http://identifiers.org/exac.variant/17-73552098-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552098
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552098
    reference: chr 17
allele count: 1
allele frequency: 8.522533578782301e-6
allele num: 117336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-29A>C
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-73552098-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552098
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552098
    reference: chr 17
allele count: 1
allele frequency: 8.522533578782301e-6
allele num: 117336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-29A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-29A>G
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

17-73552110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552110
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552110
    reference: chr 17
allele count: 1
allele frequency: 8.449799739746167e-6
allele num: 118346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-17C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-17C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-73552111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552111
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552111
    reference: chr 17
allele count: 4
allele frequency: 3.375926269770268e-5
allele num: 118486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-16G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-16G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73552116-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552116
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552116
    reference: chr 17
allele count: 3
allele frequency: 2.524614996213078e-5
allele num: 118830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-11T>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-11T>G
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

17-73552119-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552119
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552119
    reference: chr 17
allele count: 3
allele frequency: 2.522025691035039e-5
allele num: 118952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-8C>G
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.76-8C>G
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

17-73552119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552119
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552119
    reference: chr 17
allele count: 2
allele frequency: 1.681350460690026e-5
allele num: 118952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-8C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.76-8C>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

17-73552120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552120
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552120
    reference: chr 17
allele count: 17
allele frequency: 1.428019421064126e-4
allele num: 119046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-7G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.76-7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

17-73552120-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552120
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552120
    reference: chr 17
allele count: 27
allele frequency: 2.268030845219495e-4
allele num: 119046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-7G>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: c.76-7G>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-73552124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552124
    reference: chr 17
allele count: 10
allele frequency: 8.390387971539803e-5
allele num: 119184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.79-3C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.76-3C>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

17-73552128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552128
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552128
    reference: chr 17
allele count: 429
allele frequency: 3.595313521395887e-3
allele num: 119322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.77C>T
  hgvsp: ENSP00000167462.5:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.77C>T
  hgvsp: ENSP00000464603.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.77C>T
  hgvsp: ENSP00000376333.3:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.77C>T
  hgvsp: ENSP00000464397.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.80C>T
  hgvsp: ENSP00000464483.1:p.Thr27Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.77C>T
  hgvsp: ENSP00000463721.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.77C>T
  hgvsp: ENSP00000461953.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.77C>T
  hgvsp: ENSP00000463390.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.77C>T
  hgvsp: ENSP00000364375.4:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.77C>T
  hgvsp: ENSP00000464598.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.77C>T
  hgvsp: ENSP00000464451.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 9.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
hgvs: p.Thr26Met
num of homozygotes: 11
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

17-73552129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552129
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552129
    reference: chr 17
allele count: 8
allele frequency: 6.701514542286557e-5
allele num: 119376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.78G>A
  hgvsp: ENST00000580925.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.78G>A
  hgvsp: ENST00000577200.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.78G>A
  hgvsp: ENST00000167462.5:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.78G>A
  hgvsp: ENST00000392550.3:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.81G>A
  hgvsp: ENST00000583658.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.78G>A
  hgvsp: ENST00000375227.4:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.78G>A
  hgvsp: ENST00000581713.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.78G>A
  hgvsp: ENST00000580578.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.78G>A
  hgvsp: ENST00000578536.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.78G>A
  hgvsp: ENST00000578363.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.78G>A
  hgvsp: ENST00000579392.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.78G>A
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

17-73552132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552132
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552132
    reference: chr 17
allele count: 1
allele frequency: 8.371563473194253e-6
allele num: 119452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.81G>A
  hgvsp: ENST00000580925.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.81G>A
  hgvsp: ENST00000167462.5:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.81G>A
  hgvsp: ENST00000392550.3:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.81G>A
  hgvsp: ENST00000579392.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.84G>A
  hgvsp: ENST00000583658.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.81G>A
  hgvsp: ENST00000577200.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.81G>A
  hgvsp: ENST00000581713.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.81G>A
  hgvsp: ENST00000578536.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.81G>A
  hgvsp: ENST00000375227.4:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.81G>A
  hgvsp: ENST00000578363.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.81G>A
  hgvsp: ENST00000580578.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val27Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-73552135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552135
    reference: chr 17
allele count: 1
allele frequency: 8.368200836820084e-6
allele num: 119500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.84G>A
  hgvsp: ENST00000579392.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.84G>A
  hgvsp: ENST00000580578.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.84G>A
  hgvsp: ENST00000577200.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.87G>A
  hgvsp: ENST00000583658.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.84G>A
  hgvsp: ENST00000578363.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.84G>A
  hgvsp: ENST00000392550.3:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.84G>A
  hgvsp: ENST00000580925.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.84G>A
  hgvsp: ENST00000167462.5:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.84G>A
  hgvsp: ENST00000578536.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.84G>A
  hgvsp: ENST00000581713.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.84G>A
  hgvsp: ENST00000375227.4:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu28Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-73552135-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552134
    reference: chr 17
allele count: 1
allele frequency: 8.368200836820084e-6
allele num: 119500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.85delC
  hgvsp: ENSP00000464397.1:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.85delC
  hgvsp: ENSP00000376333.3:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.88delC
  hgvsp: ENSP00000464483.1:p.His30MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.85delC
  hgvsp: ENSP00000463721.1:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.85delC
  hgvsp: ENSP00000167462.5:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.85delC
  hgvsp: ENSP00000464603.1:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.85delC
  hgvsp: ENSP00000461953.1:p.His29MetfsTer?
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.85delC
  hgvsp: ENSP00000463390.1:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.85delC
  hgvsp: ENSP00000364375.4:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.85delC
  hgvsp: ENSP00000464598.1:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.85delC
  hgvsp: ENSP00000464451.1:p.His29MetfsTer48
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His29MetfsTer48
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: GC
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

