X-99934353-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099934353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099934353
    reference: chr 0
allele count: 1
allele frequency: 1.160644854281039e-5
allele num: 86159
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1615A>T
  hgvsp: ENSP00000263033.5:p.Thr539Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1615A>T
  hgvsp: ENSP00000362080.1:p.Thr539Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1615A>T
  hgvsp: ENSP00000276141.6:p.Thr539Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1615A>T
  hgvsp: ENSP00000390252.1:p.Thr539Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1621A>T
  hgvsp: ENSP00000403556.2:p.Thr541Ser
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Thr539Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-99934391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099934391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099934391
    reference: chr 0
allele count: 1
allele frequency: 1.159151501101194e-5
allele num: 86270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1577G>A
  hgvsp: ENSP00000390252.1:p.Gly526Glu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1577G>A
  hgvsp: ENSP00000362080.1:p.Gly526Glu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1583G>A
  hgvsp: ENSP00000403556.2:p.Gly528Glu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1577G>A
  hgvsp: ENSP00000276141.6:p.Gly526Glu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1577G>A
  hgvsp: ENSP00000263033.5:p.Gly526Glu
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly526Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

X-99934398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099934398
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099934398
    reference: chr 0
allele count: 36
allele frequency: 4.182739229446484e-4
allele num: 86068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1570G>A
  hgvsp: ENSP00000276141.6:p.Glu524Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1570G>A
  hgvsp: ENSP00000263033.5:p.Glu524Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1576G>A
  hgvsp: ENSP00000403556.2:p.Glu526Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1570G>A
  hgvsp: ENSP00000362080.1:p.Glu524Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1570G>A
  hgvsp: ENSP00000390252.1:p.Glu524Lys
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu524Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

X-99934424-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099934424
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099934424
    reference: chr 0
allele count: 1
allele frequency: 1.192904603418865e-5
allele num: 83829
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1559-15T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1559-15T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1565-15T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1559-15T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1559-15T>A
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-99934429-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099934429
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099934429
    reference: chr 0
allele count: 2
allele frequency: 2.39595562690179e-5
allele num: 83474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1565-20A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1559-20A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1559-20A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1559-20A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1559-20A>G
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 323
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

X-99936173-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936173
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936173
    reference: chr 0
allele count: 1
allele frequency: 1.427775953397393e-5
allele num: 70039
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1558+51T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1564+51T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1558+51T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1558+51T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1558+51T>A
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
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  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-99936198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936198
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936198
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 71938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1558+26G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1558+26G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1558+26G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1558+26G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1564+26G>A
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-99936223-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936223
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936223
    reference: chr 0
allele count: 2
allele frequency: 2.475921661838619e-5
allele num: 80778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1558+1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1558+1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1564+1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1558+1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1558+1G>C
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1558+1G>C
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

X-99936232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936232
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936232
    reference: chr 0
allele count: 2
allele frequency: 2.406043982484e-5
allele num: 83124
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1550G>A
  hgvsp: ENSP00000390252.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1550G>A
  hgvsp: ENSP00000362080.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1556G>A
  hgvsp: ENSP00000403556.2:p.Arg519Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1550G>A
  hgvsp: ENSP00000263033.5:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1550G>A
  hgvsp: ENSP00000276141.6:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11478
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genotype depth: GenotypeDepth
  all individuals: 122
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 479
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genotype depth: GenotypeDepth
  all individuals: 3386
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4667
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 633
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genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg517Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-99936242-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936242
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936242
    reference: chr 0
allele count: 1
allele frequency: 1.173199432171475e-5
allele num: 85237
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1540G>T
  hgvsp: ENSP00000362080.1:p.Gly514Ter
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1546G>T
  hgvsp: ENSP00000403556.2:p.Gly516Ter
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1540G>T
  hgvsp: ENSP00000276141.6:p.Gly514Ter
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1540G>T
  hgvsp: ENSP00000263033.5:p.Gly514Ter
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1540G>T
  hgvsp: ENSP00000390252.1:p.Gly514Ter
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
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genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 256
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 366
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1142
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2217
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 2663
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 519
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly514Ter
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-99936268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936268
    reference: chr 0
allele count: 1
allele frequency: 1.15629661320722e-5
allele num: 86483
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1520A>G
  hgvsp: ENSP00000403556.2:p.Tyr507Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1514A>G
  hgvsp: ENSP00000263033.5:p.Tyr505Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1514A>G
  hgvsp: ENSP00000362080.1:p.Tyr505Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1514A>G
  hgvsp: ENSP00000390252.1:p.Tyr505Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1514A>G
  hgvsp: ENSP00000276141.6:p.Tyr505Cys
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
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genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 13093
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5030
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  variant carriers: 0
hgvs: p.Tyr505Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

X-99936269-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936269
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936269
    reference: chr 0
allele count: 1
allele frequency: 1.156162926479599e-5
allele num: 86493
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1513T>A
  hgvsp: ENSP00000263033.5:p.Tyr505Asn
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1513T>A
  hgvsp: ENSP00000390252.1:p.Tyr505Asn
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1513T>A
  hgvsp: ENSP00000362080.1:p.Tyr505Asn
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1519T>A
  hgvsp: ENSP00000403556.2:p.Tyr507Asn
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1513T>A
  hgvsp: ENSP00000276141.6:p.Tyr505Asn
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13099
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr505Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

X-99936273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936273
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936273
    reference: chr 0
allele count: 1
allele frequency: 1.156269873388449e-5
allele num: 86485
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1509G>A
  hgvsp: ENST00000276141.6:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1509G>A
  hgvsp: ENST00000455616.1:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1515G>A
  hgvsp: ENST00000454200.2:c.1515G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1509G>A
  hgvsp: ENST00000263033.5:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1509G>A
  hgvsp: ENST00000372989.1:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13086
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 366
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genotype depth: GenotypeDepth
  all individuals: 598
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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genotype quality: GenotypeQuality
  all individuals: 1387
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1515
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 521
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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genotype quality: GenotypeQuality
  all individuals: 96
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genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu503Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

