X-100117807-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100117807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100117807
    reference: chr 0
allele count: 78
allele frequency: 8.949264554028316e-4
allele num: 87158
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.340A>G
  hgvsp: ENSP00000362057.3:p.Ile114Val
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.340A>G
  hgvsp: ENSP00000217885.5:p.Ile114Val
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.229A>G
  hgvsp: ENSP00000362051.4:p.Ile77Val
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.340A>G
  hgvsp: ENSP00000362055.1:p.Ile114Val
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile114Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-100117818-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100117818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100117818
    reference: chr 0
allele count: 2
allele frequency: 2.298190175237001e-5
allele num: 87025
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.227-9T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.338-9T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.338-9T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.338-9T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-100117836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100117836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100117836
    reference: chr 0
allele count: 1
allele frequency: 1.151994101790199e-5
allele num: 86806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.338-27A>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.227-27A>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.338-27A>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.338-27A>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-100117837-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100117837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100117837
    reference: chr 0
allele count: 1
allele frequency: 1.152126826121019e-5
allele num: 86796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.338-28T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.227-28T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.338-28T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.338-28T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2875
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num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

X-100117841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100117841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100117841
    reference: chr 0
allele count: 1
allele frequency: 1.152711176687569e-5
allele num: 86752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.338-32C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.338-32C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.227-32C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.338-32C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

X-100117842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100117842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100117842
    reference: chr 0
allele count: 1
allele frequency: 1.153096641029485e-5
allele num: 86723
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.227-33C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.338-33C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.338-33C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.338-33C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-100118106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118106
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118106
    reference: chr 0
allele count: 1
allele frequency: 1.141917507879231e-5
allele num: 87572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.337+42C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.337+42C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.226+42C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.337+42C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-100118111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118111
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118111
    reference: chr 0
allele count: 10
allele frequency: 1.142152271740869e-4
allele num: 87554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.226+37G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.337+37G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.337+37G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.337+37G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-100118122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118122
    reference: chr 0
allele count: 2
allele frequency: 2.282479685930795e-5
allele num: 87624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.337+26C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.226+26C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.337+26C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.337+26C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29803
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-100118129-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118129
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118129
    reference: chr 0
allele count: 1
allele frequency: 1.140927345746623e-5
allele num: 87648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.226+19G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.337+19G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.337+19G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.337+19G>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1405
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13044
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genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

X-100118131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118131
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118131
    reference: chr 0
allele count: 1
allele frequency: 1.140719109326519e-5
allele num: 87664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.337+17A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.337+17A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.337+17A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.226+17A>G
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4796
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  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

X-100118158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118158
    reference: chr 0
allele count: 1
allele frequency: 1.139744013494569e-5
allele num: 87739
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.327C>T
  hgvsp: ENST00000372966.3:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.327C>T
  hgvsp: ENST00000372964.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.327C>T
  hgvsp: ENST00000217885.5:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.216C>T
  hgvsp: ENST00000372960.4:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
hgvs: p.Cys109Cys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-100118159-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118159
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118159
    reference: chr 0
allele count: 1
allele frequency: 1.139744013494569e-5
allele num: 87739
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.326G>T
  hgvsp: ENSP00000217885.5:p.Cys109Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.326G>T
  hgvsp: ENSP00000362055.1:p.Cys109Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.215G>T
  hgvsp: ENSP00000362051.4:p.Cys72Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.326G>T
  hgvsp: ENSP00000362057.3:p.Cys109Phe
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29803
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genotype quality: GenotypeQuality
  all individuals: 4833
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys109Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-100118159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118159
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118159
    reference: chr 0
allele count: 2
allele frequency: 2.279488026989138e-5
allele num: 87739
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.326G>A
  hgvsp: ENSP00000362055.1:p.Cys109Tyr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.326G>A
  hgvsp: ENSP00000362057.3:p.Cys109Tyr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.215G>A
  hgvsp: ENSP00000362051.4:p.Cys72Tyr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.326G>A
  hgvsp: ENSP00000217885.5:p.Cys109Tyr
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
hgvs: p.Cys109Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-100118170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118170
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118170
    reference: chr 0
allele count: 2
allele frequency: 2.279280203311794e-5
allele num: 87747
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.315C>T
  hgvsp: ENST00000217885.5:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.315C>T
  hgvsp: ENST00000372964.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.315C>T
  hgvsp: ENST00000372966.3:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.204C>T
  hgvsp: ENST00000372960.4:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
hgvs: p.Ala105Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

