X-153217453-AGCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217453
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217450
    reference: chr 0
allele count: 3
allele frequency: 7.394079806768048e-5
allele num: 40573
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4889_4891delAGC
  hgvsp: ENSP00000346174.3:p.Gln1630del
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.822_824delAGC
  hgvsp: ENSP00000399589.1:p.Gln275del
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5231_5233delAGC
  hgvsp: ENSP00000359001.4:p.Gln1744del
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.5096_5098delAGC
  hgvsp: ENSP00000309555.7:p.Gln1699del
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7507
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln1699del
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: AGCT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

X-153217453-A-AGCTGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217453
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217459
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 40573
alternate allele: AGCTGCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5228_5233dupAGCAGC
  hgvsp: ENSP00000359001.4:p.Gln1743_Gln1744dup
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.5093_5098dupAGCAGC
  hgvsp: ENSP00000309555.7:p.Gln1698_Gln1699dup
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.819_824dupAGCAGC
  hgvsp: ENSP00000399589.1:p.Gln274_Gln275dup
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4886_4891dupAGCAGC
  hgvsp: ENSP00000346174.3:p.Gln1629_Gln1630dup
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: inframe insertion
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25997
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7507
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Gln1698_Gln1699dup
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-153217514-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217514
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217514
    reference: chr 0
allele count: 1
allele frequency: 4.098696614476597e-5
allele num: 24398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.5038A>G
  hgvsp: ENSP00000309555.7:p.Thr1680Ala
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4831A>G
  hgvsp: ENSP00000346174.3:p.Thr1611Ala
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5173A>G
  hgvsp: ENSP00000359001.4:p.Thr1725Ala
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.764A>G
  hgvsp: ENSP00000399589.1:p.Thr256Ala
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21561
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1680Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-153217515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217515
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217515
    reference: chr 0
allele count: 1
allele frequency: 4.163717366865137e-5
allele num: 24017
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.763C>T
  hgvsp: ENST00000444191.1:c.763C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.5037C>T
  hgvsp: ENST00000310441.7:c.5037C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5172C>T
  hgvsp: ENST00000369984.4:c.5172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4830C>T
  hgvsp: ENST00000354233.3:c.4830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22563
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1679Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-153217545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217545
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217545
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13159
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5142C>T
  hgvsp: ENST00000369984.4:c.5142C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4800C>T
  hgvsp: ENST00000354233.3:c.4800C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.5007C>T
  hgvsp: ENST00000310441.7:c.5007C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.733C>T
  hgvsp: ENST00000444191.1:c.733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His1669His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153217557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217557
    reference: chr 0
allele count: 1
allele frequency: 8.615490652192643e-5
allele num: 11607
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5130G>A
  hgvsp: ENST00000369984.4:c.5130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.721G>A
  hgvsp: ENST00000444191.1:c.721G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4995G>A
  hgvsp: ENST00000310441.7:c.4995G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4788G>A
  hgvsp: ENST00000354233.3:c.4788G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
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  variant carriers: 0
hgvs: p.Ala1665Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-153217558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217558
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217558
    reference: chr 0
allele count: 2
allele frequency: 1.743527155435446e-4
allele num: 11471
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4994C>T
  hgvsp: ENSP00000309555.7:p.Ala1665Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.720C>T
  hgvsp: ENSP00000399589.1:p.Ala241Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5129C>T
  hgvsp: ENSP00000359001.4:p.Ala1710Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4787C>T
  hgvsp: ENSP00000346174.3:p.Ala1596Val
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala1665Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

X-153217568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217568
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217568
    reference: chr 0
allele count: 1
allele frequency: 9.412650602409639e-5
allele num: 10624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.710G>A
  hgvsp: ENSP00000399589.1:p.Val238Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5119G>A
  hgvsp: ENSP00000359001.4:p.Val1707Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4984G>A
  hgvsp: ENSP00000309555.7:p.Val1662Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4777G>A
  hgvsp: ENSP00000346174.3:p.Val1593Met
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val1662Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-153217569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217569
    reference: chr 0
allele count: 3
allele frequency: 2.876042565429968e-4
allele num: 10431
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4776C>T
  hgvsp: ENST00000354233.3:c.4776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5118C>T
  hgvsp: ENST00000369984.4:c.5118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4983C>T
  hgvsp: ENST00000310441.7:c.4983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.709C>T
  hgvsp: ENST00000444191.1:c.709C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 487
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genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Thr1661Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

X-153217571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217571
    reference: chr 0
allele count: 1
allele frequency: 9.537434430138292e-5
allele num: 10485
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.707A>G
  hgvsp: ENSP00000399589.1:p.Thr237Ala
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5116A>G
  hgvsp: ENSP00000359001.4:p.Thr1706Ala
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4774A>G
  hgvsp: ENSP00000346174.3:p.Thr1592Ala
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4981A>G
  hgvsp: ENSP00000309555.7:p.Thr1661Ala
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1661Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153217595-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217595
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217595
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8579
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5092A>G
  hgvsp: ENSP00000359001.4:p.Met1698Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4750A>G
  hgvsp: ENSP00000346174.3:p.Met1584Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.683A>G
  hgvsp: ENSP00000399589.1:p.Met229Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4957A>G
  hgvsp: ENSP00000309555.7:p.Met1653Val
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1653Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-153217597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217597
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217597
    reference: chr 0
allele count: 1
allele frequency: 1.185817621249852e-4
allele num: 8433
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.681C>T
  hgvsp: ENSP00000399589.1:p.Pro228Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5090C>T
  hgvsp: ENSP00000359001.4:p.Pro1697Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4748C>T
  hgvsp: ENSP00000346174.3:p.Pro1583Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4955C>T
  hgvsp: ENSP00000309555.7:p.Pro1652Leu
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro1652Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-153217608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217608
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7323
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4944C>T
  hgvsp: ENST00000310441.7:c.4944C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.670C>T
  hgvsp: ENST00000444191.1:c.670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4737C>T
  hgvsp: ENST00000354233.3:c.4737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5079C>T
  hgvsp: ENST00000369984.4:c.5079C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
hgvs: c.4944C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