X-99936275-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936275
    reference: chr 0
allele count: 8
allele frequency: 9.247485839787308e-5
allele num: 86510
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1507T>C
  hgvsp: ENST00000455616.1:c.1507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1513T>C
  hgvsp: ENST00000454200.2:c.1513T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1507T>C
  hgvsp: ENST00000263033.5:c.1507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1507T>C
  hgvsp: ENST00000372989.1:c.1507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1507T>C
  hgvsp: ENST00000276141.6:c.1507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
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genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 596
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2216
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
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genotype quality: GenotypeQuality
  all individuals: 1686
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 125
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genotype quality: GenotypeQuality
  all individuals: 45918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu503Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-99936284-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936284
    reference: chr 0
allele count: 2
allele frequency: 2.316047895870487e-5
allele num: 86354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1498G>T
  hgvsp: ENSP00000263033.5:p.Val500Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1498G>T
  hgvsp: ENSP00000390252.1:p.Val500Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1504G>T
  hgvsp: ENSP00000403556.2:p.Val502Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1498G>T
  hgvsp: ENSP00000362080.1:p.Val500Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1498G>T
  hgvsp: ENSP00000276141.6:p.Val500Leu
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val500Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

X-99936290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936290
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936290
    reference: chr 0
allele count: 1
allele frequency: 1.159931332065142e-5
allele num: 86212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1492G>A
  hgvsp: ENSP00000362080.1:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1492G>A
  hgvsp: ENSP00000263033.5:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1498G>A
  hgvsp: ENSP00000403556.2:p.Glu500Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1492G>A
  hgvsp: ENSP00000390252.1:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1492G>A
  hgvsp: ENSP00000276141.6:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 256
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 76
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genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 521
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu498Lys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-99936298-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936298
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936298
    reference: chr 0
allele count: 1
allele frequency: 1.163900463232384e-5
allele num: 85918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1484A>T
  hgvsp: ENSP00000362080.1:p.His495Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1484A>T
  hgvsp: ENSP00000276141.6:p.His495Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1484A>T
  hgvsp: ENSP00000263033.5:p.His495Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1484A>T
  hgvsp: ENSP00000390252.1:p.His495Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1490A>T
  hgvsp: ENSP00000403556.2:p.His497Leu
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
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genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
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genotype depth: GenotypeDepth
  all individuals: 1774
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 594
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 912
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 453
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2871
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
  all individuals: 520
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His495Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-99936299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936299
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936299
    reference: chr 0
allele count: 1
allele frequency: 1.165378922956799e-5
allele num: 85809
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1483C>T
  hgvsp: ENSP00000276141.6:p.His495Tyr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1483C>T
  hgvsp: ENSP00000390252.1:p.His495Tyr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1489C>T
  hgvsp: ENSP00000403556.2:p.His497Tyr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1483C>T
  hgvsp: ENSP00000362080.1:p.His495Tyr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1483C>T
  hgvsp: ENSP00000263033.5:p.His495Tyr
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1138
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30
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genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His495Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

X-99936315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936315
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936315
    reference: chr 0
allele count: 1
allele frequency: 1.182494353589462e-5
allele num: 84567
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1473G>A
  hgvsp: ENST00000454200.2:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1467G>A
  hgvsp: ENST00000263033.5:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1467G>A
  hgvsp: ENST00000455616.1:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1467G>A
  hgvsp: ENST00000372989.1:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1467G>A
  hgvsp: ENST00000276141.6:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
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genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 68
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro489Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

X-99936316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936316
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936316
    reference: chr 0
allele count: 1
allele frequency: 1.18375415793648e-5
allele num: 84477
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1472C>T
  hgvsp: ENSP00000403556.2:p.Pro491Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1466C>T
  hgvsp: ENSP00000362080.1:p.Pro489Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1466C>T
  hgvsp: ENSP00000390252.1:p.Pro489Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1466C>T
  hgvsp: ENSP00000263033.5:p.Pro489Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1466C>T
  hgvsp: ENSP00000276141.6:p.Pro489Leu
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 71
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  variant carriers: 0
hgvs: p.Pro489Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-99936323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936323
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936323
    reference: chr 0
allele count: 1
allele frequency: 1.194785954096324e-5
allele num: 83697
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1459G>A
  hgvsp: ENSP00000362080.1:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1459G>A
  hgvsp: ENSP00000390252.1:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1459G>A
  hgvsp: ENSP00000276141.6:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1459G>A
  hgvsp: ENSP00000263033.5:p.Glu487Lys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1465G>A
  hgvsp: ENSP00000403556.2:p.Glu489Lys
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45
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  variant carriers: 0
hgvs: p.Glu487Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

X-99936328-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936328
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936328
    reference: chr 0
allele count: 2
allele frequency: 2.405609882245396e-5
allele num: 83139
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1454G>C
  hgvsp: ENSP00000263033.5:p.Ser485Thr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1454G>C
  hgvsp: ENSP00000362080.1:p.Ser485Thr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1454G>C
  hgvsp: ENSP00000276141.6:p.Ser485Thr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1460G>C
  hgvsp: ENSP00000403556.2:p.Ser487Thr
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1454G>C
  hgvsp: ENSP00000390252.1:p.Ser485Thr
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 243
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hgvs: p.Ser485Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-99936333-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936333
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936333
    reference: chr 0
allele count: 1
allele frequency: 1.21279743857181e-5
allele num: 82454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1450-1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1450-1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1456-1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1450-1G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1450-1G>C
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.1450-1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

X-99936349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936349
    reference: chr 0
allele count: 1
allele frequency: 1.248720061936515e-5
allele num: 80082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1456-17G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1450-17G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1450-17G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1450-17G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1450-17G>A
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-99936359-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936359
    reference: chr 0
allele count: 2
allele frequency: 2.545792441542241e-5
allele num: 78561
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1450-27G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1456-27G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1450-27G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1450-27G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1450-27G>T
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 332
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  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-99936363-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936363
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936363
    reference: chr 0
allele count: 1
allele frequency: 1.286636988240138e-5
allele num: 77722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1450-31G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1456-31G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1450-31G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1450-31G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1450-31G>T
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-99936367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936367
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936367
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 77177
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1450-35C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1450-35C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1456-35C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1450-35C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1450-35C>T
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14042
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-99936378-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099936378
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099936377
    reference: chr 0
allele count: 1
allele frequency: 1.336148152107106e-5
allele num: 74842
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1450-47delA
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1450-47delA
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1450-47delA
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1450-47delA
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1456-47delA
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9884
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14583
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5143
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11757
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10163
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: AT
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-99940946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099940946
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099940946
    reference: chr 0
allele count: 6
allele frequency: 2.377084901549067e-4
allele num: 25241
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1449+41A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1455+41A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1449+41A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1449+41A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2357A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1449+41A>G
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 220
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genotype quality: GenotypeQuality
  all individuals: 406
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17084
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16057
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-99940948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099940948
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099940948
    reference: chr 0
allele count: 2
allele frequency: 7.897334649555775e-5
allele num: 25325
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1449+39G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1455+39G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1449+39G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1449+39G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1449+39G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2355G>A
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-99940954-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099940954
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099940954
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 25993
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1449+33T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1449+33T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2349T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1449+33T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1455+33T>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1449+33T>A
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25020
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20340
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