X-100118176-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118176
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118176
    reference: chr 0
allele count: 2
allele frequency: 2.279254228016593e-5
allele num: 87748
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.309G>C
  hgvsp: ENST00000372966.3:c.309G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.198G>C
  hgvsp: ENST00000372960.4:c.198G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.309G>C
  hgvsp: ENST00000372964.1:c.309G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.309G>C
  hgvsp: ENST00000217885.5:c.309G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu103Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-100118189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118189
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118189
    reference: chr 0
allele count: 2
allele frequency: 2.279254228016593e-5
allele num: 87748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.296C>T
  hgvsp: ENSP00000217885.5:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.296C>T
  hgvsp: ENSP00000362057.3:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.185C>T
  hgvsp: ENSP00000362051.4:p.Thr62Ile
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.296C>T
  hgvsp: ENSP00000362055.1:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29798
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr99Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-100118190-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118190
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.184A>C
  hgvsp: ENSP00000362051.4:p.Thr62Pro
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.295A>C
  hgvsp: ENSP00000217885.5:p.Thr99Pro
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.295A>C
  hgvsp: ENSP00000362057.3:p.Thr99Pro
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.295A>C
  hgvsp: ENSP00000362055.1:p.Thr99Pro
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2405
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
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genotype quality: GenotypeQuality
  all individuals: 2497
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
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genotype quality: GenotypeQuality
  all individuals: 2166
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr99Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

X-100118196-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118196
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118196
    reference: chr 0
allele count: 1
allele frequency: 1.139653089599526e-5
allele num: 87746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.289A>C
  hgvsp: ENSP00000362055.1:p.Asn97His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.289A>C
  hgvsp: ENSP00000217885.5:p.Asn97His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.289A>C
  hgvsp: ENSP00000362057.3:p.Asn97His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.178A>C
  hgvsp: ENSP00000362051.4:p.Asn60His
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn97His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

X-100118217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118217
    reference: chr 0
allele count: 30
allele frequency: 3.419426904050881e-4
allele num: 87734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.157C>T
  hgvsp: ENST00000372960.4:c.157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.268C>T
  hgvsp: ENST00000372964.1:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.268C>T
  hgvsp: ENST00000372966.3:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.268C>T
  hgvsp: ENST00000217885.5:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4209
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  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 52
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1902
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1576
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu90Leu
num of homozygotes: 1
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

X-100118222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118222
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118222
    reference: chr 0
allele count: 21
allele frequency: 2.393680682996888e-4
allele num: 87731
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.263G>A
  hgvsp: ENSP00000362057.3:p.Arg88His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.263G>A
  hgvsp: ENSP00000362055.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.152G>A
  hgvsp: ENSP00000362051.4:p.Arg51His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.263G>A
  hgvsp: ENSP00000217885.5:p.Arg88His
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg88His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-100118223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118223
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118223
    reference: chr 0
allele count: 2
allele frequency: 2.27966990379793e-5
allele num: 87732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.262C>T
  hgvsp: ENSP00000362055.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.262C>T
  hgvsp: ENSP00000362057.3:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.151C>T
  hgvsp: ENSP00000362051.4:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.262C>T
  hgvsp: ENSP00000217885.5:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg88Cys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-100118244-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118244
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118244
    reference: chr 0
allele count: 5
allele frequency: 5.70203448590457e-5
allele num: 87688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.253-12C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.253-12C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-12C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.253-12C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

X-100118253-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118253
    reference: chr 0
allele count: 106
allele frequency: 1.209355390758699e-3
allele num: 87650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-21A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.253-21A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.253-21A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.253-21A>G
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4429
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

X-100118264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118264
    reference: chr 0
allele count: 1
allele frequency: 1.141982710381765e-5
allele num: 87567
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.253-32G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.253-32G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-32G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.253-32G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

X-100118265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118265
    reference: chr 0
allele count: 2
allele frequency: 2.284069755490333e-5
allele num: 87563
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.253-33C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.253-33C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-33C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
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  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.253-33C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
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X-100118265-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118265
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118265
    reference: chr 0
allele count: 1
allele frequency: 1.142034877745166e-5
allele num: 87563
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.253-33C>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.253-33C>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000007952
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  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
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  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-33C>G
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
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X-100118281-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118281
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118281
    reference: chr 0
allele count: 1
allele frequency: 1.144099307819919e-5
allele num: 87405
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
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  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
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  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-49T>G
  variant of: http://identifiers.org/hgnc/7889
canonical: true
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filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
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site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

X-100118431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118431
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118431
    reference: chr 0
allele count: 1
allele frequency: 1.296193080921334e-5
allele num: 77149
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.252+43G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-199G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
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  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
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  gene symbol: NOX1
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  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-100118455-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118455
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 79634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-223T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.252+19T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.252+19T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.252+19T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-100118475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118475
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118475
    reference: chr 0
allele count: 10
allele frequency: 1.205545509342978e-4
allele num: 82950
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.251C>T
  hgvsp: ENSP00000362057.3:p.Ser84Leu
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.251C>T
  hgvsp: ENSP00000217885.5:p.Ser84Leu
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-243C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.251C>T
  hgvsp: ENSP00000362055.1:p.Ser84Leu
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 317
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  variant carriers: 0
hgvs: p.Ser84Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

