
    reference: chr 21
allele count: 4
allele frequency: 3.324689141565264e-5
allele num: 120312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-45C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-45C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10503
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

21-45391228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391228
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391228
    reference: chr 21
allele count: 3
allele frequency: 2.491446035278876e-5
allele num: 120412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-41C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

21-45391229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391229
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391229
    reference: chr 21
allele count: 3
allele frequency: 2.491032283778398e-5
allele num: 120432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-40G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

21-45391237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391237
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391237
    reference: chr 21
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-32T>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-32T>C
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12110
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

21-45391243-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391243
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391243
    reference: chr 21
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-26A>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23930
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

21-45391245-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391245
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391245
    reference: chr 21
allele count: 10
allele frequency: 8.286514526259965e-5
allele num: 120678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-24T>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

21-45391254-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391254
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391254
    reference: chr 21
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-15C>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

21-45391254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391254
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391254
    reference: chr 21
allele count: 5
allele frequency: 4.137018037398643e-5
allele num: 120860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-15C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-15C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

21-45391255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391255
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391255
    reference: chr 21
allele count: 2482
allele frequency: 2.052494914245076e-2
allele num: 120926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-14G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 2.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 9.75e1
  variant carriers: 1628
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 3.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 4.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4327
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 116
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

21-45391255-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391255
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391255
    reference: chr 21
allele count: 2
allele frequency: 1.653904040487571e-5
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-14G>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/21-45391264-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391264
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391264
    reference: chr 21
allele count: 2
allele frequency: 1.651582215762701e-5
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-5C>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: c.665-5C>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

21-45391264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391264
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391264
    reference: chr 21
allele count: 7
allele frequency: 5.780537755169452e-5
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.712-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.665-5C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3504-5C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: c.665-5C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

21-45391270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391270
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391270
    reference: chr 21
allele count: 16
allele frequency: 1.320720453007115e-4
allele num: 121146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.666C>T
  hgvsp: ENST00000398058.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.666C>T
  hgvsp: ENST00000327505.2:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.666C>T
  hgvsp: ENST00000422850.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3505C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.713C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.666C>T
  hgvsp: ENST00000398063.2:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.666C>T
  hgvsp: ENST00000291572.8:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.666C>T
  hgvsp: ENST00000546158.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.666C>T
  hgvsp: ENST00000398061.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.666C>T
  hgvsp: ENST00000457068.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.666C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

21-45391271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391271
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391271
    reference: chr 21
allele count: 5
allele frequency: 4.127251415647236e-5
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.667G>A
  hgvsp: ENSP00000381138.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.667G>A
  hgvsp: ENSP00000443510.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.667G>A
  hgvsp: ENSP00000414440.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.714G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3506G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.667G>A
  hgvsp: ENSP00000381135.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.667G>A
  hgvsp: ENSP00000332989.2:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.667G>A
  hgvsp: ENSP00000291572.8:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.667G>A
  hgvsp: ENSP00000381140.2:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.667G>A
  hgvsp: ENSP00000413906.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala223Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

21-45391272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391272
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391272
    reference: chr 21
allele count: 2948
allele frequency: 2.432744677339495e-2
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.668C>T
  hgvsp: ENSP00000413906.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3507C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.668C>T
  hgvsp: ENSP00000332989.2:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.668C>T
  hgvsp: ENSP00000381138.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.715C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.668C>T
  hgvsp: ENSP00000381140.2:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.668C>T
  hgvsp: ENSP00000381135.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.668C>T
  hgvsp: ENSP00000414440.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.668C>T
  hgvsp: ENSP00000291572.8:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.668C>T
  hgvsp: ENSP00000443510.1:p.Ala223Val
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 9.75e1
  variant carriers: 2406
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 4.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 10371
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 4.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala223Val
num of homozygotes: 45
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

21-45391274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391274
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391274
    reference: chr 21
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.670G>A
  hgvsp: ENSP00000291572.8:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.670G>A
  hgvsp: ENSP00000414440.1:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.670G>A
  hgvsp: ENSP00000381135.1:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3509G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.670G>A
  hgvsp: ENSP00000381138.1:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.670G>A
  hgvsp: ENSP00000443510.1:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.670G>A
  hgvsp: ENSP00000413906.1:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.717G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.670G>A
  hgvsp: ENSP00000381140.2:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.670G>A
  hgvsp: ENSP00000332989.2:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala224Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