X-99940965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099940965
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099940965
    reference: chr 0
allele count: 1
allele frequency: 3.628842036506151e-5
allele num: 27557
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1449+22T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1449+22T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1449+22T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2338T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1449+22T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1455+22T>C
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24762
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14972
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-99940984-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099940984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099940984
    reference: chr 0
allele count: 1
allele frequency: 3.132243312660528e-5
allele num: 31926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1449+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2319A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1449+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1449+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1455+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1449+3A>G
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30914
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
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genotype quality: GenotypeQuality
  all individuals: 7056
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1449+3A>G
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-99941000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941000
    reference: chr 0
allele count: 5
allele frequency: 1.35589543334418e-4
allele num: 36876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1436C>T
  hgvsp: ENSP00000263033.5:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1436C>T
  hgvsp: ENSP00000390252.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1442C>T
  hgvsp: ENSP00000403556.2:p.Pro481Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1436C>T
  hgvsp: ENSP00000362080.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1436C>T
  hgvsp: ENSP00000276141.6:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2303C>T
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 359
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genotype quality: GenotypeQuality
  all individuals: 438
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genotype quality: GenotypeQuality
  all individuals: 2091
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genotype quality: GenotypeQuality
  all individuals: 922
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genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Pro479Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

X-99941051-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941051
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941051
    reference: chr 0
allele count: 1
allele frequency: 1.845154623957488e-5
allele num: 54196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1391A>C
  hgvsp: ENSP00000403556.2:p.Glu464Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1385A>C
  hgvsp: ENSP00000276141.6:p.Glu462Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1385A>C
  hgvsp: ENSP00000362080.1:p.Glu462Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1385A>C
  hgvsp: ENSP00000263033.5:p.Glu462Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2252A>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1385A>C
  hgvsp: ENSP00000390252.1:p.Glu462Ala
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 150
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 24481
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genotype quality: GenotypeQuality
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19323
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 269
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genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu462Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-99941064-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941064
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941064
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 59865
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1372C>A
  hgvsp: ENSP00000362080.1:p.Leu458Ile
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1372C>A
  hgvsp: ENSP00000390252.1:p.Leu458Ile
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1378C>A
  hgvsp: ENSP00000403556.2:p.Leu460Ile
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1372C>A
  hgvsp: ENSP00000263033.5:p.Leu458Ile
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2239C>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1372C>A
  hgvsp: ENSP00000276141.6:p.Leu458Ile
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21774
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu458Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-99941070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941070
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941070
    reference: chr 0
allele count: 1
allele frequency: 1.609943008017516e-5
allele num: 62114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1366A>G
  hgvsp: ENSP00000362080.1:p.Thr456Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1366A>G
  hgvsp: ENSP00000276141.6:p.Thr456Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1372A>G
  hgvsp: ENSP00000403556.2:p.Thr458Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2233A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1366A>G
  hgvsp: ENSP00000263033.5:p.Thr456Ala
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1366A>G
  hgvsp: ENSP00000390252.1:p.Thr456Ala
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr456Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

X-99941072-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941072
    reference: chr 0
allele count: 4
allele frequency: 6.359603796683467e-5
allele num: 62897
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1370A>G
  hgvsp: ENSP00000403556.2:p.Asn457Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1364A>G
  hgvsp: ENSP00000362080.1:p.Asn455Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1364A>G
  hgvsp: ENSP00000263033.5:p.Asn455Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1364A>G
  hgvsp: ENSP00000390252.1:p.Asn455Ser
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2231A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1364A>G
  hgvsp: ENSP00000276141.6:p.Asn455Ser
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 312
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  variant carriers: 0
hgvs: p.Asn455Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

X-99941084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941084
    reference: chr 0
allele count: 2
allele frequency: 3.020372411918389e-5
allele num: 66217
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2219G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1358G>A
  hgvsp: ENSP00000403556.2:p.Arg453His
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1352G>A
  hgvsp: ENSP00000362080.1:p.Arg451His
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1352G>A
  hgvsp: ENSP00000390252.1:p.Arg451His
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1352G>A
  hgvsp: ENSP00000263033.5:p.Arg451His
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1352G>A
  hgvsp: ENSP00000276141.6:p.Arg451His
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19586
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  variant carriers: 0
hgvs: p.Arg451His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-99941090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941090
    reference: chr 0
allele count: 1
allele frequency: 1.481481481481481e-5
allele num: 67500
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1346A>G
  hgvsp: ENSP00000390252.1:p.His449Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2213A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1346A>G
  hgvsp: ENSP00000362080.1:p.His449Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1346A>G
  hgvsp: ENSP00000263033.5:p.His449Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1352A>G
  hgvsp: ENSP00000403556.2:p.His451Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1346A>G
  hgvsp: ENSP00000276141.6:p.His449Arg
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27999
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17780
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 867
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genotype depth: GenotypeDepth
  all individuals: 81
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 18923
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 316
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His449Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