17-73552144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552144
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552144
    reference: chr 17
allele count: 2
allele frequency: 1.672128954584977e-5
allele num: 119608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.93C>T
  hgvsp: ENST00000578536.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.93C>T
  hgvsp: ENST00000580578.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.93C>T
  hgvsp: ENST00000577200.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.96C>T
  hgvsp: ENST00000583658.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.93C>T
  hgvsp: ENST00000579392.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.93C>T
  hgvsp: ENST00000581713.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.93C>T
  hgvsp: ENST00000392550.3:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.93C>T
  hgvsp: ENST00000167462.5:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.93C>T
  hgvsp: ENST00000580925.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.93C>T
  hgvsp: ENST00000578363.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.93C>T
  hgvsp: ENST00000375227.4:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe31Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

17-73552146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552146
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552146
    reference: chr 17
allele count: 3
allele frequency: 2.507271086149834e-5
allele num: 119652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.95C>T
  hgvsp: ENSP00000464451.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.95C>T
  hgvsp: ENSP00000464598.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.95C>T
  hgvsp: ENSP00000167462.5:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.95C>T
  hgvsp: ENSP00000463390.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.95C>T
  hgvsp: ENSP00000463721.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.95C>T
  hgvsp: ENSP00000464603.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.95C>T
  hgvsp: ENSP00000464397.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.95C>T
  hgvsp: ENSP00000364375.4:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.95C>T
  hgvsp: ENSP00000461953.1:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.95C>T
  hgvsp: ENSP00000376333.3:p.Pro32Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.98C>T
  hgvsp: ENSP00000464483.1:p.Pro33Leu
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro32Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-73552147-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552147
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552147
    reference: chr 17
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.96G>A
  hgvsp: ENST00000579392.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.96G>A
  hgvsp: ENST00000577200.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.96G>A
  hgvsp: ENST00000392550.3:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.96G>A
  hgvsp: ENST00000167462.5:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.96G>A
  hgvsp: ENST00000578536.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.99G>A
  hgvsp: ENST00000583658.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.96G>A
  hgvsp: ENST00000578363.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.96G>A
  hgvsp: ENST00000581713.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.96G>A
  hgvsp: ENST00000580925.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.96G>A
  hgvsp: ENST00000580578.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.96G>A
  hgvsp: ENST00000375227.4:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro32Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-73552147-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552147
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552147
    reference: chr 17
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.96G>T
  hgvsp: ENST00000578363.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.96G>T
  hgvsp: ENST00000577200.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.96G>T
  hgvsp: ENST00000580578.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.96G>T
  hgvsp: ENST00000579392.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.96G>T
  hgvsp: ENST00000580925.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.99G>T
  hgvsp: ENST00000583658.1:c.99G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.96G>T
  hgvsp: ENST00000167462.5:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.96G>T
  hgvsp: ENST00000581713.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.96G>T
  hgvsp: ENST00000392550.3:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.96G>T
  hgvsp: ENST00000578536.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.96G>T
  hgvsp: ENST00000375227.4:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro32Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-73552148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552148
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552148
    reference: chr 17
allele count: 1
allele frequency: 8.355475342992263e-6
allele num: 119682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.97C>T
  hgvsp: ENSP00000464598.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.97C>T
  hgvsp: ENSP00000464397.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.97C>T
  hgvsp: ENSP00000463390.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.97C>T
  hgvsp: ENSP00000461953.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.100C>T
  hgvsp: ENSP00000464483.1:p.His34Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.97C>T
  hgvsp: ENSP00000464603.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.97C>T
  hgvsp: ENSP00000167462.5:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.97C>T
  hgvsp: ENSP00000376333.3:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.97C>T
  hgvsp: ENSP00000463721.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.97C>T
  hgvsp: ENSP00000364375.4:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.97C>T
  hgvsp: ENSP00000464451.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His33Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-73552150-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552150
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552150
    reference: chr 17
allele count: 1
allele frequency: 8.35421888053467e-6
allele num: 119700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.99C>G
  hgvsp: ENSP00000167462.5:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.99C>G
  hgvsp: ENSP00000463390.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.99C>G
  hgvsp: ENSP00000464451.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.99C>G
  hgvsp: ENSP00000364375.4:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.99C>G
  hgvsp: ENSP00000464598.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.99C>G
  hgvsp: ENSP00000376333.3:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.99C>G
  hgvsp: ENSP00000464397.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.99C>G
  hgvsp: ENSP00000464603.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.102C>G
  hgvsp: ENSP00000464483.1:p.His34Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.99C>G
  hgvsp: ENSP00000461953.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.99C>G
  hgvsp: ENSP00000463721.1:p.His33Gln
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His33Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-73552159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552159
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552159
    reference: chr 17
allele count: 3
allele frequency: 2.504299046696829e-5
allele num: 119794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.108C>T
  hgvsp: ENST00000578363.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.108C>T
  hgvsp: ENST00000375227.4:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.108C>T
  hgvsp: ENST00000578536.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.108C>T
  hgvsp: ENST00000577200.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.111C>T
  hgvsp: ENST00000583658.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.108C>T
  hgvsp: ENST00000579392.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.108C>T
  hgvsp: ENST00000580578.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.108C>T
  hgvsp: ENST00000167462.5:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.108C>T
  hgvsp: ENST00000580925.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.108C>T
  hgvsp: ENST00000392550.3:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.108C>T
  hgvsp: ENST00000581713.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ser36Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-73552160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552160
    reference: chr 17
allele count: 3
allele frequency: 2.504382669671926e-5
allele num: 119790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.109G>A
  hgvsp: ENSP00000376333.3:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.109G>A
  hgvsp: ENSP00000463721.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.109G>A
  hgvsp: ENSP00000464451.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.109G>A
  hgvsp: ENSP00000464603.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.109G>A