21-45391288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391288
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391288
    reference: chr 21
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.684A>G
  hgvsp: ENST00000457068.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.5A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.684A>G
  hgvsp: ENST00000327505.2:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.684A>G
  hgvsp: ENST00000398058.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.684A>G
  hgvsp: ENST00000398063.2:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.684A>G
  hgvsp: ENST00000398061.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.684A>G
  hgvsp: ENST00000422850.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.731A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.684A>G
  hgvsp: ENST00000291572.8:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.684A>G
  hgvsp: ENST00000546158.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3523A>G
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val228Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/21-45391310-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391310
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391310
    reference: chr 21
allele count: 12
allele frequency: 9.888099672044694e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.753A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.706A>C
  hgvsp: ENSP00000381138.1:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.706A>C
  hgvsp: ENSP00000443510.1:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.706A>C
  hgvsp: ENSP00000291572.8:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.706A>C
  hgvsp: ENSP00000381135.1:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.706A>C
  hgvsp: ENSP00000414440.1:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.27A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.706A>C
  hgvsp: ENSP00000332989.2:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.706A>C
  hgvsp: ENSP00000413906.1:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3545A>C
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.706A>C
  hgvsp: ENSP00000381140.2:p.Lys236Gln
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys236Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS

21-45391328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391328
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391328
    reference: chr 21
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.724G>A
  hgvsp: ENSP00000414440.1:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.724G>A
  hgvsp: ENSP00000443510.1:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.724G>A
  hgvsp: ENSP00000291572.8:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3563G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.724G>A
  hgvsp: ENSP00000381138.1:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.724G>A
  hgvsp: ENSP00000413906.1:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.724G>A
  hgvsp: ENSP00000381140.2:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.724G>A
  hgvsp: ENSP00000381135.1:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.45G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.771G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.724G>A
  hgvsp: ENSP00000332989.2:p.Gly242Arg
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly242Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

21-45391339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391339
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391339
    reference: chr 21
allele count: 14
allele frequency: 1.153478561777016e-4
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.735C>T
  hgvsp: ENST00000398058.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.735C>T
  hgvsp: ENST00000422850.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3574C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.735C>T
  hgvsp: ENST00000398061.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.735C>T
  hgvsp: ENST00000291572.8:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.735C>T
  hgvsp: ENST00000398063.2:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.56C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.735C>T
  hgvsp: ENST00000457068.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.735C>T
  hgvsp: ENST00000546158.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.782C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.735C>T
  hgvsp: ENST00000327505.2:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr245Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

21-45391340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391340
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391340
    reference: chr 21
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.736G>A
  hgvsp: ENSP00000381135.1:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.736G>A
  hgvsp: ENSP00000414440.1:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.57G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.736G>A
  hgvsp: ENSP00000332989.2:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.736G>A
  hgvsp: ENSP00000443510.1:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.736G>A
  hgvsp: ENSP00000381140.2:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.736G>A
  hgvsp: ENSP00000291572.8:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.783G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.736G>A
  hgvsp: ENSP00000413906.1:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3575G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.736G>A
  hgvsp: ENSP00000381138.1:p.Gly246Arg
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly246Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

21-45391344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391344
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391344
    reference: chr 21
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.740A>G
  hgvsp: ENSP00000332989.2:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.740A>G
  hgvsp: ENSP00000381140.2:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.740A>G
  hgvsp: ENSP00000414440.1:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.787A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.740A>G
  hgvsp: ENSP00000381138.1:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3579A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.61A>G
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.740A>G
  hgvsp: ENSP00000443510.1:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.740A>G
  hgvsp: ENSP00000291572.8:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.740A>G
  hgvsp: ENSP00000381135.1:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.740A>G
  hgvsp: ENSP00000413906.1:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys247Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

21-45391351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391351
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391351
    reference: chr 21
allele count: 7
allele frequency: 5.768628549766783e-5
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.747C>T
  hgvsp: ENST00000398063.2:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.747C>T
  hgvsp: ENST00000291572.8:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.747C>T
  hgvsp: ENST00000422850.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.747C>T
  hgvsp: ENST00000398058.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.747C>T
  hgvsp: ENST00000457068.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.68C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.747C>T
  hgvsp: ENST00000398061.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.747C>T
  hgvsp: ENST00000327505.2:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.794C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3586C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.747C>T
  hgvsp: ENST00000546158.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr249Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