X-99941091-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941091
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941091
    reference: chr 0
allele count: 3
allele frequency: 4.437935472418231e-5
allele num: 67599
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1345C>G
  hgvsp: ENSP00000276141.6:p.His449Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1345C>G
  hgvsp: ENSP00000263033.5:p.His449Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1351C>G
  hgvsp: ENSP00000403556.2:p.His451Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1345C>G
  hgvsp: ENSP00000362080.1:p.His449Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1345C>G
  hgvsp: ENSP00000390252.1:p.His449Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2212C>G
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His449Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-99941100-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941100
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941098
    reference: chr 0
allele count: 1
allele frequency: 1.466748804599724e-5
allele num: 68178
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1334_1335delCA
  hgvsp: ENSP00000390252.1:p.Ser445CysfsTer26
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2201_*2202delCA
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1334_1335delCA
  hgvsp: ENSP00000276141.6:p.Ser445CysfsTer26
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1340_1341delCA
  hgvsp: ENSP00000403556.2:p.Ser447CysfsTer26
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1334_1335delCA
  hgvsp: ENSP00000263033.5:p.Ser445CysfsTer26
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1334_1335delCA
  hgvsp: ENSP00000362080.1:p.Ser445CysfsTer26
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27706
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 296
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser445CysfsTer26
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: CTG
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-99941106-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941106
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941106
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 68385
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1336T>G
  hgvsp: ENSP00000403556.2:p.Phe446Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1330T>G
  hgvsp: ENSP00000362080.1:p.Phe444Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1330T>G
  hgvsp: ENSP00000390252.1:p.Phe444Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2197T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1330T>G
  hgvsp: ENSP00000263033.5:p.Phe444Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1330T>G
  hgvsp: ENSP00000276141.6:p.Phe444Val
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe444Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-99941108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941108
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941108
    reference: chr 0
allele count: 1
allele frequency: 1.465115597620652e-5
allele num: 68254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2195A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1334A>G
  hgvsp: ENSP00000403556.2:p.Gln445Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1328A>G
  hgvsp: ENSP00000362080.1:p.Gln443Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1328A>G
  hgvsp: ENSP00000263033.5:p.Gln443Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1328A>G
  hgvsp: ENSP00000276141.6:p.Gln443Arg
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1328A>G
  hgvsp: ENSP00000390252.1:p.Gln443Arg
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln443Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-99941112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941112
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 67968
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1324C>T
  hgvsp: ENST00000455616.1:c.1324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1324C>T
  hgvsp: ENST00000276141.6:c.1324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2191C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1330C>T
  hgvsp: ENST00000454200.2:c.1330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1324C>T
  hgvsp: ENST00000372989.1:c.1324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1324C>T
  hgvsp: ENST00000263033.5:c.1324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu442Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-99941125-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941125
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941125
    reference: chr 0
allele count: 140
allele frequency: 2.09835279305745e-3
allele num: 66719
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1311G>C
  hgvsp: ENST00000372989.1:c.1311G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1311G>C
  hgvsp: ENST00000455616.1:c.1311G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2178G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1317G>C
  hgvsp: ENST00000454200.2:c.1317G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1311G>C
  hgvsp: ENST00000276141.6:c.1311G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1311G>C
  hgvsp: ENST00000263033.5:c.1311G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23508
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6316
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17909
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu437Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-99941152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941152
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941152
    reference: chr 0
allele count: 12
allele frequency: 2.028774789091954e-4
allele num: 59149
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1288-4A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2151A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1288-4A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1294-4A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1288-4A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1288-4A>G
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13738
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28718
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1288-4A>G
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-99941158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941158
    reference: chr 0
allele count: 1
allele frequency: 1.757160428747145e-5
allele num: 56910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2145C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1294-10C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1288-10C>T
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

X-99941176-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941176
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941176
    reference: chr 0
allele count: 7
allele frequency: 1.354227123234668e-4
allele num: 51690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1288-28A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1288-28A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1288-28A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1294-28A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2127A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1288-28A>G
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9781
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26299
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 339
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10352
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genotype quality: GenotypeQuality
  all individuals: 429
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-99941199-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941199
    reference: chr 0
allele count: 1
allele frequency: 2.481081751643717e-5
allele num: 40305
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1294-51T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1288-51T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2104T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1288-51T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1288-51T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1288-51T>G
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-99941199-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941199
    reference: chr 0
allele count: 1
allele frequency: 2.481081751643717e-5
allele num: 40305
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*2104T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1288-51T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1288-51T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1294-51T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1288-51T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1288-51T>C
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23939
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10168
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-99941650-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941650
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941650
    reference: chr 0
allele count: 1
allele frequency: 1.590507849156235e-5
allele num: 62873
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1287+26G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1293+26G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1653G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1287+26G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1287+26G>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1287+26G>T
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-99941659-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941659
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941659
    reference: chr 0
allele count: 1
allele frequency: 1.509866980718999e-5
allele num: 66231
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1293+17C>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1644C>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1287+17C>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1287+17C>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1287+17C>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1287+17C>G
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6213
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-99941673-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941673
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941673
    reference: chr 0
allele count: 3
allele frequency: 4.147025891264981e-5
allele num: 72341
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1293+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1287+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1287+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1630A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1287+3A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1287+3A>G
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27248
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6270
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1287+3A>G
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

X-99941680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941680
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941680
    reference: chr 0
allele count: 1
allele frequency: 1.334774890214765e-5
allele num: 74919
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1283T>C
  hgvsp: ENSP00000390252.1:p.Leu428Pro
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1283T>C
  hgvsp: ENSP00000263033.5:p.Leu428Pro
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1283T>C
  hgvsp: ENSP00000362080.1:p.Leu428Pro
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1289T>C
  hgvsp: ENSP00000403556.2:p.Leu430Pro
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1623T>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1283T>C
  hgvsp: ENSP00000276141.6:p.Leu428Pro
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu428Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