X-100118489-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118489
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118489
    reference: chr 0
allele count: 3
allele frequency: 3.561422669642433e-5
allele num: 84236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.237G>C
  hgvsp: ENST00000372966.3:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.237G>C
  hgvsp: ENST00000372964.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-257G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.237G>C
  hgvsp: ENST00000217885.5:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 589
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  variant carriers: 0
hgvs: p.Leu79Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-100118496-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118496
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118496
    reference: chr 0
allele count: 3
allele frequency: 3.546895874960098e-5
allele num: 84581
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.230C>A
  hgvsp: ENSP00000362057.3:p.Ser77Tyr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.230C>A
  hgvsp: ENSP00000362055.1:p.Ser77Tyr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-264C>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.230C>A
  hgvsp: ENSP00000217885.5:p.Ser77Tyr
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser77Tyr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-100118498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118498
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118498
    reference: chr 0
allele count: 5
allele frequency: 5.912262031453234e-5
allele num: 84570
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.228G>A
  hgvsp: ENST00000372966.3:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.228G>A
  hgvsp: ENST00000372964.1:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.228G>A
  hgvsp: ENST00000217885.5:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-266G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu76Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-100118508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118508
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118508
    reference: chr 0
allele count: 1
allele frequency: 1.185269471014235e-5
allele num: 84369
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.218G>A
  hgvsp: ENSP00000362057.3:p.Arg73His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-276G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.218G>A
  hgvsp: ENSP00000217885.5:p.Arg73His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.218G>A
  hgvsp: ENSP00000362055.1:p.Arg73His
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg73His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
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site quality: BaseQRankSum

X-100118532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118532
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118532
    reference: chr 0
allele count: 5
allele frequency: 6.050192396118197e-5
allele num: 82642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.194C>T
  hgvsp: ENSP00000217885.5:p.Thr65Met
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-300C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.194C>T
  hgvsp: ENSP00000362055.1:p.Thr65Met
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.194C>T
  hgvsp: ENSP00000362057.3:p.Thr65Met
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr65Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

X-100118539-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118539
    reference: chr 0
allele count: 1
allele frequency: 1.224829748664936e-5
allele num: 81644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.187A>C
  hgvsp: ENSP00000362055.1:p.Asn63His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.187A>C
  hgvsp: ENSP00000362057.3:p.Asn63His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-307A>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.187A>C
  hgvsp: ENSP00000217885.5:p.Asn63His
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asn63His
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
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site quality: ReadPosRankSum

X-100118559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118559
    reference: chr 0
allele count: 1
allele frequency: 1.312542657636373e-5
allele num: 76188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.167C>T
  hgvsp: ENSP00000362055.1:p.Ser56Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.167C>T
  hgvsp: ENSP00000362057.3:p.Ser56Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.167C>T
  hgvsp: ENSP00000217885.5:p.Ser56Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
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  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-327C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser56Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-100118561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118561
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118561
    reference: chr 0
allele count: 1
allele frequency: 1.327562860101426e-5
allele num: 75326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.165G>A
  hgvsp: ENST00000217885.5:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.165G>A
  hgvsp: ENST00000372964.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-329G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.165G>A
  hgvsp: ENST00000372966.3:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala55Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
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site quality: MQRankSum

X-100118562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118562
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118562
    reference: chr 0
allele count: 7
allele frequency: 9.304180235262843e-5
allele num: 75235
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.164C>T
  hgvsp: ENSP00000362055.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.164C>T
  hgvsp: ENSP00000362057.3:p.Ala55Val
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-330C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.164C>T
  hgvsp: ENSP00000217885.5:p.Ala55Val
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.Ala55Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
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X-100118565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118565
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118565
    reference: chr 0
allele count: 1
allele frequency: 1.35369287416071e-5
allele num: 73872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-333G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.161G>A
  hgvsp: ENSP00000217885.5:p.Arg54Gln
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
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  hgvsp: ENSP00000362057.3:p.Arg54Gln
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
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  hgvsp: ENSP00000362055.1:p.Arg54Gln
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg54Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-100118566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118566
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118566
    reference: chr 0
allele count: 5
allele frequency: 6.780580417683754e-5
allele num: 73740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.160C>T
  hgvsp: ENSP00000217885.5:p.Arg54Ter
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-334C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.160C>T
  hgvsp: ENSP00000362057.3:p.Arg54Ter
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.160C>T
  hgvsp: ENSP00000362055.1:p.Arg54Ter
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg54Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

X-100118570-A-ATTCAGAAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118578
    reference: chr 0
allele count: 3
allele frequency: 4.156275976724854e-5
allele num: 72180
alternate allele: ATTCAGAAT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.155_156insATTCTGAA
  hgvsp: ENSP00000217885.5:p.Cys52Ter
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.155_156insATTCTGAA
  hgvsp: ENSP00000362057.3:p.Cys52Ter
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.155_156insATTCTGAA
  hgvsp: ENSP00000362055.1:p.Cys52Ter
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 79
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  variant carriers: 0
hgvs: p.Cys52Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

X-100118572-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118572
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118572
    reference: chr 0
allele count: 1
allele frequency: 1.407816195517513e-5
allele num: 71032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-340T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.154T>C
  hgvsp: ENSP00000362055.1:p.Cys52Arg
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.154T>C
  hgvsp: ENSP00000217885.5:p.Cys52Arg
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.154T>C
  hgvsp: ENSP00000362057.3:p.Cys52Arg
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11591
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Cys52Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

X-100118578-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118578
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118578
    reference: chr 0
allele count: 1
allele frequency: 1.465587993903154e-5
allele num: 68232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-346T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.148T>C
  hgvsp: ENST00000372966.3:c.148T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.148T>C
  hgvsp: ENST00000372964.1:c.148T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.148T>C
  hgvsp: ENST00000217885.5:c.148T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14827
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu50Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