  hgvsp: ENSP00000364375.4:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.109G>A
  hgvsp: ENSP00000464397.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.109G>A
  hgvsp: ENSP00000463390.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.112G>A
  hgvsp: ENSP00000464483.1:p.Ala38Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.109G>A
  hgvsp: ENSP00000464598.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.109G>A
  hgvsp: ENSP00000461953.1:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.109G>A
  hgvsp: ENSP00000167462.5:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala37Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-73552160-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552160
    reference: chr 17
allele count: 1
allele frequency: 8.347942232239753e-6
allele num: 119790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.109G>T
  hgvsp: ENSP00000364375.4:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.109G>T
  hgvsp: ENSP00000376333.3:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.109G>T
  hgvsp: ENSP00000463390.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.109G>T
  hgvsp: ENSP00000463721.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.109G>T
  hgvsp: ENSP00000464598.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.109G>T
  hgvsp: ENSP00000167462.5:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.109G>T
  hgvsp: ENSP00000464451.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.109G>T
  hgvsp: ENSP00000464603.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.109G>T
  hgvsp: ENSP00000461953.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.109G>T
  hgvsp: ENSP00000464397.1:p.Ala37Ser
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.112G>T
  hgvsp: ENSP00000464483.1:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala37Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-73552165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552165
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552165
    reference: chr 17
allele count: 2
allele frequency: 1.669449081803005e-5
allele num: 119800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.114C>T
  hgvsp: ENST00000578363.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.114C>T
  hgvsp: ENST00000579392.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.114C>T
  hgvsp: ENST00000375227.4:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.114C>T
  hgvsp: ENST00000578536.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.114C>T
  hgvsp: ENST00000577200.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.114C>T
  hgvsp: ENST00000581713.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.117C>T
  hgvsp: ENST00000583658.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.114C>T
  hgvsp: ENST00000167462.5:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.114C>T
  hgvsp: ENST00000580925.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.114C>T
  hgvsp: ENST00000392550.3:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.114C>T
  hgvsp: ENST00000580578.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu38Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-73552168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552168
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552168
    reference: chr 17
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000461953
  ensembl transcript: ENST00000580925
  gene symbol: LLGL2
  hgvsc: ENST00000580925.1:c.117C>T
  hgvsp: ENST00000580925.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.120C>T
  hgvsp: ENST00000583658.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.117C>T
  hgvsp: ENST00000577200.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.117C>T
  hgvsp: ENST00000578363.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.117C>T
  hgvsp: ENST00000167462.5:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.117C>T
  hgvsp: ENST00000375227.4:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.117C>T
  hgvsp: ENST00000578536.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.117C>T
  hgvsp: ENST00000392550.3:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.117C>T
  hgvsp: ENST00000579392.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.117C>T
  hgvsp: ENST00000581713.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.117C>T
  hgvsp: ENST00000580578.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly39Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-73552171-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552171
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552171
    reference: chr 17
allele count: 3
allele frequency: 2.507857954925433e-5
allele num: 119624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.120C>A
  hgvsp: ENSP00000464598.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.120C>A
  hgvsp: ENSP00000464397.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.120C>A
  hgvsp: ENSP00000463390.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.120C>A
  hgvsp: ENSP00000464451.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.120C>A
  hgvsp: ENSP00000464603.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.120C>A
  hgvsp: ENSP00000167462.5:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.120C>A
  hgvsp: ENSP00000463721.1:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.123C>A
  hgvsp: ENSP00000464483.1:p.Tyr41Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.120C>A
  hgvsp: ENSP00000376333.3:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.120C>A
  hgvsp: ENSP00000364375.4:p.Tyr40Ter
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr40Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/17-73552175-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552175
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552175
    reference: chr 17
allele count: 2
allele frequency: 1.667528222915173e-5
allele num: 119938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.124C>A
  hgvsp: ENSP00000464598.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.124C>A
  hgvsp: ENSP00000463721.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.124C>A
  hgvsp: ENSP00000464603.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.124C>A
  hgvsp: ENSP00000464451.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.124C>A
  hgvsp: ENSP00000464397.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.124C>A
  hgvsp: ENSP00000364375.4:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.127C>A
  hgvsp: ENSP00000464483.1:p.Pro43Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.124C>A
  hgvsp: ENSP00000376333.3:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.124C>A
  hgvsp: ENSP00000167462.5:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.124C>A
  hgvsp: ENSP00000463390.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro42Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-73552176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552176
    reference: chr 17
allele count: 15
allele frequency: 1.250541901490646e-4
allele num: 119948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.125C>T
  hgvsp: ENSP00000463390.1:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.125C>T
  hgvsp: ENSP00000464397.1:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.125C>T
  hgvsp: ENSP00000464451.1:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.125C>T
  hgvsp: ENSP00000463721.1:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.125C>T
  hgvsp: ENSP00000464598.1:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.125C>T
  hgvsp: ENSP00000464603.1:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.125C>T
  hgvsp: ENSP00000376333.3:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.125C>T
  hgvsp: ENSP00000364375.4:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.128C>T
  hgvsp: ENSP00000464483.1:p.Pro43Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.125C>T
  hgvsp: ENSP00000167462.5:p.Pro42Leu
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro42Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-73552177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552177
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552177
    reference: chr 17
allele count: 29
allele frequency: 2.417311283008802e-4
allele num: 119968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.129G>A
  hgvsp: ENST00000583658.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.126G>A
  hgvsp: ENST00000578363.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.126G>A
  hgvsp: ENST00000375227.4:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.126G>A
  hgvsp: ENST00000577200.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.126G>A
  hgvsp: ENST00000392550.3:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.126G>A
  hgvsp: ENST00000578536.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.126G>A
  hgvsp: ENST00000167462.5:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.126G>A
  hgvsp: ENST00000579392.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.126G>A
  hgvsp: ENST00000580578.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.126G>A
  hgvsp: ENST00000581713.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12157
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Pro42Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