21-45391352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391352
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391352
    reference: chr 21
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.748G>A
  hgvsp: ENSP00000414440.1:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.748G>A
  hgvsp: ENSP00000413906.1:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.795G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.748G>A
  hgvsp: ENSP00000332989.2:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.69G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.748G>A
  hgvsp: ENSP00000291572.8:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.748G>A
  hgvsp: ENSP00000381138.1:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.748G>A
  hgvsp: ENSP00000443510.1:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.748G>A
  hgvsp: ENSP00000381135.1:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3587G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.748G>A
  hgvsp: ENSP00000381140.2:p.Glu250Lys
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu250Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

21-45391356-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391356
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391356
    reference: chr 21
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.752C>T
  hgvsp: ENSP00000381135.1:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.752C>T
  hgvsp: ENSP00000414440.1:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.73C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3591C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.752C>T
  hgvsp: ENSP00000381138.1:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.752C>T
  hgvsp: ENSP00000381140.2:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.752C>T
  hgvsp: ENSP00000443510.1:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.752C>T
  hgvsp: ENSP00000413906.1:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.752C>T
  hgvsp: ENSP00000291572.8:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.752C>T
  hgvsp: ENSP00000332989.2:p.Ala251Val
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.799C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala251Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

21-45391357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391357
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391357
    reference: chr 21
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.753G>A
  hgvsp: ENST00000398058.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.753G>A
  hgvsp: ENST00000457068.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.753G>A
  hgvsp: ENST00000422850.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.753G>A
  hgvsp: ENST00000398061.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.74G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.753G>A
  hgvsp: ENST00000327505.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.753G>A
  hgvsp: ENST00000291572.8:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.753G>A
  hgvsp: ENST00000546158.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3592G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.800G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.753G>A
  hgvsp: ENST00000398063.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala251Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

21-45391366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391366
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391366
    reference: chr 21
allele count: 6
allele frequency: 4.946821667078902e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.762C>T
  hgvsp: ENST00000291572.8:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.83C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000413906
  ensembl transcript: ENST00000457068
  gene symbol: AGPAT3
  hgvsc: ENST00000457068.1:c.762C>T
  hgvsp: ENST00000457068.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.762C>T
  hgvsp: ENST00000398061.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.809C>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.762C>T
  hgvsp: ENST00000546158.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.762C>T
  hgvsp: ENST00000398058.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.762C>T
  hgvsp: ENST00000398063.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000414440
  ensembl transcript: ENST00000422850
  gene symbol: AGPAT3
  hgvsc: ENST00000422850.1:c.762C>T
  hgvsp: ENST00000422850.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.762C>T
  hgvsp: ENST00000327505.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3601C>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys254Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

21-45391377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391377
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391377
    reference: chr 21
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.767+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3606+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.767+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.767+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.814+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.88+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.767+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.767+6G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.767+6G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6053
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.767+6G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

21-45391389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391389
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391389
    reference: chr 21
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.767+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.814+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.767+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.88+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3606+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.767+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.767+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.767+18G>A
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.767+18G>A
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5929
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS

21-45391390-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45391390
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 45391390
    reference: chr 21
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381140
  ensembl transcript: ENST00000398063
  gene symbol: AGPAT3
  hgvsc: ENST00000398063.2:c.767+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000484865
  gene symbol: AGPAT3
  hgvsc: ENST00000484865.1:n.88+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000443510
  ensembl transcript: ENST00000546158
  gene symbol: AGPAT3
  hgvsc: ENST00000546158.1:c.767+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381135
  ensembl transcript: ENST00000398058
  gene symbol: AGPAT3
  hgvsc: ENST00000398058.1:c.767+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000479117
  gene symbol: AGPAT3
  hgvsc: ENST00000479117.1:n.814+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl transcript: ENST00000467358
  gene symbol: AGPAT3
  hgvsc: ENST00000467358.1:n.3606+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000291572
  ensembl transcript: ENST00000291572
  gene symbol: AGPAT3
  hgvsc: ENST00000291572.8:c.767+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000332989
  ensembl transcript: ENST00000327505
  gene symbol: AGPAT3
  hgvsc: ENST00000327505.2:c.767+19G>T
  variant of: http://identifiers.org/hgnc/326
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160216
  ensembl protein: ENSP00000381138
  ensembl transcript: ENST00000398061
  gene symbol: AGPAT3
  hgvsc: ENST00000398061.1:c.767+19G>T
  variant of: http://identifiers.org/hgnc/326
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513637877274241e-5
allele num: 66066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.454578e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.247e0