X-100118581-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118581
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118581
    reference: chr 0
allele count: 1
allele frequency: 1.514830187535977e-5
allele num: 66014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-349A>G
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.145A>G
  hgvsp: ENSP00000217885.5:p.Thr49Ala
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.145A>G
  hgvsp: ENSP00000362055.1:p.Thr49Ala
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.145A>G
  hgvsp: ENSP00000362057.3:p.Thr49Ala
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr49Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-100118588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118588
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118588
    reference: chr 0
allele count: 46
allele frequency: 7.563052842721384e-4
allele num: 60822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-4G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.142-4G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-356G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.142-4G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.142-4G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-100118591-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118591
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118591
    reference: chr 0
allele count: 1
allele frequency: 1.707417019532851e-5
allele num: 58568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-359G>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.142-7G>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-7G>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.142-7G>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.142-7G>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
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X-100118597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118597
    reference: chr 0
allele count: 1
allele frequency: 1.843080155555965e-5
allele num: 54257
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.142-13T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-13T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.142-13T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
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  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-365T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-100118607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118607
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118607
    reference: chr 0
allele count: 2
allele frequency: 4.273230348481935e-5
allele num: 46803
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-375T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-23T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
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  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.142-23T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
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  gene symbol: NOX1
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  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
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site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
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site quality: QD

X-100118608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118608
    reference: chr 0
allele count: 1
allele frequency: 2.219361711571752e-5
allele num: 45058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
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  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-376G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.142-24G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/7889
canonical: true
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filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
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X-100118610-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118610
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118610
    reference: chr 0
allele count: 1
allele frequency: 2.262341070539795e-5
allele num: 44202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-378T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-26T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
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  ensembl gene: ENSG00000007952
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  gene symbol: NOX1
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  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
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  gene symbol: NOX1
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  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
population: European (Finnish)
population: Latino
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population: European (Non-Finnish)
population: South Asian
population: Other
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site quality: VQSLOD
site quality: InbreedingCoeff
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site quality: MQ
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X-100118628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118628
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118628
    reference: chr 0
allele count: 2
allele frequency: 6.594566077552098e-5
allele num: 30328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-396G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
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  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-44G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/7889
canonical: true
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genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-100118636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100118636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100118636
    reference: chr 0
allele count: 3
allele frequency: 1.141118295930011e-4
allele num: 26290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.142-52G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.142-52G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.142-404G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.142-52G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24304
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 135
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 467
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

X-100125668-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125668
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125668
    reference: chr 0
allele count: 141
allele frequency: 1.611041921367443e-3
allele num: 87521
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+40T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+40T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+40T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+40T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 189
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  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 275
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3722
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
num of homozygotes: 2
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-100125670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125670
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125670
    reference: chr 0
allele count: 1
allele frequency: 1.142413233714899e-5
allele num: 87534
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+38T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+38T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+38T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+38T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-100125671-C-CTAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125674
    reference: chr 0
allele count: 24
allele frequency: 2.741541203079665e-4
allele num: 87542
alternate allele: CTAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+36_141+37insATA
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+36_141+37insATA
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+36_141+37insATA
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+36_141+37insATA
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 93
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

X-100125671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125671
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125671
    reference: chr 0
allele count: 1
allele frequency: 1.142308834616527e-5
allele num: 87542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+37G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+37G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+37G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+37G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

X-100125678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125678
    reference: chr 0
allele count: 2
allele frequency: 2.284617669233054e-5
allele num: 87542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+30C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+30C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+30C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+30C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-100125679-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125679
    reference: chr 0
allele count: 1
allele frequency: 1.142334932602239e-5
allele num: 87540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+29T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+29T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+29T>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+29T>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-100125687-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125687
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87553
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+21G>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+21G>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+21G>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+21G>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-100125687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125687
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125687
    reference: chr 0
allele count: 1
allele frequency: 1.142165317007984e-5
allele num: 87553
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+21G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+21G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+21G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+21G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-100125688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125688
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125688
    reference: chr 0
allele count: 1
allele frequency: 1.142165317007984e-5
allele num: 87553
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+20C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+20C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+20C>T
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+20C>T
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-100125696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125696
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125696
    reference: chr 0
allele count: 4
allele frequency: 4.568452550909693e-5
allele num: 87557
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+12G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+12G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+12G>A
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
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  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+12G>A
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
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X-100125703-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125703
    reference: chr 0
allele count: 29
allele frequency: 3.311901145460982e-4
allele num: 87563
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141+5G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141+5G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141+5G>C
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141+5G>C
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.141+5G>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-100125708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125708
    reference: chr 0
allele count: 1
allele frequency: 1.142113137727423e-5
allele num: 87557
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.141G>A
  hgvsp: ENST00000372964.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.141G>A
  hgvsp: ENST00000372966.3:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.141G>A
  hgvsp: ENST00000372960.4:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.141G>A
  hgvsp: ENST00000217885.5:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 407
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genotype depth: GenotypeDepth
  all individuals: 15481
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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genotype quality: GenotypeQuality
  all individuals: 1869
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genotype quality: GenotypeQuality
  all individuals: 27
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29606
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
hgvs: c.141G>A
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-100125713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125713
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125713
    reference: chr 0
allele count: 2
allele frequency: 2.28396542076353e-5
allele num: 87567
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.136C>T
  hgvsp: ENSP00000362057.3:p.Leu46Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.136C>T
  hgvsp: ENSP00000362051.4:p.Leu46Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.136C>T
  hgvsp: ENSP00000362055.1:p.Leu46Phe
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.136C>T
  hgvsp: ENSP00000217885.5:p.Leu46Phe
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
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genotype depth: GenotypeDepth
  all individuals: 3569
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6587
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3713
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Leu46Phe
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