X-153217620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217620
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217620
    reference: chr 0
allele count: 8
allele frequency: 1.28122998078155e-3
allele num: 6244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.666-8C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4736-11C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4943-11C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5075-8C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
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hgvs: c.5075-8C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-153217623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217623
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217623
    reference: chr 0
allele count: 1
allele frequency: 1.677570877369569e-4
allele num: 5961
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.666-11C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5075-11C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4736-14C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4943-14C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-153217633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217633
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217633
    reference: chr 0
allele count: 2
allele frequency: 3.854307188282906e-4
allele num: 5189
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5075-21G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4736-24G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4943-24G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.666-21G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

X-153217640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217640
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217640
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4507
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4943-31G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4736-31G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5075-28G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.666-28G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ

X-153217648-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217648
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217647
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4001
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4943-40delG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4736-40delG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5075-37delG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.666-37delG
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: GC
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-153217916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217916
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217916
    reference: chr 0
allele count: 1
allele frequency: 1.591647036353218e-5
allele num: 62828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+49T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+49T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+49T>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+49T>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2202
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

X-153217917-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217917
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217917
    reference: chr 0
allele count: 2
allele frequency: 3.184814803019204e-5
allele num: 62798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+48A>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+48A>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+48A>G
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+48A>G
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7729
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9047
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7718
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 4814
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 4671
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genotype quality: GenotypeQuality
  all individuals: 1275
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genotype quality: GenotypeQuality
  all individuals: 4409
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genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-153217921-TCCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217918
    reference: chr 0
allele count: 1
allele frequency: 1.595023526597017e-5
allele num: 62695
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+41_4942+43delGGG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+41_665+43delGGG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+41_5074+43delGGG
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+41_4735+43delGGG
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1868
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genotype quality: GenotypeQuality
  all individuals: 619
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 522
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genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: TCCC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

X-153217922-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217922
    reference: chr 0
allele count: 1
allele frequency: 1.595252528475258e-5
allele num: 62686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+43G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+43G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+43G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+43G>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2683
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genotype quality: GenotypeQuality
  all individuals: 619
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-153217922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217922
    reference: chr 0
allele count: 4
allele frequency: 6.381010113901031e-5
allele num: 62686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+43G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+43G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+43G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+43G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7951
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6681
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

X-153217923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217923
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217923
    reference: chr 0
allele count: 2
allele frequency: 3.189792663476874e-5
allele num: 62700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+42G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+42G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+42G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+42G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-153217930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217930
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217930
    reference: chr 0
allele count: 3
allele frequency: 4.756619628983669e-5
allele num: 63070
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+35G>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+35G>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1943
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153217931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217931
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217931
    reference: chr 0
allele count: 19
allele frequency: 3.006947631633089e-4
allele num: 63187
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+34C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+34C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+34C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+34C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 162
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-153217931-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217931
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217931
    reference: chr 0
allele count: 1
allele frequency: 1.582604016648994e-5
allele num: 63187
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+34C>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+34C>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+34C>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+34C>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-153217933-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217933
    reference: chr 0
allele count: 4
allele frequency: 6.311338319290605e-5
allele num: 63378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+32G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+32G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+32G>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+32G>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 59
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-153217935-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217935
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217935
    reference: chr 0
allele count: 7
allele frequency: 1.103265666372463e-4
allele num: 63448
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+30G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+30G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+30G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+30G>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9991
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 539
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

X-153217936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217936
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217936
    reference: chr 0
allele count: 1
allele frequency: 1.570919144791618e-5
allele num: 63657
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+29C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+29C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+29C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+29C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2808
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genotype quality: GenotypeQuality
  all individuals: 56
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

X-153217943-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217943
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217943
    reference: chr 0
allele count: 1
allele frequency: 1.552578055861758e-5
allele num: 64409
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+22G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+22G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+22G>C
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+22G>C
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153217956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217956
    reference: chr 0
allele count: 1
allele frequency: 1.518556763651825e-5
allele num: 65852
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+9C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+9C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+9C>T
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+9C>T
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-153217959-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217959
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217959
    reference: chr 0
allele count: 2
allele frequency: 3.011503945070168e-5
allele num: 66412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5074+6T>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4942+6T>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.665+6T>A
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4735+6T>A
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31468
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 5542
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 94
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
hgvs: c.4942+6T>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

X-153217972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217972
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217972
    reference: chr 0
allele count: 21
allele frequency: 3.119475928044088e-4
allele num: 67319
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4728C>T
  hgvsp: ENST00000354233.3:c.4728C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4935C>T
  hgvsp: ENST00000310441.7:c.4935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5067C>T
  hgvsp: ENST00000369984.4:c.5067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.658C>T
  hgvsp: ENST00000444191.1:c.658C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11675
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5163
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 23707
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
  all individuals: 2117
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 500
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 594
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
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genotype quality: GenotypeQuality
  all individuals: 1796
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 355
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genotype quality: GenotypeQuality
  all individuals: 958
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5358
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1645Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

X-153217982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217982
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217982
    reference: chr 0
allele count: 1
allele frequency: 1.470869430920617e-5
allele num: 67987
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.648C>T
  hgvsp: ENSP00000399589.1:p.Ala217Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4718C>T
  hgvsp: ENSP00000346174.3:p.Ala1573Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4925C>T
  hgvsp: ENSP00000309555.7:p.Ala1642Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5057C>T
  hgvsp: ENSP00000359001.4:p.Ala1686Val
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 23137
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genotype depth: GenotypeDepth
  all individuals: 245
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 729
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genotype quality: GenotypeQuality
  all individuals: 373
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genotype quality: GenotypeQuality
  all individuals: 1977
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1642Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