17-73552180-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552180
    reference: chr 17
allele count: 1
allele frequency: 8.331805835596807e-6
allele num: 120022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.129C>T
  hgvsp: ENST00000578363.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.129C>T
  hgvsp: ENST00000167462.5:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.129C>T
  hgvsp: ENST00000392550.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.129C>T
  hgvsp: ENST00000375227.4:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.129C>T
  hgvsp: ENST00000579392.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.129C>T
  hgvsp: ENST00000578536.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.129C>T
  hgvsp: ENST00000580578.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.129C>T
  hgvsp: ENST00000577200.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.132C>T
  hgvsp: ENST00000583658.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.129C>T
  hgvsp: ENST00000581713.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser43Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-73552181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552181
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552181
    reference: chr 17
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.130C>T
  hgvsp: ENST00000167462.5:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.130C>T
  hgvsp: ENST00000580578.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.130C>T
  hgvsp: ENST00000392550.3:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.133C>T
  hgvsp: ENST00000583658.1:c.133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.130C>T
  hgvsp: ENST00000375227.4:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.130C>T
  hgvsp: ENST00000581713.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.130C>T
  hgvsp: ENST00000579392.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.130C>T
  hgvsp: ENST00000577200.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.130C>T
  hgvsp: ENST00000578363.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.130C>T
  hgvsp: ENST00000578536.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu44Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ

17-73552184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552184
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552184
    reference: chr 17
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.133C>T
  hgvsp: ENSP00000464451.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.133C>T
  hgvsp: ENSP00000464598.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.136C>T
  hgvsp: ENSP00000464483.1:p.Arg46Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.133C>T
  hgvsp: ENSP00000464397.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.133C>T
  hgvsp: ENSP00000463721.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.133C>T
  hgvsp: ENSP00000464603.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.133C>T
  hgvsp: ENSP00000364375.4:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.133C>T
  hgvsp: ENSP00000376333.3:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.133C>T
  hgvsp: ENSP00000463390.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.133C>T
  hgvsp: ENSP00000167462.5:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg45Cys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-73552185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552185
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552185
    reference: chr 17
allele count: 60560
allele frequency: 5.026476984113809e-1
allele num: 120482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.134G>A
  hgvsp: ENSP00000464397.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.134G>A
  hgvsp: ENSP00000464598.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.134G>A
  hgvsp: ENSP00000463390.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.134G>A
  hgvsp: ENSP00000464603.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.137G>A
  hgvsp: ENSP00000464483.1:p.Arg46His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.134G>A
  hgvsp: ENSP00000464451.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.134G>A
  hgvsp: ENSP00000364375.4:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.134G>A
  hgvsp: ENSP00000376333.3:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.134G>A
  hgvsp: ENSP00000167462.5:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.134G>A
  hgvsp: ENSP00000463721.1:p.Arg45His
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.25e1
  variant carriers: 791
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 4.25e1
  variant carriers: 663
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 3.25e1
  variant carriers: 690
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.25e1
  variant carriers: 1534
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 2.75e1
  variant carriers: 697
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 1971
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 729
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.25e1
  variant carriers: 608
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 544
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.25e1
  variant carriers: 2013
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 8.25e1
  variant carriers: 1873
genotype depth: GenotypeDepth
  all individuals: 26274
  bin: 9.75e1
  variant carriers: 26134
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 691
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 904
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.75e1
  variant carriers: 1370
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 6.25e1
  variant carriers: 1104
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 1687
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 5
hgvs: p.Arg45His
num of homozygotes: 16249
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-73552189-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552189
    reference: chr 17
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.138C>G
  hgvsp: ENSP00000364375.4:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.138C>G
  hgvsp: ENSP00000464603.1:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.138C>G
  hgvsp: ENSP00000463390.1:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.138C>G
  hgvsp: ENSP00000376333.3:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.141C>G
  hgvsp: ENSP00000464483.1:p.Ile47Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.138C>G
  hgvsp: ENSP00000167462.5:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.138C>G
  hgvsp: ENSP00000464598.1:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.138C>G
  hgvsp: ENSP00000464397.1:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.138C>G
  hgvsp: ENSP00000463721.1:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.138C>G
  hgvsp: ENSP00000464451.1:p.Ile46Met
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4213
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile46Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

17-73552196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552196
    reference: chr 17
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.145A>G
  hgvsp: ENSP00000464397.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.145A>G
  hgvsp: ENSP00000464451.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.145A>G
  hgvsp: ENSP00000464598.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.145A>G
  hgvsp: ENSP00000464603.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.145A>G
  hgvsp: ENSP00000364375.4:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.145A>G
  hgvsp: ENSP00000376333.3:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.145A>G
  hgvsp: ENSP00000167462.5:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.145A>G
  hgvsp: ENSP00000463721.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.148A>G
  hgvsp: ENSP00000464483.1:p.Ile50Val
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.145A>G
  hgvsp: ENSP00000463390.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19175
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile49Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-73552196-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552196
    reference: chr 17
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.145A>T
  hgvsp: ENSP00000364375.4:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.145A>T
  hgvsp: ENSP00000376333.3:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.145A>T
  hgvsp: ENSP00000464598.1:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.148A>T
  hgvsp: ENSP00000464483.1:p.Ile50Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.145A>T
  hgvsp: ENSP00000464603.1:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.145A>T
  hgvsp: ENSP00000463390.1:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.145A>T
  hgvsp: ENSP00000464397.1:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.145A>T
  hgvsp: ENSP00000167462.5:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.145A>T
  hgvsp: ENSP00000463721.1:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.145A>T
  hgvsp: ENSP00000464451.1:p.Ile49Phe
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19175
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile49Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

17-73552198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552198
    reference: chr 17
allele count: 2
allele frequency: 1.661129568106312e-5
allele num: 120400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.147C>T
  hgvsp: ENST00000579392.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.147C>T
  hgvsp: ENST00000578536.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.147C>T
  hgvsp: ENST00000578363.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.147C>T
  hgvsp: ENST00000580578.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.147C>T
  hgvsp: ENST00000375227.4:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.147C>T
  hgvsp: ENST00000581713.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.147C>T
  hgvsp: ENST00000577200.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.147C>T
  hgvsp: ENST00000392550.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.147C>T
  hgvsp: ENST00000167462.5:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.150C>T
  hgvsp: ENST00000583658.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile49Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