X-99941682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941682
    reference: chr 0
allele count: 3
allele frequency: 3.975089439512389e-5
allele num: 75470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1281G>A
  hgvsp: ENST00000372989.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1621G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1281G>A
  hgvsp: ENST00000455616.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1287G>A
  hgvsp: ENST00000454200.2:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1281G>A
  hgvsp: ENST00000276141.6:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1281G>A
  hgvsp: ENST00000263033.5:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
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genotype depth: GenotypeDepth
  all individuals: 29967
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genotype depth: GenotypeDepth
  all individuals: 300
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6310
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr427Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-99941683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941683
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941683
    reference: chr 0
allele count: 3
allele frequency: 3.943580508196075e-5
allele num: 76073
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1620C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1280C>T
  hgvsp: ENSP00000263033.5:p.Thr427Met
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1280C>T
  hgvsp: ENSP00000390252.1:p.Thr427Met
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1280C>T
  hgvsp: ENSP00000362080.1:p.Thr427Met
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1286C>T
  hgvsp: ENSP00000403556.2:p.Thr429Met
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1280C>T
  hgvsp: ENSP00000276141.6:p.Thr427Met
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2076
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 501
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genotype quality: GenotypeQuality
  all individuals: 1400
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genotype quality: GenotypeQuality
  all individuals: 28475
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genotype quality: GenotypeQuality
  all individuals: 497
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr427Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-99941685-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941685
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941685
    reference: chr 0
allele count: 1
allele frequency: 1.303950971443474e-5
allele num: 76690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1278G>C
  hgvsp: ENSP00000276141.6:p.Glu426Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1284G>C
  hgvsp: ENSP00000403556.2:p.Glu428Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1278G>C
  hgvsp: ENSP00000263033.5:p.Glu426Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1278G>C
  hgvsp: ENSP00000390252.1:p.Glu426Asp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1618G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1278G>C
  hgvsp: ENSP00000362080.1:p.Glu426Asp
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28932
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
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genotype quality: GenotypeQuality
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu426Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-99941694-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941694
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941694
    reference: chr 0
allele count: 1
allele frequency: 1.264366362797284e-5
allele num: 79091
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1609A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1275A>G
  hgvsp: ENST00000454200.2:c.1275A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1269A>G
  hgvsp: ENST00000263033.5:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1269A>G
  hgvsp: ENST00000372989.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1269A>G
  hgvsp: ENST00000455616.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1269A>G
  hgvsp: ENST00000276141.6:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu423Leu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-99941697-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941697
    reference: chr 0
allele count: 99
allele frequency: 1.243328100470958e-3
allele num: 79625
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1266A>G
  hgvsp: ENST00000455616.1:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1266A>G
  hgvsp: ENST00000372989.1:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1606A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1266A>G
  hgvsp: ENST00000263033.5:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1272A>G
  hgvsp: ENST00000454200.2:c.1272A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1266A>G
  hgvsp: ENST00000276141.6:c.1266A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33766
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7989
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 3
hgvs: p.Pro422Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-99941705-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941705
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941705
    reference: chr 0
allele count: 84999
allele frequency: 9.753743760399335e-1
allele num: 87145
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1258A>G
  hgvsp: ENSP00000362080.1:p.Ile420Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1598A>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1258A>G
  hgvsp: ENSP00000390252.1:p.Ile420Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1258A>G
  hgvsp: ENSP00000263033.5:p.Ile420Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1258A>G
  hgvsp: ENSP00000276141.6:p.Ile420Val
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1264A>G
  hgvsp: ENSP00000403556.2:p.Ile422Val
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 3.25e1
  variant carriers: 5861
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 4319
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.25e1
  variant carriers: 7524
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 1.75e1
  variant carriers: 5581
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 9.75e1
  variant carriers: 6141
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 4.75e1
  variant carriers: 3818
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.25e1
  variant carriers: 828
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 1.25e1
  variant carriers: 2446
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 3.75e1
  variant carriers: 5114
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 5.75e1
  variant carriers: 2457
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 2.75e1
  variant carriers: 7433
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 1213
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.25e1
  variant carriers: 3205
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 6.25e1
  variant carriers: 1850
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 8.25e1
  variant carriers: 2872
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 224
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 7.75e1
  variant carriers: 3143
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 1564
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 4.25e1
  variant carriers: 762
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 5.25e1
  variant carriers: 2307
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 1414
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 4.75e1
  variant carriers: 1887
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.25e1
  variant carriers: 644
hgvs: p.Ile420Val
num of homozygotes: 25552
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-99941713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941713
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941713
    reference: chr 0
allele count: 2
allele frequency: 2.34672924611323e-5
allele num: 85225
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1250G>A
  hgvsp: ENSP00000362080.1:p.Arg417Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1250G>A
  hgvsp: ENSP00000276141.6:p.Arg417Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1250G>A
  hgvsp: ENSP00000263033.5:p.Arg417Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1590G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1256G>A
  hgvsp: ENSP00000403556.2:p.Arg419Gln
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1250G>A
  hgvsp: ENSP00000390252.1:p.Arg417Gln
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg417Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-99941714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941714
    reference: chr 0
allele count: 3
allele frequency: 3.521829473016916e-5
allele num: 85183
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1249C>T
  hgvsp: ENSP00000276141.6:p.Arg417Trp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1249C>T
  hgvsp: ENSP00000362080.1:p.Arg417Trp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1589C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1255C>T
  hgvsp: ENSP00000403556.2:p.Arg419Trp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1249C>T
  hgvsp: ENSP00000263033.5:p.Arg417Trp
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1249C>T
  hgvsp: ENSP00000390252.1:p.Arg417Trp
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15103
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6486
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg417Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-99941744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941744
    reference: chr 0
allele count: 1
allele frequency: 1.194044107989349e-5
allele num: 83749
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1559C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1219C>T
  hgvsp: ENSP00000362080.1:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1225C>T
  hgvsp: ENSP00000403556.2:p.Arg409Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1219C>T
  hgvsp: ENSP00000263033.5:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1219C>T
  hgvsp: ENSP00000390252.1:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1219C>T
  hgvsp: ENSP00000276141.6:p.Arg407Cys
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 213
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genotype depth: GenotypeDepth
  all individuals: 190
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
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genotype quality: GenotypeQuality
  all individuals: 272
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 288
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genotype quality: GenotypeQuality
  all individuals: 579
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 825
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genotype quality: GenotypeQuality
  all individuals: 1309
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genotype quality: GenotypeQuality
  all individuals: 751
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg407Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-99941746-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941746
    reference: chr 0
allele count: 1
allele frequency: 1.195657372423358e-5
allele num: 83636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1217C>G
  hgvsp: ENSP00000263033.5:p.Ser406Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1557C>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1223C>G
  hgvsp: ENSP00000403556.2:p.Ser408Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1217C>G
  hgvsp: ENSP00000362080.1:p.Ser406Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1217C>G
  hgvsp: ENSP00000276141.6:p.Ser406Cys
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1217C>G
  hgvsp: ENSP00000390252.1:p.Ser406Cys
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser406Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-99941760-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941760
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941760
    reference: chr 0
allele count: 1
allele frequency: 1.214653580798756e-5
allele num: 82328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1203T>G
  hgvsp: ENST00000263033.5:c.1203T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1203T>G
  hgvsp: ENST00000276141.6:c.1203T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1203T>G
  hgvsp: ENST00000372989.1:c.1203T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1543T>G
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1209T>G
  hgvsp: ENST00000454200.2:c.1209T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1203T>G
  hgvsp: ENST00000455616.1:c.1203T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14519
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Leu401Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-99941782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941782
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941782
    reference: chr 0
allele count: 1
allele frequency: 1.273950264981655e-5
allele num: 78496
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1185-4C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1185-4C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1521C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1185-4C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1191-4C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1185-4C>T
  variant of: http://identifiers.org/hgnc/15588
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1185-4C>T
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

X-99941787-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941785
    reference: chr 0
allele count: 1
allele frequency: 1.293008701948564e-5
allele num: 77339
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1185-11_1185-10delTT
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1514_*1515delTT
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1185-11_1185-10delTT
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1191-11_1191-10delTT
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1185-11_1185-10delTT
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1185-11_1185-10delTT
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4942
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: CAA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-99941810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941810
    reference: chr 0
allele count: 4
allele frequency: 5.634437683119225e-5
allele num: 70992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1185-32G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1185-32G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1185-32G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1191-32G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1493G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1185-32G>A
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-99941814-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941814
    reference: chr 0
allele count: 1
allele frequency: 1.433506787654639e-5
allele num: 69759
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1191-36G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1489G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1185-36G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1185-36G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1185-36G>C
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1185-36G>C
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-99941814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941814
    reference: chr 0
allele count: 7
allele frequency: 1.003454751358248e-4
allele num: 69759
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1185-36G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1191-36G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1185-36G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1185-36G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1185-36G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1489G>A
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