X-153217983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217983
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217983
    reference: chr 0
allele count: 1
allele frequency: 1.468666010662515e-5
allele num: 68089
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4717G>A
  hgvsp: ENSP00000346174.3:p.Ala1573Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.647G>A
  hgvsp: ENSP00000399589.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5056G>A
  hgvsp: ENSP00000359001.4:p.Ala1686Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4924G>A
  hgvsp: ENSP00000309555.7:p.Ala1642Thr
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1642Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-153217984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217984
    reference: chr 0
allele count: 1
allele frequency: 1.463893077249638e-5
allele num: 68311
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4923C>T
  hgvsp: ENST00000310441.7:c.4923C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4716C>T
  hgvsp: ENST00000354233.3:c.4716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.646C>T
  hgvsp: ENST00000444191.1:c.646C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5055C>T
  hgvsp: ENST00000369984.4:c.5055C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 9574
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1641Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-153217996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153217996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153217996
    reference: chr 0
allele count: 6
allele frequency: 8.673653776653415e-5
allele num: 69175
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4704G>A
  hgvsp: ENST00000354233.3:c.4704G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5043G>A
  hgvsp: ENST00000369984.4:c.5043G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4911G>A
  hgvsp: ENST00000310441.7:c.4911G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.634G>A
  hgvsp: ENST00000444191.1:c.634G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30867
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  variant carriers: 0
hgvs: p.Ala1637Ala
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

X-153218011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218011
    reference: chr 0
allele count: 10
allele frequency: 1.421706616622594e-4
allele num: 70338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4689C>T
  hgvsp: ENST00000354233.3:c.4689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4896C>T
  hgvsp: ENST00000310441.7:c.4896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.619C>T
  hgvsp: ENST00000444191.1:c.619C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5028C>T
  hgvsp: ENST00000369984.4:c.5028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala1632Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-153218026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218026
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 71310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4881G>A
  hgvsp: ENST00000310441.7:c.4881G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4674G>A
  hgvsp: ENST00000354233.3:c.4674G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.5013G>A
  hgvsp: ENST00000369984.4:c.5013G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.604G>A
  hgvsp: ENST00000444191.1:c.604G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
hgvs: p.Thr1627Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-153218062-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218062
    reference: chr 0
allele count: 1
allele frequency: 1.297740633556977e-5
allele num: 77057
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4845G>T
  hgvsp: ENST00000310441.7:c.4845G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4638G>T
  hgvsp: ENST00000354233.3:c.4638G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.568G>T
  hgvsp: ENST00000444191.1:c.568G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4977G>T
  hgvsp: ENST00000369984.4:c.4977G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr1615Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

X-153218117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218117
    reference: chr 0
allele count: 1
allele frequency: 1.204920896943116e-5
allele num: 82993
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.513C>T
  hgvsp: ENSP00000399589.1:p.Ala172Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4922C>T
  hgvsp: ENSP00000359001.4:p.Ala1641Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4790C>T
  hgvsp: ENSP00000309555.7:p.Ala1597Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4583C>T
  hgvsp: ENSP00000346174.3:p.Ala1528Val
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18221
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 693
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genotype quality: GenotypeQuality
  all individuals: 47682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1597Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-153218117-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218117
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218117
    reference: chr 0
allele count: 1
allele frequency: 1.204920896943116e-5
allele num: 82993
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.513C>G
  hgvsp: ENSP00000399589.1:p.Ala172Gly
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4790C>G
  hgvsp: ENSP00000309555.7:p.Ala1597Gly
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4922C>G
  hgvsp: ENSP00000359001.4:p.Ala1641Gly
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4583C>G
  hgvsp: ENSP00000346174.3:p.Ala1528Gly
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 420
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 84
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 500
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 107
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
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genotype quality: GenotypeQuality
  all individuals: 962
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1597Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-153218128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218128
    reference: chr 0
allele count: 3
allele frequency: 3.615067601764153e-5
allele num: 82986
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4779C>T
  hgvsp: ENST00000310441.7:c.4779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4911C>T
  hgvsp: ENST00000369984.4:c.4911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.502C>T
  hgvsp: ENST00000444191.1:c.502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4572C>T
  hgvsp: ENST00000354233.3:c.4572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32903
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genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 46905
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genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 175
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genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1593Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-153218134-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218134
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218134
    reference: chr 0
allele count: 15
allele frequency: 1.808318264014467e-4
allele num: 82950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.496A>G
  hgvsp: ENST00000444191.1:c.496A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4773A>G
  hgvsp: ENST00000310441.7:c.4773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4566A>G
  hgvsp: ENST00000354233.3:c.4566A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4905A>G
  hgvsp: ENST00000369984.4:c.4905A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 46659
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu1591Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

X-153218154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218154
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218154
    reference: chr 0
allele count: 2
allele frequency: 2.43036990229913e-5
allele num: 82292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4885T>C
  hgvsp: ENST00000369984.4:c.4885T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4546T>C
  hgvsp: ENST00000354233.3:c.4546T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.476T>C
  hgvsp: ENST00000444191.1:c.476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4753T>C
  hgvsp: ENST00000310441.7:c.4753T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
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genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 647
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30878
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 511
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genotype quality: GenotypeQuality
  all individuals: 208
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 311
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 887
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genotype quality: GenotypeQuality
  all individuals: 170
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genotype quality: GenotypeQuality
  all individuals: 44866
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  variant carriers: 1
hgvs: p.Leu1585Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-153218166-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218166
    reference: chr 0
allele count: 2
allele frequency: 2.460327223520728e-5
allele num: 81290
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4741G>C
  hgvsp: ENSP00000309555.7:p.Glu1581Gln
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.464G>C
  hgvsp: ENSP00000399589.1:p.Glu156Gln
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4534G>C
  hgvsp: ENSP00000346174.3:p.Glu1512Gln
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4873G>C
  hgvsp: ENSP00000359001.4:p.Glu1625Gln
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17809
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
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genotype depth: GenotypeDepth
  all individuals: 29086
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genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 710
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 275
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 327
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genotype quality: GenotypeQuality
  all individuals: 42516
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genotype quality: GenotypeQuality
  all individuals: 1019
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genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu1581Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