X-100125721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125721
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125721
    reference: chr 0
allele count: 3
allele frequency: 3.426652503169654e-5
allele num: 87549
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.128G>A
  hgvsp: ENSP00000362055.1:p.Arg43Lys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.128G>A
  hgvsp: ENSP00000217885.5:p.Arg43Lys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.128G>A
  hgvsp: ENSP00000362057.3:p.Arg43Lys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.128G>A
  hgvsp: ENSP00000362051.4:p.Arg43Lys
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 15486
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2709
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genotype quality: GenotypeQuality
  all individuals: 2955
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  variant carriers: 0
hgvs: p.Arg43Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-100125731-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125731
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125731
    reference: chr 0
allele count: 1
allele frequency: 1.142517651897722e-5
allele num: 87526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.118T>C
  hgvsp: ENSP00000217885.5:p.Tyr40His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.118T>C
  hgvsp: ENSP00000362055.1:p.Tyr40His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.118T>C
  hgvsp: ENSP00000362057.3:p.Tyr40His
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.118T>C
  hgvsp: ENSP00000362051.4:p.Tyr40His
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
hgvs: p.Tyr40His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-100125740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125740
    reference: chr 0
allele count: 13
allele frequency: 1.485952038040372e-4
allele num: 87486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.109G>A
  hgvsp: ENSP00000217885.5:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.109G>A
  hgvsp: ENSP00000362051.4:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.109G>A
  hgvsp: ENSP00000362055.1:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.109G>A
  hgvsp: ENSP00000362057.3:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
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genotype depth: GenotypeDepth
  all individuals: 134
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1868
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9267
  bin: 9.75e1
  variant carriers: 13
hgvs: p.Asp37Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-100125741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125741
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125741
    reference: chr 0
allele count: 1
allele frequency: 1.143157630005601e-5
allele num: 87477
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.108C>T
  hgvsp: ENST00000372966.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.108C>T
  hgvsp: ENST00000372964.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.108C>T
  hgvsp: ENST00000372960.4:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.108C>T
  hgvsp: ENST00000217885.5:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1867
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genotype quality: GenotypeQuality
  all individuals: 9256
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala36Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-100125743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125743
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125743
    reference: chr 0
allele count: 1
allele frequency: 1.143249113981937e-5
allele num: 87470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.106G>A
  hgvsp: ENSP00000217885.5:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.106G>A
  hgvsp: ENSP00000362055.1:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.106G>A
  hgvsp: ENSP00000362057.3:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.106G>A
  hgvsp: ENSP00000362051.4:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala36Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-100125747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125747
    reference: chr 0
allele count: 1
allele frequency: 1.143654433376411e-5
allele num: 87439
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.102G>C
  hgvsp: ENSP00000362055.1:p.Glu34Asp
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.102G>C
  hgvsp: ENSP00000362051.4:p.Glu34Asp
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.102G>C
  hgvsp: ENSP00000217885.5:p.Glu34Asp
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.102G>C
  hgvsp: ENSP00000362057.3:p.Glu34Asp
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2703
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu34Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-100125747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125747
    reference: chr 0
allele count: 1
allele frequency: 1.143654433376411e-5
allele num: 87439
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.102G>A
  hgvsp: ENST00000372960.4:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.102G>A
  hgvsp: ENST00000372964.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.102G>A
  hgvsp: ENST00000217885.5:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.102G>A
  hgvsp: ENST00000372966.3:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu34Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-100125749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125749
    reference: chr 0
allele count: 1
allele frequency: 1.143889912034866e-5
allele num: 87421
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.100G>A
  hgvsp: ENSP00000217885.5:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.100G>A
  hgvsp: ENSP00000362055.1:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.100G>A
  hgvsp: ENSP00000362057.3:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.100G>A
  hgvsp: ENSP00000362051.4:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9252
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu34Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-100125770-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24100125770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24100125770
    reference: chr 0
allele count: 1
allele frequency: 1.146526026140793e-5
allele num: 87220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362057
  ensembl transcript: ENST00000372966
  gene symbol: NOX1
  hgvsc: ENST00000372966.3:c.79G>T
  hgvsp: ENSP00000362057.3:p.Val27Leu
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000217885
  ensembl transcript: ENST00000217885
  gene symbol: NOX1
  hgvsc: ENST00000217885.5:c.79G>T
  hgvsp: ENSP00000217885.5:p.Val27Leu
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362051
  ensembl transcript: ENST00000372960
  gene symbol: NOX1
  hgvsc: ENST00000372960.4:c.79G>T
  hgvsp: ENSP00000362051.4:p.Val27Leu
  variant of: http://identifiers.org/hgnc/7889
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007952
  ensembl protein: ENSP00000362055
  ensembl transcript: ENST00000372964
  gene symbol: NOX1
  hgvsc: ENST00000372964.1:c.79G>T
  hgvsp: ENSP00000362055.1:p.Val27Leu
  variant of: http://identifiers.org/hgnc/7889
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val27Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.937394415184339e-5
allele num: 10063
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097755401720159e-5
allele num: 47670
num of homozygotes: 0