17-73552199-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552199
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552199
    reference: chr 17
allele count: 1
allele frequency: 8.306061763875276e-6
allele num: 120394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.148G>T
  hgvsp: ENSP00000464598.1:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.148G>T
  hgvsp: ENSP00000464451.1:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.151G>T
  hgvsp: ENSP00000464483.1:p.Gly51Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.148G>T
  hgvsp: ENSP00000376333.3:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.148G>T
  hgvsp: ENSP00000464397.1:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.148G>T
  hgvsp: ENSP00000167462.5:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.148G>T
  hgvsp: ENSP00000364375.4:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.148G>T
  hgvsp: ENSP00000463721.1:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.148G>T
  hgvsp: ENSP00000464603.1:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.148G>T
  hgvsp: ENSP00000463390.1:p.Gly50Cys
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly50Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-73552204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552204
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552204
    reference: chr 17
allele count: 1
allele frequency: 8.304958059961797e-6
allele num: 120410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.153C>G
  hgvsp: ENST00000581713.1:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.153C>G
  hgvsp: ENST00000580578.1:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.153C>G
  hgvsp: ENST00000578536.1:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.153C>G
  hgvsp: ENST00000578363.1:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.153C>G
  hgvsp: ENST00000577200.1:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.153C>G
  hgvsp: ENST00000167462.5:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.153C>G
  hgvsp: ENST00000375227.4:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.153C>G
  hgvsp: ENST00000392550.3:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.156C>G
  hgvsp: ENST00000583658.1:c.156C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.153C>G
  hgvsp: ENST00000579392.1:c.153C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr51Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS

17-73552204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552204
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552204
    reference: chr 17
allele count: 6
allele frequency: 4.982974835977079e-5
allele num: 120410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.153C>T
  hgvsp: ENST00000581713.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.153C>T
  hgvsp: ENST00000392550.3:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.153C>T
  hgvsp: ENST00000580578.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.153C>T
  hgvsp: ENST00000375227.4:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.153C>T
  hgvsp: ENST00000167462.5:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.153C>T
  hgvsp: ENST00000577200.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.153C>T
  hgvsp: ENST00000579392.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.153C>T
  hgvsp: ENST00000578363.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.156C>T
  hgvsp: ENST00000583658.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.153C>T
  hgvsp: ENST00000578536.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr51Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

17-73552205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552205
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552205
    reference: chr 17
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.154C>T
  hgvsp: ENSP00000364375.4:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.154C>T
  hgvsp: ENSP00000463721.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.154C>T
  hgvsp: ENSP00000464397.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.154C>T
  hgvsp: ENSP00000464451.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.157C>T
  hgvsp: ENSP00000464483.1:p.Arg53Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.154C>T
  hgvsp: ENSP00000464598.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.154C>T
  hgvsp: ENSP00000167462.5:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.154C>T
  hgvsp: ENSP00000464603.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.154C>T
  hgvsp: ENSP00000376333.3:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.154C>T
  hgvsp: ENSP00000463390.1:p.Arg52Cys
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg52Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-73552206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552206
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552206
    reference: chr 17
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.155G>A
  hgvsp: ENSP00000464598.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.155G>A
  hgvsp: ENSP00000376333.3:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.155G>A
  hgvsp: ENSP00000464397.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.155G>A
  hgvsp: ENSP00000464603.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.155G>A
  hgvsp: ENSP00000167462.5:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.155G>A
  hgvsp: ENSP00000463390.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.155G>A
  hgvsp: ENSP00000464451.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.158G>A
  hgvsp: ENSP00000464483.1:p.Arg53His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.155G>A
  hgvsp: ENSP00000364375.4:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.155G>A
  hgvsp: ENSP00000463721.1:p.Arg52His
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19489
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg52His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-73552206-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552206
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552206
    reference: chr 17
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.155G>T
  hgvsp: ENSP00000463721.1:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.155G>T
  hgvsp: ENSP00000364375.4:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.155G>T
  hgvsp: ENSP00000464397.1:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.155G>T
  hgvsp: ENSP00000464598.1:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.155G>T
  hgvsp: ENSP00000167462.5:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.155G>T
  hgvsp: ENSP00000464603.1:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.158G>T
  hgvsp: ENSP00000464483.1:p.Arg53Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.155G>T
  hgvsp: ENSP00000376333.3:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.155G>T
  hgvsp: ENSP00000463390.1:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.155G>T
  hgvsp: ENSP00000464451.1:p.Arg52Leu
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg52Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-73552216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552216
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552216
    reference: chr 17
allele count: 3
allele frequency: 2.492232541911044e-5
allele num: 120374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.165C>T
  hgvsp: ENST00000579392.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.165C>T
  hgvsp: ENST00000580578.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.165C>T
  hgvsp: ENST00000375227.4:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.165C>T
  hgvsp: ENST00000578363.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.165C>T
  hgvsp: ENST00000167462.5:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.168C>T
  hgvsp: ENST00000583658.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.165C>T
  hgvsp: ENST00000392550.3:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.165C>T
  hgvsp: ENST00000577200.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.165C>T
  hgvsp: ENST00000578536.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.165C>T
  hgvsp: ENST00000581713.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala55Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-73552233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552233
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552233
    reference: chr 17
allele count: 3
allele frequency: 2.497294597519354e-5
allele num: 120130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+9C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18540
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-73552234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552234
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552234
    reference: chr 17
allele count: 69
allele frequency: 5.744447034533285e-4
allele num: 120116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+10G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15886
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14707
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8881
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