X-153218166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218166
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218166
    reference: chr 0
allele count: 1
allele frequency: 1.230163611760364e-5
allele num: 81290
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4741G>A
  hgvsp: ENSP00000309555.7:p.Glu1581Lys
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.464G>A
  hgvsp: ENSP00000399589.1:p.Glu156Lys
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4534G>A
  hgvsp: ENSP00000346174.3:p.Glu1512Lys
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4873G>A
  hgvsp: ENSP00000359001.4:p.Glu1625Lys
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29086
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 240
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 90
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genotype quality: GenotypeQuality
  all individuals: 193
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu1581Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

X-153218167-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218167
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218167
    reference: chr 0
allele count: 9
allele frequency: 1.110220193671745e-4
allele num: 81065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.463C>T
  hgvsp: ENST00000444191.1:c.463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4740C>T
  hgvsp: ENST00000310441.7:c.4740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4872C>T
  hgvsp: ENST00000369984.4:c.4872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4533C>T
  hgvsp: ENST00000354233.3:c.4533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17599
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1580Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

X-153218176-GGGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218176
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218173
    reference: chr 0
allele count: 8
allele frequency: 9.99675105590683e-5
allele num: 80026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4860_4862delACC
  hgvsp: ENSP00000359001.4:p.Pro1621del
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4521_4523delACC
  hgvsp: ENSP00000346174.3:p.Pro1508del
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.451_453delACC
  hgvsp: ENSP00000399589.1:p.Pro152del
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4728_4730delACC
  hgvsp: ENSP00000309555.7:p.Pro1577del
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27081
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Pro1577del
num of homozygotes: 1
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: GGGT
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

X-153218182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218182
    reference: chr 0
allele count: 244
allele frequency: 3.075410579916561e-3
allele num: 79339
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4857C>T
  hgvsp: ENST00000369984.4:c.4857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4518C>T
  hgvsp: ENST00000354233.3:c.4518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4725C>T
  hgvsp: ENST00000310441.7:c.4725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.448C>T
  hgvsp: ENST00000444191.1:c.448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16389
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 26220
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8975
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 3
hgvs: p.Pro1575Pro
num of homozygotes: 2
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-153218187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218187
    reference: chr 0
allele count: 1
allele frequency: 1.273998955320857e-5
allele num: 78493
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4720C>T
  hgvsp: ENSP00000309555.7:p.Pro1574Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4852C>T
  hgvsp: ENSP00000359001.4:p.Pro1618Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4513C>T
  hgvsp: ENSP00000346174.3:p.Pro1505Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.443C>T
  hgvsp: ENSP00000399589.1:p.Pro149Ser
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro1574Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

X-153218189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218189
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218189
    reference: chr 0
allele count: 1
allele frequency: 1.278952282290348e-5
allele num: 78189
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4511A>G
  hgvsp: ENSP00000346174.3:p.Gln1504Arg
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4850A>G
  hgvsp: ENSP00000359001.4:p.Gln1617Arg
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.441A>G
  hgvsp: ENSP00000399589.1:p.Gln148Arg
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4718A>G
  hgvsp: ENSP00000309555.7:p.Gln1573Arg
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 144
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genotype quality: GenotypeQuality
  all individuals: 10219
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 809
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln1573Arg
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-153218208-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218208
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218208
    reference: chr 0
allele count: 1
allele frequency: 1.34386926839757e-5
allele num: 74412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4699G>C
  hgvsp: ENSP00000309555.7:p.Val1567Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4831G>C
  hgvsp: ENSP00000359001.4:p.Val1611Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.422G>C
  hgvsp: ENSP00000399589.1:p.Val142Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4492G>C
  hgvsp: ENSP00000346174.3:p.Val1498Leu
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
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genotype depth: GenotypeDepth
  all individuals: 9620
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 201
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 524
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genotype quality: GenotypeQuality
  all individuals: 73
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genotype quality: GenotypeQuality
  all individuals: 42
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genotype quality: GenotypeQuality
  all individuals: 1181
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1077
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genotype quality: GenotypeQuality
  all individuals: 31199
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genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val1567Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-153218211-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218211
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218211
    reference: chr 0
allele count: 1
allele frequency: 1.364666066213598e-5
allele num: 73278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4828G>T
  hgvsp: ENSP00000359001.4:p.Val1610Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.419G>T
  hgvsp: ENSP00000399589.1:p.Val141Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4696G>T
  hgvsp: ENSP00000309555.7:p.Val1566Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4489G>T
  hgvsp: ENSP00000346174.3:p.Val1497Leu
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2981
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13572
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 607
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genotype quality: GenotypeQuality
  all individuals: 179
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genotype quality: GenotypeQuality
  all individuals: 447
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3236
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1566Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-153218211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218211
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218211
    reference: chr 0
allele count: 15
allele frequency: 2.046999099320396e-4
allele num: 73278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4696G>A
  hgvsp: ENSP00000309555.7:p.Val1566Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4828G>A
  hgvsp: ENSP00000359001.4:p.Val1610Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.419G>A
  hgvsp: ENSP00000399589.1:p.Val141Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4489G>A
  hgvsp: ENSP00000346174.3:p.Val1497Met
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 200
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1198
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1566Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-153218220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218220
    reference: chr 0
allele count: 3
allele frequency: 4.220596510973551e-5
allele num: 71080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4480G>A
  hgvsp: ENSP00000346174.3:p.Gly1494Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.410G>A
  hgvsp: ENSP00000399589.1:p.Gly138Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4687G>A
  hgvsp: ENSP00000309555.7:p.Gly1563Ser
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4819G>A
  hgvsp: ENSP00000359001.4:p.Gly1607Ser
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
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genotype depth: GenotypeDepth
  all individuals: 17383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11877
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly1563Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-153218221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218221
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218221
    reference: chr 0
allele count: 16
allele frequency: 2.258515308499075e-4
allele num: 70843
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.409C>T
  hgvsp: ENST00000444191.1:c.409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4686C>T
  hgvsp: ENST00000310441.7:c.4686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4479C>T
  hgvsp: ENST00000354233.3:c.4479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4818C>T
  hgvsp: ENST00000369984.4:c.4818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 447
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  variant carriers: 1
hgvs: p.Ala1562Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-153218236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218236
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218236
    reference: chr 0
allele count: 1
allele frequency: 1.527930570834861e-5
allele num: 65448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.394G>A
  hgvsp: ENST00000444191.1:c.394G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4464G>A
  hgvsp: ENST00000354233.3:c.4464G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4803G>A
  hgvsp: ENST00000369984.4:c.4803G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4671G>A
  hgvsp: ENST00000310441.7:c.4671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser1557Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-153218237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218237
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218237
    reference: chr 0
allele count: 2
allele frequency: 3.072810238603715e-5
allele num: 65087
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4802C>T
  hgvsp: ENSP00000359001.4:p.Ser1601Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4670C>T
  hgvsp: ENSP00000309555.7:p.Ser1557Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4463C>T
  hgvsp: ENSP00000346174.3:p.Ser1488Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.393C>T
  hgvsp: ENSP00000399589.1:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ser1557Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-153218240-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218240
    reference: chr 0
allele count: 1
allele frequency: 1.549210677159987e-5
allele num: 64549
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4799C>G
  hgvsp: ENSP00000359001.4:p.Ser1600Cys
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4667C>G
  hgvsp: ENSP00000309555.7:p.Ser1556Cys
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.390C>G
  hgvsp: ENSP00000399589.1:p.Ser131Cys
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4460C>G
  hgvsp: ENSP00000346174.3:p.Ser1487Cys
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1556Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-153218248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218248
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218248
    reference: chr 0
allele count: 1
allele frequency: 1.640742928397979e-5
allele num: 60948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.382G>A
  hgvsp: ENST00000444191.1:c.382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4791G>A
  hgvsp: ENST00000369984.4:c.4791G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4452G>A
  hgvsp: ENST00000354233.3:c.4452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4659G>A
  hgvsp: ENST00000310441.7:c.4659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3553
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hgvs: p.Gly1553Gly
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-153218268-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218268
    reference: chr 0
allele count: 1
allele frequency: 2.199348992698161e-5
allele num: 45468
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4639G>T
  hgvsp: ENSP00000309555.7:p.Val1547Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.362G>T
  hgvsp: ENSP00000399589.1:p.Val122Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4771G>T
  hgvsp: ENSP00000359001.4:p.Val1591Leu
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4432G>T
  hgvsp: ENSP00000346174.3:p.Val1478Leu
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val1547Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-153218268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218268
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45468
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4639G>A
  hgvsp: ENSP00000309555.7:p.Val1547Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4432G>A
  hgvsp: ENSP00000346174.3:p.Val1478Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4771G>A
  hgvsp: ENSP00000359001.4:p.Val1591Met
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.362G>A
  hgvsp: ENSP00000399589.1:p.Val122Met
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 22083
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val1547Met
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