African
type: Population
allele count: 74
allele frequency: 8.846383741781231e-3
allele num: 8365
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076426264800861e-4
allele num: 9290
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.092e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.92e0

DP
type: SiteQuality
SIO_000300: 2.570834e6

QD
type: SiteQuality
SIO_000300: 1.995e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 7.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100928610445817e-5
allele num: 47598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.199184554502938e-4
allele num: 8339
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.654e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.998e1

VQSLOD
type: SiteQuality
SIO_000300: -1.209e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

DP
type: SiteQuality
SIO_000300: 2.561482e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4646
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47499
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514921981517952e-4
allele num: 6601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10013
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

DP
type: SiteQuality
SIO_000300: 2.548251e6

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.32e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.65e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 27713
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10011
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.871e1

DP
type: SiteQuality
SIO_000300: 2.547138e6

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 1.296e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e0

VQSLOD
type: SiteQuality
SIO_000300: -7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.722e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8271
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.996001599360256e-5
allele num: 10004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47467
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.978e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.5412e6

QD
type: SiteQuality
SIO_000300: 3.303e1

GenotypeQuality
all individuals: 774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.209921355111918e-4
allele num: 8265
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10001
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47453
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.023e0

QD
type: SiteQuality
SIO_000300: 1.43e1

FS
type: SiteQuality
SIO_000300: 3.802e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.538255e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.00130169219986e-4
allele num: 9987
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.15e-1

FS
type: SiteQuality
SIO_000300: 8.98e-1

DP
type: SiteQuality
SIO_000300: 3.000528e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.737e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
all individuals: 2148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.506477854775535e-3
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9975
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.324e0

VQSLOD
type: SiteQuality
SIO_000300: -1.399e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.068e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

DP
type: SiteQuality
SIO_000300: 3.003079e6

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12774
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10027
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.170141784820684e-5
allele num: 47960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 2.179e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 3.008344e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2920
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084853539038883e-5
allele num: 47965
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.28e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.011476e6

QD
type: SiteQuality
SIO_000300: 3.095e1

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07284626113078e-4
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47969
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10059
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -3.567e-1

QD
type: SiteQuality
SIO_000300: 1.376e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 3.012065e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2496
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GenotypeQuality
all individuals: 1410
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084071441969031e-5
allele num: 47983
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 3.017225e6

QD
type: SiteQuality
SIO_000300: 2.703e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084071441969031e-5
allele num: 47983
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

FS
type: SiteQuality
SIO_000300: 1.2126e1

DP
type: SiteQuality
SIO_000300: 3.017303e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.037e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 3.439e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.168142883938061e-5
allele num: 47983
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.037e-1

DP
type: SiteQuality
SIO_000300: 3.017303e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 3.439e1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 1.2126e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.16770859381512e-5
allele num: 47988
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.162e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.493e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.017308e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 3.295e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 3.01295570955107e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47988
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.539e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 1.984e1

DP
type: SiteQuality
SIO_000300: 3.017272e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.167534903104813e-5
allele num: 47990
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.017233e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.022e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.696e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.30865e2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.729e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.879470460383324e-5
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47990
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.016611e6

VQSLOD
type: SiteQuality
SIO_000300: 1.013e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.787e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.347e1

GenotypeQuality
all individuals: 3350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47984
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 2.964719833975689e-3
allele num: 10119
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

DP
type: SiteQuality
SIO_000300: 3.016776e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.886e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.542e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

QD
type: SiteQuality
SIO_000300: 2.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.128e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 21

East Asian
type: Population
allele count: 20
allele frequency: 3.01295570955107e-3
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47983
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.132e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.832e-1

QD
type: SiteQuality
SIO_000300: 1.597e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.015474e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

GenotypeQuality
all individuals: 3344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2916
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084071441969031e-5
allele num: 47983
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 3.013265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.409999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.851e1

VQSLOD
type: SiteQuality
SIO_000300: -6.036e-1

MQ
type: SiteQuality
SIO_000300: 5.758e1

FS
type: SiteQuality
SIO_000300: 6.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.351e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.699800258489014e-4
allele num: 8511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.031e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 3.008586e6

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 2494
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 381
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 101
allele frequency: 2.105965512208345e-3
allele num: 47959
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 4.299226139294927e-4
allele num: 9304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.604e0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

QD
type: SiteQuality
SIO_000300: 1.696e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.285e1

DP
type: SiteQuality
SIO_000300: 3.000752e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.144e-1