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.474e0

FS
type: SiteQuality
SIO_000300: 3.896e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 2.186e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 129

GenotypeQuality
all individuals: 206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.832396774981676e-4
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.691800736576855e-5
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.20471894517696e-4
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 1.82658052049997e-3
allele num: 66244
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.466532e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.265e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

GenotypeQuality
all individuals: 53116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.598e1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.315e-1

FS
type: SiteQuality
SIO_000300: 1.304e0

MQ
type: SiteQuality
SIO_000300: 5.857e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.466358e6

GenotypeQuality
all individuals: 5036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 1.466287e6

FS
type: SiteQuality
SIO_000300: 1.793e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
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SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.298e-1

ReadPosRankSum
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SIO_000300: -7.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.678e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 4.56e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -2.85e-1

ClippingRankSum
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SIO_000300: 4.58e-1

BaseQRankSum
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SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.467139e6

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015499668295036e-5
allele num: 66324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.379e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 1.467009e6

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 3.755e0

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 203
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variant carriers: 0

African
type: Population
allele count: 51
allele frequency: 4.928488596830306e-3
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015317814497648e-5
allele num: 66328
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

QD
type: SiteQuality
SIO_000300: 1.316e1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 1.469556e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

GenotypeQuality
all individuals: 1269
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515702679762338e-5
allele num: 65976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

FS
type: SiteQuality
SIO_000300: 3.369e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.454501e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.949e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.475006475006475e-5
allele num: 15444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.352e0

BaseQRankSum
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ReadPosRankSum
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SIO_000300: -7.09e-1

InbreedingCoeff
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ClippingRankSum
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MQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.041e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14912
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
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allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10282
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65456
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Other
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.734006734006734e-5
allele num: 14850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65424
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
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DP
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 2.22e-1

GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.888001102080176e-5
allele num: 14518
num of homozygotes: 0

East Asian
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allele count: 10
allele frequency: 1.162790697674419e-3
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531721961829489e-5
allele num: 65286
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.42206e6

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 14518
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.991238550378335e-4
allele num: 65286
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.302e1

DP
type: SiteQuality
SIO_000300: 1.42206e6

MQRankSum
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SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 5.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.196746707978312e-5
allele num: 64550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 3.073e0

QD
type: SiteQuality
SIO_000300: 1.159e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

DP
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SIO_000300: 1.392905e6

VQSLOD
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SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553277415346381e-5
allele num: 64380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

MQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.149e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 1.38729e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566121656330264e-5
allele num: 63852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

DP
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SIO_000300: 1.366248e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.448e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

QD
type: SiteQuality
SIO_000300: 1.549e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569858712715855e-5
allele num: 63700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.363173e6

FS
type: SiteQuality
SIO_000300: 1.1702e1

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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SIO_000300: 3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.851019062274283e-5
allele num: 63686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.021e0

ClippingRankSum
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573712703008939e-5
allele num: 63544
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.5e-3

FS
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ClippingRankSum
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SIO_000300: -7.23e-1

QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63526
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.625131256562828e-4
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.978e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.353273e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 7.99e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605084908991686e-5
allele num: 62302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 3.01e0

QD
type: SiteQuality
SIO_000300: 1.599e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.315189e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.586e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.846213491858361e-5
allele num: 61904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.305396e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
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FS
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SIO_000300: 0.0e0

QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.427e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.612487100103199e-5
allele num: 62016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.306172e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.115e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 1
allele frequency: 9.40910801656003e-5
allele num: 10628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.835483300936562e-5
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.878366072590087e-5
allele num: 61496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.431e0

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

QD
type: SiteQuality
SIO_000300: 1.589e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 1.994e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.301604e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 199