X-153218269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218269
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218269
    reference: chr 0
allele count: 1
allele frequency: 2.235686020255315e-5
allele num: 44729
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.361C>T
  hgvsp: ENST00000444191.1:c.361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4431C>T
  hgvsp: ENST00000354233.3:c.4431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4638C>T
  hgvsp: ENST00000310441.7:c.4638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4770C>T
  hgvsp: ENST00000369984.4:c.4770C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 16546
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1546Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-153218271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218271
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218271
    reference: chr 0
allele count: 16
allele frequency: 3.758515386422363e-4
allele num: 42570
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4636G>A
  hgvsp: ENSP00000309555.7:p.Ala1546Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4768G>A
  hgvsp: ENSP00000359001.4:p.Ala1590Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.359G>A
  hgvsp: ENSP00000399589.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4429G>A
  hgvsp: ENSP00000346174.3:p.Ala1477Thr
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22939
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1299
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29142
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10522
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala1546Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-153218272-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218272
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 42488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4767C>G
  hgvsp: ENST00000369984.4:c.4767C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4428C>G
  hgvsp: ENST00000354233.3:c.4428C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.358C>G
  hgvsp: ENST00000444191.1:c.358C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4635C>G
  hgvsp: ENST00000310441.7:c.4635C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23120
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15736
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
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genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29878
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 379
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1545Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-153218275-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218275
    reference: chr 0
allele count: 1
allele frequency: 2.474757473767571e-5
allele num: 40408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4632G>C
  hgvsp: ENST00000310441.7:c.4632G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4764G>C
  hgvsp: ENST00000369984.4:c.4764G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4425G>C
  hgvsp: ENST00000354233.3:c.4425G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.355G>C
  hgvsp: ENST00000444191.1:c.355G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15227
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 359
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 18
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2804
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 131
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro1544Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-153218275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218275
    reference: chr 0
allele count: 2
allele frequency: 4.949514947535141e-5
allele num: 40408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4764G>A
  hgvsp: ENST00000369984.4:c.4764G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.355G>A
  hgvsp: ENST00000444191.1:c.355G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4632G>A
  hgvsp: ENST00000310441.7:c.4632G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4425G>A
  hgvsp: ENST00000354233.3:c.4425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 339
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genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1544Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-153218278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218278
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218278
    reference: chr 0
allele count: 1
allele frequency: 2.623638987275351e-5
allele num: 38115
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4761C>T
  hgvsp: ENST00000369984.4:c.4761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4422C>T
  hgvsp: ENST00000354233.3:c.4422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4629C>T
  hgvsp: ENST00000310441.7:c.4629C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.352C>T
  hgvsp: ENST00000444191.1:c.352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2688
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hgvs: p.Leu1543Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-153218281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218281
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218281
    reference: chr 0
allele count: 6
allele frequency: 1.632741917927506e-4
allele num: 36748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.349G>A
  hgvsp: ENST00000444191.1:c.349G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4626G>A
  hgvsp: ENST00000310441.7:c.4626G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4419G>A
  hgvsp: ENST00000354233.3:c.4419G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4758G>A
  hgvsp: ENST00000369984.4:c.4758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13021
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2422
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Glu1542Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