17-73552242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552242
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552242
    reference: chr 17
allele count: 2
allele frequency: 1.669337606837607e-5
allele num: 119808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+18G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-73552242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552242
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552242
    reference: chr 17
allele count: 3
allele frequency: 2.50400641025641e-5
allele num: 119808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+18G>C
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17857
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

17-73552242-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552242
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552242
    reference: chr 17
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+18G>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12118
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-73552245-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552245
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552245
    reference: chr 17
allele count: 1
allele frequency: 8.34752412434472e-6
allele num: 119796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+21C>G
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-73552248-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552248
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552248
    reference: chr 17
allele count: 1
allele frequency: 8.350312301680083e-6
allele num: 119756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+24A>C
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-73552251-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552251
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552251
    reference: chr 17
allele count: 1
allele frequency: 8.357151214294072e-6
allele num: 119658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+27C>A
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8245
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73552251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552251
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552251
    reference: chr 17
allele count: 3
allele frequency: 2.507145364288222e-5
allele num: 119658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+27C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16776
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

17-73552269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73552269
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73552269
    reference: chr 17
allele count: 18
allele frequency: 1.50996577410912e-4
allele num: 119208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.176+45G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.173+45G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11662
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11837
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12062
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

17-73554046-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554046
    reference: chr 17
allele count: 3
allele frequency: 5.320280910832092e-5
allele num: 56388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.161C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-190C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-190C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17183
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21778
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-73554054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554054
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554054
    reference: chr 17
allele count: 1
allele frequency: 1.756234632946962e-5
allele num: 56940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.169C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-182C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

17-73554065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554065
    reference: chr 17
allele count: 2
allele frequency: 3.337115397450444e-5
allele num: 59932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.180G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-171G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22906
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-73554065-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554065
    reference: chr 17
allele count: 4
allele frequency: 6.674230794900888e-5
allele num: 59932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-171G>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.180G>T
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-73554068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554068
    reference: chr 17
allele count: 86
allele frequency: 1.410205955660501e-3
allele num: 60984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.183G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-168G>A
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23059
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11080
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-73554073-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554073
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554073
    reference: chr 17
allele count: 1
allele frequency: 1.578233010321644e-5
allele num: 63362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.188G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-163G>C
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-73554078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554078
    reference: chr 17
allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.193C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-158C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

17-73554083-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554083
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554083
    reference: chr 17
allele count: 1
allele frequency: 1.411751418810176e-5
allele num: 70834
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.198C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-153C>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-153C>G
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-73554084-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554084
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554084
    reference: chr 17
allele count: 6
allele frequency: 8.323160581511486e-5
allele num: 72088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.199A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-152A>G
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20450
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-73554094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554094
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554094
    reference: chr 17
allele count: 1
allele frequency: 1.16989166803154e-5
allele num: 85478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.209C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-142C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-73554096-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554096
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554096
    reference: chr 17
allele count: 1
allele frequency: 1.135305737835199e-5
allele num: 88082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.211A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-140A>G
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

17-73554099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554099
    reference: chr 17
allele count: 1
allele frequency: 1.089348351815944e-5
allele num: 91798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.214C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-137C>T
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/17-73554100-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73554100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73554100
    reference: chr 17
allele count: 11
allele frequency: 1.176697118161785e-4
allele num: 93482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000364375
  ensembl transcript: ENST00000375227
  gene symbol: LLGL2
  hgvsc: ENST00000375227.4:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464451
  ensembl transcript: ENST00000578536
  gene symbol: LLGL2
  hgvsc: ENST00000578536.1:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463721
  ensembl transcript: ENST00000579392
  gene symbol: LLGL2
  hgvsc: ENST00000579392.1:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464603
  ensembl transcript: ENST00000578363
  gene symbol: LLGL2
  hgvsc: ENST00000578363.1:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000376333
  ensembl transcript: ENST00000392550
  gene symbol: LLGL2
  hgvsc: ENST00000392550.3:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464483
  ensembl transcript: ENST00000583658
  gene symbol: LLGL2
  hgvsc: ENST00000583658.1:c.177-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000463390
  ensembl transcript: ENST00000581713
  gene symbol: LLGL2
  hgvsc: ENST00000581713.1:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464397
  ensembl transcript: ENST00000577200
  gene symbol: LLGL2
  hgvsc: ENST00000577200.1:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073350
  ensembl transcript: ENST00000545227
  gene symbol: LLGL2
  hgvsc: ENST00000545227.2:n.215A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000167462
  ensembl transcript: ENST00000167462
  gene symbol: LLGL2
  hgvsc: ENST00000167462.5:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073350
  ensembl protein: ENSP00000464598
  ensembl transcript: ENST00000580578
  gene symbol: LLGL2
  hgvsc: ENST00000580578.1:c.174-136A>C
  variant of: http://identifiers.org/hgnc/6629
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33842
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6149
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