X-99941825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099941825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099941825
    reference: chr 0
allele count: 1
allele frequency: 1.529777111474858e-5
allele num: 65369
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1191-47G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1185-47G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1185-47G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1185-47G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1185-47G>A
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1478G>A
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 683
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6401
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14452
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genotype quality: GenotypeQuality
  all individuals: 4341
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4929
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-99942013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099942013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099942013
    reference: chr 0
allele count: 187
allele frequency: 2.305681594002762e-3
allele num: 81104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1184+51C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1184+51C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1190+51C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1290C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1184+51C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1184+51C>T
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 25
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1108
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 4.75e1
  variant carriers: 14
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-99942028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24099942028
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24099942028
    reference: chr 0
allele count: 1
allele frequency: 1.223945265167742e-5
allele num: 81703
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000276141
  ensembl transcript: ENST00000276141
  gene symbol: SYTL4
  hgvsc: ENST00000276141.6:c.1184+36C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000263033
  ensembl transcript: ENST00000263033
  gene symbol: SYTL4
  hgvsc: ENST00000263033.5:c.1184+36C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000390252
  ensembl transcript: ENST00000455616
  gene symbol: SYTL4
  hgvsc: ENST00000455616.1:c.1184+36C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362072
  ensembl transcript: ENST00000372981
  gene symbol: SYTL4
  hgvsc: ENST00000372981.1:c.*1275C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000362080
  ensembl transcript: ENST00000372989
  gene symbol: SYTL4
  hgvsc: ENST00000372989.1:c.1184+36C>T
  variant of: http://identifiers.org/hgnc/15588
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102362
  ensembl protein: ENSP00000403556
  ensembl transcript: ENST00000454200
  gene symbol: SYTL4
  hgvsc: ENST00000454200.2:c.1190+36C>T
  variant of: http://identifiers.org/hgnc/15588
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17180
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 941
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.623376623376623e-3
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8389
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.595424e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.352e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6605
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.108770375993758e-5
allele num: 47421
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.594919e6

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.579e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 1657
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 443
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1444
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1055
bin: 8.25e1
variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 1.631321370309951e-3
allele num: 613
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.189767995240928e-4
allele num: 8405
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.494505494505495e-4
allele num: 47320
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.083541012027305e-4
allele num: 9229
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.513653802753329e-4
allele num: 4431
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.279831045406547e-4
allele num: 9470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.852e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.196e0

DP
type: SiteQuality
SIO_000300: 1.588272e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

VQSLOD
type: SiteQuality
SIO_000300: 1.186e1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 529
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3872
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.167504768510491e-5
allele num: 46136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8333
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.465263e6

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.254e1

FS
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: -7.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 29259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3874
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45951
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.08499151627333e-4
allele num: 6483
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.438493e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 7.201e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.02e1

GenotypeQuality
all individuals: 3140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3929
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3245
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.633935626613286e-5
allele num: 37966
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.226e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.057517e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23165
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7585
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39061
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7899
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

QD
type: SiteQuality
SIO_000300: 2.81e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.377e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

DP
type: SiteQuality
SIO_000300: 1.174041e6

GenotypeQuality
all individuals: 529
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1458
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8589
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 563
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6269
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3913
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8841
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.495695371681615e-5
allele num: 44487
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 3.117e0

QD
type: SiteQuality
SIO_000300: 1.647e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

DP
type: SiteQuality
SIO_000300: 1.382938e6

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 41575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6419
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180264248026861e-5
allele num: 45866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.13045444268596e-4
allele num: 8846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9043
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.695e0

DP
type: SiteQuality
SIO_000300: 1.432249e6

QD
type: SiteQuality
SIO_000300: 3.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

GenotypeQuality
all individuals: 1393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44679
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.090393632101189e-4
allele num: 9171
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4291
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.921e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

FS
type: SiteQuality
SIO_000300: 1.455e0

VQSLOD
type: SiteQuality
SIO_000300: -8.651e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.696e1

DP
type: SiteQuality
SIO_000300: 1.475227e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.295e0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.183291918116199e-4
allele num: 8451
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4439
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.451e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-1

DP
type: SiteQuality
SIO_000300: 1.498669e6

MQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 1526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101325936666036e-5
allele num: 47589
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.498444e6

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.346e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.151e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8451
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4445
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101193477895445e-5
allele num: 47592
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9511
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.36e-2

MQ
type: SiteQuality
SIO_000300: 5.861e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.888e1

DP
type: SiteQuality
SIO_000300: 1.498224e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 8.409544833385893e-4
allele num: 9513
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8455
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47599
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.832e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

QD
type: SiteQuality
SIO_000300: 2.225e1

MQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

DP
type: SiteQuality
SIO_000300: 1.497544e6

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.988e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47573
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.366583836232399e-4
allele num: 8451
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.656e0

QD
type: SiteQuality
SIO_000300: 9.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.49206e6

MQ
type: SiteQuality
SIO_000300: 5.897e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 44649
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9341
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.10508588750421e-5
allele num: 47504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: -9.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.415e0

DP
type: SiteQuality
SIO_000300: 1.488109e6

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 1336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 1452
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9179
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.108948267498998e-5
allele num: 47417
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.92e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.57e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.47e0

DP
type: SiteQuality
SIO_000300: 1.478913e6

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 911
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GenotypeQuality
all individuals: 1449
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47385
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9231
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.096250822188117e-4
allele num: 9122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4425
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

DP
type: SiteQuality
SIO_000300: 1.475365e6

QD
type: SiteQuality
SIO_000300: 3.076e1

VQSLOD
type: SiteQuality
SIO_000300: -3.016e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 840
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GenotypeQuality
all individuals: 40712
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.13001618812303e-5
allele num: 46948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4387
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8373
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
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MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 2.707e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

QD
type: SiteQuality
SIO_000300: 1.836e1

DP
type: SiteQuality
SIO_000300: 1.438209e6

VQSLOD
type: SiteQuality
SIO_000300: -3.923e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
all individuals: 517
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GenotypeQuality
all individuals: 884
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.13196887325445e-5
allele num: 46905
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9183
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.991e0

QD
type: SiteQuality
SIO_000300: 2.967e1

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.435981e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.471e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.146337275439463e-5
allele num: 46591
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8329
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4349
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6537
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.84e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.410977e6

FS
type: SiteQuality
SIO_000300: 8.44e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 2.406738868832732e-4
allele num: 8310
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.177273617975571e-5
allele num: 45929
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 577
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6467
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4311
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.215e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 1.365739e6