X-153218288-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218288
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218288
    reference: chr 0
allele count: 1
allele frequency: 2.908329455560726e-5
allele num: 34384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4751C>T
  hgvsp: ENSP00000359001.4:p.Thr1584Ile
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4619C>T
  hgvsp: ENSP00000309555.7:p.Thr1540Ile
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4412C>T
  hgvsp: ENSP00000346174.3:p.Thr1471Ile
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.342C>T
  hgvsp: ENSP00000399589.1:p.Thr115Ile
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12840
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr1540Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-153218312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218312
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218312
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 24177
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4595C>T
  hgvsp: ENSP00000309555.7:p.Ala1532Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.318C>T
  hgvsp: ENSP00000399589.1:p.Ala107Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4388C>T
  hgvsp: ENSP00000346174.3:p.Ala1463Val
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4727C>T
  hgvsp: ENSP00000359001.4:p.Ala1576Val
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22742
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1532Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-153218313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218313
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 23566
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4594G>A
  hgvsp: ENSP00000309555.7:p.Ala1532Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.317G>A
  hgvsp: ENSP00000399589.1:p.Ala107Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4726G>A
  hgvsp: ENSP00000359001.4:p.Ala1576Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4387G>A
  hgvsp: ENSP00000346174.3:p.Ala1463Thr
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22664
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20543
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1532Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

X-153218314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218314
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218314
    reference: chr 0
allele count: 1
allele frequency: 4.225114078080108e-5
allele num: 23668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4725C>T
  hgvsp: ENST00000369984.4:c.4725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.316C>T
  hgvsp: ENST00000444191.1:c.316C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4386C>T
  hgvsp: ENST00000354233.3:c.4386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4593C>T
  hgvsp: ENST00000310441.7:c.4593C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1531Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

X-153218316-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24153218316
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24153218316
    reference: chr 0
allele count: 1
allele frequency: 4.259669449650707e-5
allele num: 23476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000359001
  ensembl transcript: ENST00000369984
  gene symbol: HCFC1
  hgvsc: ENST00000369984.4:c.4723T>A
  hgvsp: ENSP00000359001.4:p.Ser1575Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000399589
  ensembl transcript: ENST00000444191
  gene symbol: HCFC1
  hgvsc: ENST00000444191.1:c.314T>A
  hgvsp: ENSP00000399589.1:p.Ser106Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000309555
  ensembl transcript: ENST00000310441
  gene symbol: HCFC1
  hgvsc: ENST00000310441.7:c.4591T>A
  hgvsp: ENSP00000309555.7:p.Ser1531Thr
  variant of: http://identifiers.org/hgnc/4839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172534
  ensembl protein: ENSP00000346174
  ensembl transcript: ENST00000354233
  gene symbol: HCFC1
  hgvsc: ENST00000354233.3:c.4384T>A
  hgvsp: ENSP00000346174.3:p.Ser1462Thr
  variant of: http://identifiers.org/hgnc/4839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1531Thr
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4403
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.605523710265763e-4
allele num: 3838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1331
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.281542322610084e-4
allele num: 4383
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.098360655737705e-3
allele num: 244
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.34e-2

QD
type: SiteQuality
SIO_000300: 2.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 6.76356e5

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4403
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4383
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1331
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22782
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

FS
type: SiteQuality
SIO_000300: 7.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 6.76356e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.34e-2

QD
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
all individuals: 1046
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.432181345224824e-5
allele num: 13455
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1897
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3301
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2913
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 145
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.44e-2

QD
type: SiteQuality
SIO_000300: 2.573e1

DP
type: SiteQuality
SIO_000300: 4.64162e5

VQSLOD
type: SiteQuality
SIO_000300: -1.482e-1

GenotypeQuality
all individuals: 394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.068425897514575e-4
allele num: 3259
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1843
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2025
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 145
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13252
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.355e0

QD
type: SiteQuality
SIO_000300: 1.405e1

DP
type: SiteQuality
SIO_000300: 4.60276e5

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16453
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1520
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 577
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7337
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1211
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 81
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 253
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.85e-2

DP
type: SiteQuality
SIO_000300: 3.56287e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.101e1

QD
type: SiteQuality
SIO_000300: 1.126e1

VQSLOD
type: SiteQuality
SIO_000300: -6.610000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6475
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1111
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1377
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 187
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.344735435595938e-4
allele num: 1871
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.01e-2

QD
type: SiteQuality
SIO_000300: 1.608e1

VQSLOD
type: SiteQuality
SIO_000300: -8.163e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 3.41965e5

FS
type: SiteQuality
SIO_000300: 3.192e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 59
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555451858764971e-4
allele num: 6429
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 181
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.547169811320754e-4
allele num: 1325
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.848e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

QD
type: SiteQuality
SIO_000300: 1.902e1

VQSLOD
type: SiteQuality
SIO_000300: -2.037e0

DP
type: SiteQuality
SIO_000300: 3.41306e5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 5.586592178770949e-4
allele num: 1790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6003
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 165
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1081
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 449
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.05e-2

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.32758e5

FS
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1661
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.075283369988157e-4
allele num: 5911
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1775
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 159
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1057
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.14e-2

FS
type: SiteQuality
SIO_000300: 1.113e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

DP
type: SiteQuality
SIO_000300: 3.3032e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 85
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
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variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1779
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.68662506324844e-4
allele num: 5929
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 159
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1081
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1043
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.114e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

DP
type: SiteQuality
SIO_000300: 3.2966e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.95e-1

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14801
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4901
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 683
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 961
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

QD
type: SiteQuality
SIO_000300: 1.545e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.569999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.98301e5

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 127
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 341
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.743088334457181e-4
allele num: 1483
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 651
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.467e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.65e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 2.9537e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4225
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 835
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 299
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1331
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.71655e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 1.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 6.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 81
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 367
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 257
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 2.213613724405091e-3
allele num: 3614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.489999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 3.926e0

DP
type: SiteQuality
SIO_000300: 2.44582e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3459
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African
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European (Finnish)
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allele frequency: 0.0e0
allele num: 77
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.461988304093567e-3
allele num: 684
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Latino
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allele frequency: 0.0e0
allele num: 240
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 2.38287e5