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.953219866626854e-5
allele num: 10047
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47934
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.487e1

DP
type: SiteQuality
SIO_000300: 2.96859e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29720
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086593635889411e-5
allele num: 47925
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075500107550011e-4
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

DP
type: SiteQuality
SIO_000300: 2.967327e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.854e0

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.914e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 1.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086593635889411e-5
allele num: 47925
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.76e-1

FS
type: SiteQuality
SIO_000300: 1.914e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.854e0

DP
type: SiteQuality
SIO_000300: 2.967327e6

QD
type: SiteQuality
SIO_000300: 1.573e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089340186369145e-5
allele num: 47862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.243e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.147e0

VQSLOD
type: SiteQuality
SIO_000300: -3.453e0

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e0

DP
type: SiteQuality
SIO_000300: 2.913711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8061
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.325743656534177e-5
allele num: 42997
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6921
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 5.353e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.086e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 1.225346e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8809
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.329e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.644e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.356149e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6471
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.203079884504331e-3
allele num: 8312
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.379999999999999e-2

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.931e1

DP
type: SiteQuality
SIO_000300: 1.452349e6

GenotypeQuality
all individuals: 44633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9113
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.154475923731552e-5
allele num: 46415
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8895
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.393203302620558e-4
allele num: 8357
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4345
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 2.857e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.31e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.828000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.488828e6

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45768
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8371
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.448284756254837e-5
allele num: 46524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9127
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 7.193e0

DP
type: SiteQuality
SIO_000300: 1.497346e6

VQSLOD
type: SiteQuality
SIO_000300: -9.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.59e-1

QD
type: SiteQuality
SIO_000300: 1.574e1

GenotypeQuality
all individuals: 318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9119
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.075199449497882e-4
allele num: 46503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9121
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.374e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.497655e6

FS
type: SiteQuality
SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.479e0

VQSLOD
type: SiteQuality
SIO_000300: -5.927e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.619999999999999e-2

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.093015630123511e-4
allele num: 9149
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46374
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.499047e6

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 1.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.082e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
all individuals: 772
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.868549172346641e-4
allele num: 8216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4163
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45415
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.12082492714638e-4
allele num: 8922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 4.489e0

DP
type: SiteQuality
SIO_000300: 1.454258e6

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
all individuals: 40313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4097
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.230052183221088e-5
allele num: 44842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 1.430292e6

FS
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

GenotypeQuality
all individuals: 540
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41793
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.206127125799059e-4
allele num: 8291
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5919
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8135
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.537e0

QD
type: SiteQuality
SIO_000300: 1.314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.121e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

DP
type: SiteQuality
SIO_000300: 1.288591e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.991e0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8209
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.420252674379205e-5
allele num: 41318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8009
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

QD
type: SiteQuality
SIO_000300: 1.056e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 2.395e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 1.270974e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: -7.53e-1

GenotypeQuality
all individuals: 1971
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 18874
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.453805335465581e-4
allele num: 41271
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.249687578105474e-4
allele num: 8002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8193
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.269925e6

FS
type: SiteQuality
SIO_000300: 1.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

QD
type: SiteQuality
SIO_000300: 1.621e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.06e-1

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3649
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5727
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.468587227529685e-5
allele num: 40509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 521
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

QD
type: SiteQuality
SIO_000300: 5.96e0

DP
type: SiteQuality
SIO_000300: 1.239834e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 1517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 1973
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.413264801818721e-5
allele num: 40468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5723
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.284521515735389e-4
allele num: 7785
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.247038284075321e-4
allele num: 8019
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.013e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.844e-1

QD
type: SiteQuality
SIO_000300: 1.834e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

DP
type: SiteQuality
SIO_000300: 1.238266e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1965
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7453
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.570404764308065e-5
allele num: 39628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5695e1

MQ
type: SiteQuality
SIO_000300: 5.629e1

MQRankSum
type: SiteQuality
SIO_000300: -2.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

DP
type: SiteQuality
SIO_000300: 1.200643e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.552e0

VQSLOD
type: SiteQuality
SIO_000300: -3.465e0

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3543
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7363
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7437
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.567460011810316e-5
allele num: 38949
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.26e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

DP
type: SiteQuality
SIO_000300: 1.184333e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.146e1

GenotypeQuality
all individuals: 1928
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.89897455374098e-4
allele num: 5266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3405
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37501
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 3.736e0

DP
type: SiteQuality
SIO_000300: 1.121401e6

VQSLOD
type: SiteQuality
SIO_000300: -1.659e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

QD
type: SiteQuality
SIO_000300: 1.129e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeQuality
all individuals: 17413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7049
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.970831690973591e-4
allele num: 5074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36385
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6827
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 467
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.213e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

QD
type: SiteQuality
SIO_000300: 1.834e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

FS
type: SiteQuality
SIO_000300: 1.418e0

DP
type: SiteQuality
SIO_000300: 1.074831e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.581e0

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31103
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 283
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6547
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 1.04073743681237e-3
allele num: 33630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.096491228070175e-3
allele num: 6384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 6.585446163977609e-4
allele num: 3037
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.24517280545189e-4
allele num: 6163
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.058e0