QD
type: SiteQuality
SIO_000300: 1.724e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.62e-2

FS
type: SiteQuality
SIO_000300: 1.443e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.58553987632789e-4
allele num: 6307
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8857
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44757
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.66e0

FS
type: SiteQuality
SIO_000300: 6.026e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.260306e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeQuality
all individuals: 1004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44023
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.97000297000297e-4
allele num: 6734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 1.191747e6

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

QD
type: SiteQuality
SIO_000300: 1.686e1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
all individuals: 1215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14613
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 748
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.294841196989168e-5
allele num: 43576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4159
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

QD
type: SiteQuality
SIO_000300: 2.348e1

VQSLOD
type: SiteQuality
SIO_000300: -2.468e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

DP
type: SiteQuality
SIO_000300: 1.160505e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 938
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 537
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8667
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8053
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6093
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4135
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

DP
type: SiteQuality
SIO_000300: 1.142767e6

QD
type: SiteQuality
SIO_000300: 1.39e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 2245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.676164934629568e-4
allele num: 5966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4049
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 523
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.101395e6

MQ
type: SiteQuality
SIO_000300: 6.236e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

QD
type: SiteQuality
SIO_000300: 2.806e1

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4869
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2353
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.218917601170161e-3
allele num: 4102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2189
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.141836880445651e-5
allele num: 14002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1671
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.42524e5

FS
type: SiteQuality
SIO_000300: 8.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeQuality
all individuals: 1400
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2359
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1685
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 9.086778736937755e-4
allele num: 2201
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

FS
type: SiteQuality
SIO_000300: 2.945e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 5.48136e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeQuality
all individuals: 307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4165
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2425
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 791
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.228e1

MQ
type: SiteQuality
SIO_000300: 5.516e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

DP
type: SiteQuality
SIO_000300: 5.64674e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.607e-1

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2043
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 887
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2595
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15209
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.339181286549708e-4
allele num: 4275
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

QD
type: SiteQuality
SIO_000300: 9.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

FS
type: SiteQuality
SIO_000300: 1.952e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

DP
type: SiteQuality
SIO_000300: 6.02194e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.9e-3

GenotypeQuality
all individuals: 10878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28734
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.164033758926639e-4
allele num: 4621
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 231
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2739
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17433
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.692e0

VQSLOD
type: SiteQuality
SIO_000300: -4.084e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 6.74499e5

MQRankSum
type: SiteQuality
SIO_000300: -1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.87e-1

GenotypeQuality
all individuals: 8275
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9199
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.40964195094446e-3
allele num: 3547
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1491
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4963
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19893
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 2.904e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.359e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.708e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

DP
type: SiteQuality
SIO_000300: 7.37487e5

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.576789656259855e-4
allele num: 6342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28799
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2459
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

DP
type: SiteQuality
SIO_000300: 9.48184e5

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e0

QD
type: SiteQuality
SIO_000300: 6.38e0

FS
type: SiteQuality
SIO_000300: 1.274e0

VQSLOD
type: SiteQuality
SIO_000300: -1.056e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2767
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4677
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32015
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.026215e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 6.346e0

VQSLOD
type: SiteQuality
SIO_000300: -2.533e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeQuality
all individuals: 354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2881
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.472970982471645e-4
allele num: 6789
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6785
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4883
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 443
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33347
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.27e0

DP
type: SiteQuality
SIO_000300: 1.057267e6

VQSLOD
type: SiteQuality
SIO_000300: -1.288e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21448
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variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.651313930488839e-4
allele num: 7078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6841
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.06694e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.372e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3117
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7083
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.823360734085261e-4
allele num: 5231
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35797
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.754e-1

FS
type: SiteQuality
SIO_000300: 9.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 1.115731e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.393e1

GenotypeQuality
all individuals: 481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 31867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36541
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.40548137737175e-4
allele num: 7115
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7611
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7197
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.593e0

QD
type: SiteQuality
SIO_000300: 2.934e1

VQSLOD
type: SiteQuality
SIO_000300: -2.678e0

DP
type: SiteQuality
SIO_000300: 1.133897e6

GenotypeQuality
all individuals: 1850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5357
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.192020971573687e-5
allele num: 36621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3203
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7201
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.536e1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 1.136172e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.7009507346586e-5
allele num: 37024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7695
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3263
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.178e1

DP
type: SiteQuality
SIO_000300: 1.141606e6

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 2.881e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5419
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7717
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37177
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 483
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.396e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 1.141979e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.673e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3271
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5411
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.692442314423413e-5
allele num: 37141
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.138402e6

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.868e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 29793
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5385
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7245
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37059
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 3.692e0

QD
type: SiteQuality
SIO_000300: 1.671e1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 1.132229e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 335
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 227
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5287
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36477
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.637826431020839e-4
allele num: 7582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6527
num of homozygotes: 0

African
type: Population
allele count: 137
allele frequency: 1.910472737414587e-2
allele num: 7171
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.169197396963124e-3
allele num: 461
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.54e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

DP
type: SiteQuality
SIO_000300: 1.103982e6

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6547
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5421
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4599
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 417
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 3.697882962004253e-4
allele num: 32451
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.358e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 9.2041e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5119
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31285
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2809
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 401
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.57257430413587e-4
allele num: 6359
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.613e1

DP
type: SiteQuality
SIO_000300: 8.70252e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1830
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 674
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2593
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5921
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3911
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.61849710982659e-3
allele num: 4325
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.46009e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

QD
type: SiteQuality
SIO_000300: 2.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4933
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3051
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.425366199052971e-5
allele num: 22597
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 2.179e1

DP
type: SiteQuality
SIO_000300: 6.55479e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.381e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.51e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 758
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.277613897082924e-4
allele num: 3051
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22597
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4933
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.55479e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.381e0

QD
type: SiteQuality
SIO_000300: 2.179e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3201
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5057
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 455
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5101
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.335648457326032e-4
allele num: 7487
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.53082e6

VQSLOD
type: SiteQuality
SIO_000300: -2.137e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 2.042e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1040
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GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36119
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.807337791433219e-4
allele num: 5533
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.616639e6

VQSLOD
type: SiteQuality
SIO_000300: -2.069e0

FS
type: SiteQuality
SIO_000300: 1.898e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

QD
type: SiteQuality
SIO_000300: 2.236e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.763643206624012e-4
allele num: 7971
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8325
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39599
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3673
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