FS
type: SiteQuality
SIO_000300: 4.661e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.89e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3010
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.984126984126984e-3
allele num: 1008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 2.15903e5

VQSLOD
type: SiteQuality
SIO_000300: -2.187e0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 457
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.98695e5

QD
type: SiteQuality
SIO_000300: 2.043e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.87e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 65
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 173
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.87487e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.279999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 2735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.779676098949991e-4
allele num: 5619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2857
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 385
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 2.947e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.85807e5

GenotypeQuality
all individuals: 99
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 381
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2845
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35551
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.784439685938615e-4
allele num: 5604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.325040688212044e-4
allele num: 4301
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.177e1

FS
type: SiteQuality
SIO_000300: 3.405e0

DP
type: SiteQuality
SIO_000300: 8.86471e5

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.81610813855252e-5
allele num: 35510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.615e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.619e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

QD
type: SiteQuality
SIO_000300: 1.446e1

MQRankSum
type: SiteQuality
SIO_000300: -1.286e0

DP
type: SiteQuality
SIO_000300: 8.9236e5

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.817060116062877e-5
allele num: 35498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

FS
type: SiteQuality
SIO_000300: 8.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

DP
type: SiteQuality
SIO_000300: 8.95563e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

GenotypeQuality
all individuals: 3127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.126824046425151e-4
allele num: 35498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 8.95563e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

FS
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5583
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.634596422031272e-5
allele num: 35495
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5605
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.409e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.747e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

DP
type: SiteQuality
SIO_000300: 8.97494e5

GenotypeQuality
all individuals: 600
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.779042874933286e-4
allele num: 5621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5633
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.301495972382048e-4
allele num: 4345
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.801512816921137e-5
allele num: 35695
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 389
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.26188e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

FS
type: SiteQuality
SIO_000300: 2.469e0

QD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.674e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

GenotypeQuality
all individuals: 497
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 18
allele frequency: 3.196022727272727e-3
allele num: 5632
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.298850574712644e-4
allele num: 4350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2887
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5635
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 2.874e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

QD
type: SiteQuality
SIO_000300: 1.356e1

DP
type: SiteQuality
SIO_000300: 9.35129e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 663
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.298850574712644e-4
allele num: 4350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2887
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5635
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 2.874e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 9.35129e5

QD
type: SiteQuality
SIO_000300: 1.356e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5651
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 391
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2897
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.76772140710624e-4
allele num: 5657
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.871278057718735e-4
allele num: 4366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

QD
type: SiteQuality
SIO_000300: 1.641e1

FS
type: SiteQuality
SIO_000300: 1.0023e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.065e-1

DP
type: SiteQuality
SIO_000300: 9.44135e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 2777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
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GenotypeQuality
all individuals: 23783
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5659
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.785204991087344e-5
allele num: 35904
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.847269325225119e-4
allele num: 8551
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2902
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.525252525252525e-3
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 9.57568e5

FS
type: SiteQuality
SIO_000300: 1.2914e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

QD
type: SiteQuality
SIO_000300: 1.002e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.716e0

GenotypeQuality
all individuals: 2984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4391
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.774155963048243e-5
allele num: 36047
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.783e1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 9.65766e5

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9650
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 403
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.237637055269635e-4
allele num: 4469
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5721
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.007039e6

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 30879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
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variant carriers: 1

GenotypeQuality
all individuals: 761
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.677376171352075e-5
allele num: 37350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3109
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 415
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.054186e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.966e0

QD
type: SiteQuality
SIO_000300: 5.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQ
type: SiteQuality
SIO_000300: 5.875e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 1884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.412386964681795e-4
allele num: 5861
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4673
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8705
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5903
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 7.49e0

DP
type: SiteQuality
SIO_000300: 1.066189e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 31018
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 3625
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 3.550896178559351e-3
allele num: 5914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8739
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5997
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38213
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.167e0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.087245e6

GenotypeQuality
all individuals: 588
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.59087493846672e-5
allele num: 38597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 425
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4863
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6081
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.672e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.097844e6

MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
all individuals: 837
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4875
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.586251487094605e-5
allele num: 38666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8757
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6093
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

QD
type: SiteQuality
SIO_000300: 1.116e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.987e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

DP
type: SiteQuality
SIO_000300: 1.100164e6

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 425
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.579313902501935e-5
allele num: 38770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.972e0

QD
type: SiteQuality
SIO_000300: 1.101e1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

DP
type: SiteQuality
SIO_000300: 1.105086e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1972
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6243
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5031
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8783
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.528818223513224e-4
allele num: 39246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3416
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.662e1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.115309e6

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 3.368e0

GenotypeQuality
all individuals: 3444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 922
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.563721657544957e-3
allele num: 6395
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3465
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5307
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8807
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.116501e6

MQ
type: SiteQuality
SIO_000300: 5.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.295e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 3.795e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5707
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6105
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.61e1

VQSLOD
type: SiteQuality
SIO_000300: -3.954e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 5.705e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.123086e6

GenotypeQuality
all individuals: 1284
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.457725947521866e-4
allele num: 6860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7821
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42769
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6311
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9009
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.045e1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 1.242923e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

FS
type: SiteQuality
SIO_000300: 1.394e0

VQSLOD
type: SiteQuality
SIO_000300: -6.77e-1

GenotypeQuality
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.18402603359032e-5
allele num: 45787
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9111
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 3.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.384508e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

GenotypeQuality
all individuals: 47682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6527
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.18402603359032e-5
allele num: 45787
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9111
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 3.155e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

DP
type: SiteQuality
SIO_000300: 1.384508e6

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

GenotypeQuality
all individuals: 535
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7557
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.183787561146052e-5
allele num: 45792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.360717658168083e-4
allele num: 4236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6527
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.099868015838099e-4
allele num: 9092
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.968e1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.735e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

DP
type: SiteQuality
SIO_000300: 1.382028e6

GenotypeQuality
all individuals: 102
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9085
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 8.687153871212944e-4
allele num: 9209
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6521
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.529051987767584e-4
allele num: 45780
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.378938e6