DP
type: SiteQuality
SIO_000300: 9.77083e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10714
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 405
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.26808800181447e-4
allele num: 4409
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5885
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6129
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32438
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 9.37584e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.026e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.251e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5409
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2711
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5993
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 377
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.48015873015873e-4
allele num: 4032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30102
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 8.57095e5

QD
type: SiteQuality
SIO_000300: 1.271e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

GenotypeQuality
all individuals: 2319
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 331
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5407
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2363
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.676953784738216e-5
allele num: 26052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4761
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 7.43574e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.503e1

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.982952961325527e-5
allele num: 25107
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4285
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 329
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.984e0

DP
type: SiteQuality
SIO_000300: 7.26676e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.915341888527102e-4
allele num: 5221
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2263
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24687
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4191
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

DP
type: SiteQuality
SIO_000300: 7.15248e5

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 2.666e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1922
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2383
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17634
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 7.35023888276369e-4
allele num: 2721
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.475e-1

DP
type: SiteQuality
SIO_000300: 5.99274e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2482
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 2.032520325203252e-3
allele num: 1476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1381
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15379
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 207
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2285
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.116e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 5.88501e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 7.935720662632675e-4
allele num: 10081
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East Asian
type: Population
allele count: 132
allele frequency: 1.99546485260771e-2
allele num: 6615
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087987806151212e-5
allele num: 47893
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

DP
type: SiteQuality
SIO_000300: 2.185508e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.824e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.838e1

GenotypeQuality
all individuals: 2965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088031403992316e-5
allele num: 47892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 2.177274e6

QD
type: SiteQuality
SIO_000300: 3.047e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 2.376472918110704e-3
allele num: 10099
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.045e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: -1.561e0

DP
type: SiteQuality
SIO_000300: 2.177789e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.517e1

FS
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 2.616e1

GenotypeQuality
all individuals: 3722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10099
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088031403992316e-5
allele num: 47892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.561e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.045e-1

MQ
type: SiteQuality
SIO_000300: 5.517e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 2.177789e6

QD
type: SiteQuality
SIO_000300: 2.616e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.980590215884333e-4
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 6.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.658e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 2.177888e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087987806151212e-5
allele num: 47893
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 8.78e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.44e1

DP
type: SiteQuality
SIO_000300: 2.177882e6

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.178856e6

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 2.202e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.15e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51148730350665e-4
allele num: 6616
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.15e-2

DP
type: SiteQuality
SIO_000300: 2.178856e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 2.202e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.087726257333138e-5
allele num: 47899
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.272e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

DP
type: SiteQuality
SIO_000300: 2.179043e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 8.438000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.07e-2

QD
type: SiteQuality
SIO_000300: 1.544e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.178550383028874e-4
allele num: 8485
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.262786522483403e-5
allele num: 47902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.199e-1

QD
type: SiteQuality
SIO_000300: 2.011e1

DP
type: SiteQuality
SIO_000300: 2.179703e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47903
num of homozygotes: 0

South Asian
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allele count: 29
allele frequency: 2.87242472266244e-3
allele num: 10096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.014e-1

FS
type: SiteQuality
SIO_000300: 1.144e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.180684e6

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.51148730350665e-4
allele num: 6616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.241e0

QD
type: SiteQuality
SIO_000300: 5.86e0

DP
type: SiteQuality
SIO_000300: 2.17924e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10095
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9299
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.174929548063877e-5
allele num: 47905
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.643e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.17934e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.193e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9267
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
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allele frequency: 3.227194492254733e-4
allele num: 9296
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African
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allele frequency: 0.0e0
allele num: 8485
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47898
num of homozygotes: 0

South Asian
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East Asian
type: Population
allele count: 0
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allele num: 6616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.178e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.091e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

DP
type: SiteQuality
SIO_000300: 2.179207e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 2947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088205813564985e-5
allele num: 47888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10091
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.114e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.178624e6

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.644e-1

GenotypeQuality
all individuals: 2707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 7.931000297412512e-4
allele num: 10087
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.044626441584489e-4
allele num: 47864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.134e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.464e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.701e1

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.178335e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 1.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

GenotypeQuality
all individuals: 2706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.9147332936744e-5
allele num: 10086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

DP
type: SiteQuality
SIO_000300: 2.177346e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.179e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29547
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089558476293959e-5
allele num: 47857
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.342e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 2.176928e6

GenotypeQuality
all individuals: 29519
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9254
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47838
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076889941847943e-4
allele num: 9286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10077
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 2.176501e6

QD
type: SiteQuality
SIO_000300: 2.089e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

FS
type: SiteQuality
SIO_000300: 4.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.189e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9254
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090388394163635e-5
allele num: 47838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10077
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.02e-1

QD
type: SiteQuality
SIO_000300: 2.089e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.189e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 2.176501e6

GenotypeQuality
all individuals: 2703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8465
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090912892568895e-5
allele num: 47826
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.842e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.076e0

FS
type: SiteQuality
SIO_000300: 1.763e0

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.032e-1

DP
type: SiteQuality
SIO_000300: 2.175951e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1