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.454051958123304e-4
allele num: 61896
num of homozygotes: 0

South Asian
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allele count: 193
allele frequency: 1.811866316184754e-2
allele num: 10652
num of homozygotes: 6

Latino
type: Population
allele count: 3
allele frequency: 2.646903123345686e-4
allele num: 11334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.285347043701799e-3
allele num: 778
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6444
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
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African
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.983e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 1
allele frequency: 1.295336787564767e-3
allele num: 772
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
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VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: -4.4e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.248968452516326e-5
allele num: 61558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.988e0

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.963e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 1.283642e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.817e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.49582643151775e-5
allele num: 61578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.278918e6

VQSLOD
type: SiteQuality
SIO_000300: -2.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.762e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 1.3506e1

QD
type: SiteQuality
SIO_000300: 7.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633239694257529e-5
allele num: 61228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.23055e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.589e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

VQSLOD
type: SiteQuality
SIO_000300: -5.348000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2946
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.92174426616793e-5
allele num: 60954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.085540599218411e-4
allele num: 9212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.780309773900659e-4
allele num: 11234
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.551e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.209177e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

GenotypeQuality
all individuals: 4281
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variant carriers: 0

GenotypeQuality
all individuals: 377
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 85
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.041232904674423e-4
allele num: 9798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.192029e6

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

FS
type: SiteQuality
SIO_000300: 5.276e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.42e0

MQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.513e0

GenotypeQuality
all individuals: 19116
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variant carriers: 0

GenotypeQuality
all individuals: 823
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.382654276864427e-4
allele num: 8394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 1.306e1

MQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

DP
type: SiteQuality
SIO_000300: 1.024558e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 111

GenotypeQuality
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variant carriers: 81

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7829
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variant carriers: 7777

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 150

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 134
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variant carriers: 91

GenotypeQuality
all individuals: 165
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variant carriers: 133

African
type: Population
allele count: 738
allele frequency: 1.115814938010281e-1
allele num: 6614
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 5969
allele frequency: 1.210308609432661e-1
allele num: 49318
num of homozygotes: 299

Other
type: Population
allele count: 72
allele frequency: 1.232876712328767e-1
allele num: 584
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 703
allele frequency: 1.333965844402277e-1
allele num: 5270
num of homozygotes: 50

Latino
type: Population
allele count: 532
allele frequency: 5.637982195845697e-2
allele num: 9436
num of homozygotes: 24

East Asian
type: Population
allele count: 289
allele frequency: 4.632895158704713e-2
allele num: 6238
num of homozygotes: 3

South Asian
type: Population
allele count: 689
allele frequency: 9.671532846715329e-2
allele num: 7124
num of homozygotes: 33

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 9.96996e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

QD
type: SiteQuality
SIO_000300: 1.605e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2618
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.700680272108843e-3
allele num: 588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.363001745200698e-4
allele num: 6876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47852
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

MQRankSum
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DP
type: SiteQuality
SIO_000300: 9.92538e5

GenotypeQuality
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GenotypeQuality
all individuals: 9781
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 741
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GenotypeQuality
all individuals: 4163
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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SIO_000300: 1.72e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
type: SiteQuality
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.879228263593084e-4
allele num: 15964
num of homozygotes: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.548e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.523113107981787e-5
allele num: 66326
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.64e-1

ReadPosRankSum
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MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 3.014954172696575e-5
allele num: 66336
num of homozygotes: 0

Latino
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allele num: 11564
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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Latino
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South Asian
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FS
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VQSLOD
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QD
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.169031462060457e-4
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.49e-1

QD
type: SiteQuality
SIO_000300: 2.084e1

VQSLOD
type: SiteQuality
SIO_000300: -1.587e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

FS
type: SiteQuality
SIO_000300: 1.538e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.055e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 2.6376e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 2.646522e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513314277117496e-5
allele num: 66470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.247e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

DP
type: SiteQuality
SIO_000300: 2.646522e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeQuality
all individuals: 170
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 24522
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variant carriers: 2342

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 4154
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variant carriers: 5

GenotypeQuality
all individuals: 12781
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 26
allele frequency: 2.247191011235955e-3
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 8.874048671900851e-4
allele num: 66486
num of homozygotes: 0