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 5.16e-1

QD
type: SiteQuality
SIO_000300: 1.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.237637055269635e-4
allele num: 8938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4181
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45455
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.725e-1

QD
type: SiteQuality
SIO_000300: 3.237e1

DP
type: SiteQuality
SIO_000300: 1.357939e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.452557994567879e-5
allele num: 44918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4075
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6451
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7397
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.687e0

QD
type: SiteQuality
SIO_000300: 2.258e1

DP
type: SiteQuality
SIO_000300: 1.330528e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7397
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.22627899728394e-5
allele num: 44918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4075
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6451
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.258e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.687e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

DP
type: SiteQuality
SIO_000300: 1.330528e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 592
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44773
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4049
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.02424035506999e-3
allele num: 8787
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 5.198e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

QD
type: SiteQuality
SIO_000300: 2.473e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.89e0

DP
type: SiteQuality
SIO_000300: 1.322024e6

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7285
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.195402298850574e-4
allele num: 8700
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44151
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3967
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.639e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.290244e6

VQSLOD
type: SiteQuality
SIO_000300: -6.746e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.441e0

QD
type: SiteQuality
SIO_000300: 3.41e1

MQRankSum
type: SiteQuality
SIO_000300: -1.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

GenotypeQuality
all individuals: 161
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 758
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 234
bin: 9.75e1
variant carriers: 162

GenotypeQuality
all individuals: 38416
bin: 6.25e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 13
allele frequency: 3.335899409802412e-3
allele num: 3897
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.798446016467587e-4
allele num: 8623
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.7243947858473e-3
allele num: 537
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6339
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.381024720342494e-4
allele num: 7241
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.11731843575419e-3
allele num: 8950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 213
allele frequency: 4.868348875479978e-3
allele num: 43752
num of homozygotes: 2

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

DP
type: SiteQuality
SIO_000300: 1.277056e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.574e-1

QD
type: SiteQuality
SIO_000300: 1.911e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1526
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37026
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.254599e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 2.816e1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.130837950921633e-4
allele num: 8843
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6285
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7100
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.247308e6

FS
type: SiteQuality
SIO_000300: 4.172e0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 5.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40926
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.227747084100675e-4
allele num: 8145
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6045
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.156395e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

QD
type: SiteQuality
SIO_000300: 3.037e1

GenotypeQuality
all individuals: 583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6753
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.902757619738752e-4
allele num: 3445
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8023
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.65e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

DP
type: SiteQuality
SIO_000300: 1.125142e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 1.654e1

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3445
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.776988005330964e-3
allele num: 6753
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.739249657235448e-4
allele num: 8023
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

DP
type: SiteQuality
SIO_000300: 1.125142e6

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

QD
type: SiteQuality
SIO_000300: 1.654e1

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5783
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8157
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38955
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.834845967020325e-4
allele num: 7823
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 465
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.589e1

VQSLOD
type: SiteQuality
SIO_000300: -7.512e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.073677e6

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26604
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 2.772963604852686e-3
allele num: 5770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 1.072847e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 460
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.376083665886886e-4
allele num: 7267
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5267
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.62351e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 5.906e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.642e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 743
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.273322422258593e-4
allele num: 6110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7235
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5261
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 425
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.226e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

FS
type: SiteQuality
SIO_000300: 2.663e0

DP
type: SiteQuality
SIO_000300: 9.56356e5

GenotypeQuality
all individuals: 2589
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.833423058396849e-5
allele num: 35293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.353e0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

DP
type: SiteQuality
SIO_000300: 9.40787e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4891
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6975
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.006524157421605e-5
allele num: 33261
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.299e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.033e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 8.80415e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2025
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4993
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.077804510051788e-5
allele num: 24523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 315
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.59559e5

GenotypeQuality
all individuals: 1521
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4993
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2025
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 315
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

DP
type: SiteQuality
SIO_000300: 6.59559e5

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1973
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.15679428025107e-5
allele num: 24057
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4883
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.258e0

DP
type: SiteQuality
SIO_000300: 6.49728e5

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.023e0

GenotypeQuality
all individuals: 404
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22796
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.278688524590164e-3
allele num: 305
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 2.713949701465533e-3
allele num: 5527
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4075
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

DP
type: SiteQuality
SIO_000300: 6.29073e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.067e1

GenotypeQuality
all individuals: 2880
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4645
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3327
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5567
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.539e-1

QD
type: SiteQuality
SIO_000300: 2.246e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.27233e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

GenotypeQuality
all individuals: 339
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.660700969425801e-5
allele num: 21456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3887
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 293
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

FS
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.429e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.25e-2

DP
type: SiteQuality
SIO_000300: 6.05205e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.321401938851603e-5
allele num: 21456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 293
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3887
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.429e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.25e-2

FS
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 6.05205e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 281
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1673
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2957
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5369
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20066
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.719608376393799e-4
allele num: 3677
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.81723e5

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
SIO_000300: 1.148e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19302
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 2.127659574468085e-3
allele num: 2820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.59e0

QD
type: SiteQuality
SIO_000300: 1.749e1

DP
type: SiteQuality
SIO_000300: 5.692e5

VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5177
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2621
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.582226191805292e-5
allele num: 17914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.303e0

QD
type: SiteQuality
SIO_000300: 2.507e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 5.44489e5

GenotypeQuality
all individuals: 73
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2341
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11911
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4789
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2189
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 203
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.965e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 5.203e1

DP
type: SiteQuality
SIO_000300: 4.64105e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1113
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1573
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2273
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 197
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

DP
type: SiteQuality
SIO_000300: 4.62097e5

QD
type: SiteQuality
SIO_000300: 1.079e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.015e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 32
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 197
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4779
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.397952655150352e-4
allele num: 1563
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2275
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

DP
type: SiteQuality
SIO_000300: 4.63962e5

FS
type: SiteQuality
SIO_000300: 4.818e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.11e-1