DP
type: SiteQuality
SIO_000300: 1.735698e6

FS
type: SiteQuality
SIO_000300: 4.097e0

QD
type: SiteQuality
SIO_000300: 2.009e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.556e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.239157372986369e-4
allele num: 8070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3821
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5969
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7036
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e0

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.8e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.175e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 1.783861e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
all individuals: 514
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.168360789811894e-4
allele num: 8559
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.842380514260811e-5
allele num: 41302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3843
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 4.154e0

DP
type: SiteQuality
SIO_000300: 1.797073e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.05e1

GenotypeQuality
all individuals: 236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 578
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 766
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6326
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.365374112506827e-4
allele num: 7324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.807692307692308e-5
allele num: 41600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8597
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.782e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 1.424e0

QD
type: SiteQuality
SIO_000300: 2.108e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.345e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.80668e6

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10749
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6331
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8141
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.385268581242248e-5
allele num: 41924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.791e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

FS
type: SiteQuality
SIO_000300: 1.623e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.463e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

DP
type: SiteQuality
SIO_000300: 1.817435e6

GenotypeQuality
all individuals: 4280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 558
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6209
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8073
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.315672471285661e-5
allele num: 43184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.862971e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.909e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.166e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
all individuals: 6443
bin: 9.75e1
variant carriers: 78

GenotypeQuality
all individuals: 667
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4369
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1943
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 952
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 3.527336860670194e-3
allele num: 567
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 3.513145965548504e-3
allele num: 8824
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.843787842092516e-4
allele num: 8258
num of homozygotes: 0

East Asian
type: Population
allele count: 59
allele frequency: 9.452098686318487e-3
allele num: 6242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.904646827314783e-5
allele num: 43449
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4073
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.88e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

FS
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.876824e6

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.08e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 82

GenotypeQuality
all individuals: 3147
bin: 6.75e1
variant carriers: 3114

GenotypeQuality
all individuals: 1102
bin: 3.75e1
variant carriers: 1094

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 17

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 225

GenotypeQuality
all individuals: 34024
bin: 9.75e1
variant carriers: 33927

GenotypeQuality
all individuals: 3224
bin: 6.25e1
variant carriers: 2818

GenotypeQuality
all individuals: 1398
bin: 8.75e1
variant carriers: 1396

GenotypeQuality
all individuals: 2483
bin: 9.25e1
variant carriers: 2474

East Asian
type: Population
allele count: 6616
allele frequency: 1.0e0
allele num: 6616
num of homozygotes: 2310

European (Finnish)
type: Population
allele count: 4500
allele frequency: 1.0e0
allele num: 4500
num of homozygotes: 1222

Latino
type: Population
allele count: 9213
allele frequency: 9.918182796856497e-1
allele num: 9289
num of homozygotes: 3470

African
type: Population
allele count: 6411
allele frequency: 7.61039886039886e-1
allele num: 8424
num of homozygotes: 1917

European (Non-Finnish)
type: Population
allele count: 47708
allele frequency: 9.990785726252304e-1
allele num: 47752
num of homozygotes: 14592

Other
type: Population
allele count: 621
allele frequency: 9.888535031847133e-1
allele num: 628
num of homozygotes: 173

South Asian
type: Population
allele count: 9930
allele frequency: 9.993961352657005e-1
allele num: 9936
num of homozygotes: 1868

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.205e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.495e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 3.483e1

DP
type: SiteQuality
SIO_000300: 3.264347e6

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.144036362856714e-5
allele num: 46641
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9187
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4381
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 1.773786e6

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.53e-2

FS
type: SiteQuality
SIO_000300: 5.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.672e1

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 5008
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 832
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.434040362879877e-5
allele num: 46627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8403
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.362e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 2.898e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 9.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.46e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.097e0

DP
type: SiteQuality
SIO_000300: 1.772277e6

GenotypeQuality
all individuals: 5853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4964
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variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.195457262402869e-4
allele num: 8365
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6433
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4301
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9231
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.404e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.339e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 2.188e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.375e0

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

DP
type: SiteQuality
SIO_000300: 1.744676e6

GenotypeQuality
all individuals: 544
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 451
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variant carriers: 0

GenotypeQuality
all individuals: 1307
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GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
all individuals: 4964
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GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.189189780862103e-5
allele num: 45679
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8361
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9203
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6431
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4291
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.028e1

FS
type: SiteQuality
SIO_000300: 2.884e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.09e1

VQSLOD
type: SiteQuality
SIO_000300: -1.139e0

MQRankSum
type: SiteQuality
SIO_000300: -1.844e0

DP
type: SiteQuality
SIO_000300: 1.737404e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5515
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4215
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6369
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8961
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.227121890381061e-5
allele num: 44901
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8959
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8319
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

DP
type: SiteQuality
SIO_000300: 1.697452e6

QD
type: SiteQuality
SIO_000300: 3.091e1

GenotypeQuality
all individuals: 1993
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24773
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8157
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8225
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.337049241627521e-5
allele num: 42789
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3993
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.551238e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.348e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.999e1

GenotypeQuality
all individuals: 18205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6005
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.233045622688039e-4
allele num: 8110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 1.734e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.033e0

FS
type: SiteQuality
SIO_000300: 3.803e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.497241e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4934
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 487
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5988
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 7.218913553510197e-4
allele num: 5541
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38481
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7039
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7797
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3641
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.752e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.678e0

DP
type: SiteQuality
SIO_000300: 1.249862e6

FS
type: SiteQuality
SIO_000300: 1.4638e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7743
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.460706982179375e-4
allele num: 6846
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.218012e6

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 8.52e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
all individuals: 1369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18543
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5460
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 9.040423608420509e-4
allele num: 7743
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

DP
type: SiteQuality
SIO_000300: 1.218012e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4641
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4738
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5113
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35285
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.332445036642239e-4
allele num: 7505
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.609e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

QD
type: SiteQuality
SIO_000300: 1.777e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 3.912e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

DP
type: SiteQuality
SIO_000300: 1.161821e6

GenotypeQuality
all individuals: 1404
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 3274
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5143
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2069
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2307
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2888
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1563
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 2.430428970713331e-4
allele num: 8229
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.502626970227671e-3
allele num: 571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 120
allele frequency: 2.631867529334357e-3
allele num: 45595
num of homozygotes: 0

South Asian
type: Population
allele count: 52
allele frequency: 7.680945347119645e-3
allele num: 6770
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.297065611605671e-4
allele num: 9099
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.589464123524069e-3
allele num: 4404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.553760099440646e-4
allele num: 6436
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.482398e6

QD
type: SiteQuality
SIO_000300: 1.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.994e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1