South Asian
type: Population
allele count: 1358
allele frequency: 8.305810397553517e-2
allele num: 16350
num of homozygotes: 72

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 253
allele frequency: 2.439259544928654e-2
allele num: 10372
num of homozygotes: 2

East Asian
type: Population
allele count: 775
allele frequency: 8.982382939267501e-2
allele num: 8628
num of homozygotes: 42

Other
type: Population
allele count: 11
allele frequency: 1.211453744493392e-2
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

DP
type: SiteQuality
SIO_000300: 2.765108e6

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5488
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24522
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116207951070337e-5
allele num: 16350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

QD
type: SiteQuality
SIO_000300: 1.343e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

DP
type: SiteQuality
SIO_000300: 2.765108e6

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 77
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.849e0

MQRankSum
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SIO_000300: 8.599999999999999e-2

QD
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ClippingRankSum
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SIO_000300: -4.37e-1

VQSLOD
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SIO_000300: 2.46e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

DP
type: SiteQuality
SIO_000300: 2.564897e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.184929139301763e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.167e0

MQRankSum
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SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
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SIO_000300: 9.12e-1

ClippingRankSum
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SIO_000300: -4.37e-1

VQSLOD
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MQ
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SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.564897e6

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.849e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22831
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.888503755054881e-4
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.428953121204761e-4
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201923076923077e-4
allele num: 66560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.481e0

FS
type: SiteQuality
SIO_000300: 1.153e0

ClippingRankSum
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SIO_000300: -4.26e-1

MQ
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SIO_000300: 5.961e1

VQSLOD
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SIO_000300: 1.84e0

MQRankSum
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SIO_000300: 5.1e-2

DP
type: SiteQuality
SIO_000300: 2.566628e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.243e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeDepth
all individuals: 274
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2269
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 5833
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.852822192255828e-4
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 2.565941e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

FS
type: SiteQuality
SIO_000300: 1.164e0

GenotypeQuality
all individuals: 4311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 2595
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3973
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13815
bin: 6.25e1
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GenotypeQuality
all individuals: 23234
bin: 9.75e1
variant carriers: 2902

GenotypeQuality
all individuals: 4451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2138
allele frequency: 3.210692296140562e-2
allele num: 66590
num of homozygotes: 36

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.466204506065858e-3
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 141
allele frequency: 1.21866897147796e-2
allele num: 11570
num of homozygotes: 1

Other
type: Population
allele count: 19
allele frequency: 2.092511013215859e-2
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 337
allele frequency: 2.045647687264781e-2
allele num: 16474
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 275
allele frequency: 4.159104658197217e-2
allele num: 6612
num of homozygotes: 6

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.491e0

FS
type: SiteQuality
SIO_000300: 1.153e0

QD
type: SiteQuality
SIO_000300: 1.189e1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 2.781163e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 4189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 14508
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21336
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.97e-1

FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 2.43191e6

MQRankSum
type: SiteQuality
SIO_000300: -1.378e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.939e0

VQSLOD
type: SiteQuality
SIO_000300: -9.102e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeDepth
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21335
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2729
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4710
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 2.433427e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

QD
type: SiteQuality
SIO_000300: 1.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

GenotypeDepth
all individuals: 405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21335
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 4705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4190
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.036627505183138e-3
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.435283e6

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 266
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6094
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 2363
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 14716
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.43393e6

QD
type: SiteQuality
SIO_000300: 1.264e1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

FS
type: SiteQuality
SIO_000300: 1.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.515e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeDepth
all individuals: 273
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 21318
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4536
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.450581395348837e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99610253335332e-5
allele num: 66710
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

DP
type: SiteQuality
SIO_000300: 2.434274e6

FS
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeDepth
all individuals: 1080
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21308
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2364
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.998141152485459e-5
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num of homozygotes: 0

East Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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VQSLOD
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QD
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FS
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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African
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66690
num of homozygotes: 0

Latino
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East Asian
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Other
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African
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European (Finnish)
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South Asian
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FS
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ClippingRankSum
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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Latino
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South Asian
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African
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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MQRankSum
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FS
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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Latino
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Other
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European (Finnish)
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Latino
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East Asian
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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Latino
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European (Finnish)
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.48e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.018e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 2.416715e6

FS
type: SiteQuality
SIO_000300: 0.0e0