GenotypeQuality
all individuals: 5913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013376570733685e-4
allele num: 9868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 3.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.267e1

DP
type: SiteQuality
SIO_000300: 2.004582e6

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.744316194473592e-5
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.267e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

DP
type: SiteQuality
SIO_000300: 2.004582e6

FS
type: SiteQuality
SIO_000300: 3.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.08e-1

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1416
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6235
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4434
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180916391119509e-4
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.86e0

FS
type: SiteQuality
SIO_000300: 1.3497e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.293e0

DP
type: SiteQuality
SIO_000300: 2.031347e6

QD
type: SiteQuality
SIO_000300: 1.749e1

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19171
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4806
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53666482266888e-5
allele num: 65076
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745810055865922e-4
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002807862013638e-4
allele num: 9972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 3.546e0

QD
type: SiteQuality
SIO_000300: 1.362e1

VQSLOD
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.033747e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 4841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19182
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.743983257760725e-4
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.532942943863629e-5
allele num: 65234
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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FS
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QD
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -4.2e-2

ClippingRankSum
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SIO_000300: 1.6e-2

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.615974886641088e-4
allele num: 11468
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65282
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65282
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.144770800049158e-5
allele num: 16274
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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SIO_000300: -1.45e0

ClippingRankSum
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SIO_000300: 2.68e-1

InbreedingCoeff
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SIO_000300: 3.2e-3

QD
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SIO_000300: 1.373e1

VQSLOD
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SIO_000300: 2.11e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65310
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225490196078431e-4
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
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allele count: 12
allele frequency: 1.415762151958471e-3
allele num: 8476
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.994017946161515e-4
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
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SIO_000300: 7.79e-1

BaseQRankSum
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SIO_000300: 2.76e0

ClippingRankSum
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SIO_000300: -2.89e-1

FS
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SIO_000300: 1.538e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.04571e6

QD
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SIO_000300: 1.292e1

GenotypeDepth
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19218
bin: 9.75e1
variant carriers: 27

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 1.654411764705882e-3
allele num: 16320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65310
num of homozygotes: 0

VQSLOD
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SIO_000300: 2.9e0

MQ
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SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.538e0

ReadPosRankSum
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DP
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SIO_000300: 2.04571e6

MQRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.292e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.176276267090815e-5
allele num: 65386
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.097560975609756e-4
allele num: 6560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.073e1

VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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DP
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SIO_000300: 2.048804e6

ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -2.996e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeDepth
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variant carriers: 19

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.614151272220286e-4
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10040
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.583091447951358e-5
allele num: 65458
num of homozygotes: 0

South Asian
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allele count: 421
allele frequency: 2.565196197903973e-2
allele num: 16412
num of homozygotes: 11

Other
type: Population
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allele frequency: 2.242152466367713e-3
allele num: 892
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

African
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allele frequency: 5.967774020290431e-4
allele num: 10054
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.52699731248473e-5
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num of homozygotes: 0

InbreedingCoeff
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FS
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QD
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MQ
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BaseQRankSum
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MQRankSum
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SIO_000300: -5.9e-2

VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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SIO_000300: 2.95e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.525832341542311e-5
allele num: 65538
num of homozygotes: 0

Latino
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South Asian
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African
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East Asian
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Other
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European (Finnish)
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8484
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African
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South Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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FS
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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Other
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num of homozygotes: 0

European (Non-Finnish)
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 1.3e-3

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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European (Non-Finnish)
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Latino
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African
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FS
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.570801718621446e-5
allele num: 65634
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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Other
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African
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South Asian
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BaseQRankSum
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FS
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QD
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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Other
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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FS
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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South Asian
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Latino
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European (Non-Finnish)
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.738525730180807e-4
allele num: 11504
num of homozygotes: 0

South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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MQ
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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African
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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QD
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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Latino
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MQ
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ClippingRankSum
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DP
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QD
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VQSLOD
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 3.283e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.947e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2486
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variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524390243902439e-5
allele num: 65600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.983339944466482e-4
allele num: 10084
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

DP
type: SiteQuality
SIO_000300: 2.077211e6

BaseQRankSum
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SIO_000300: -2.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 4.5043e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.105e1

QD
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03951367781155e-5
allele num: 65800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.04e-1

QD
type: SiteQuality
SIO_000300: 1.035e1

FS
type: SiteQuality
SIO_000300: 4.615e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

DP
type: SiteQuality
SIO_000300: 2.077185e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 2501
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.279150332755948e-4
allele num: 65814
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.078094e6

FS
type: SiteQuality
SIO_000300: 1.787e0

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
all individuals: 4545
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GenotypeQuality
all individuals: 780
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.181567546278062e-3
allele num: 10156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.033060357901122e-4
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.975023548357692e-4
allele num: 65822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.080357e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3772
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518326197200206e-5
allele num: 65862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.08079e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.363e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.081208e6

BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 2.082287e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
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variant carriers: 29

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 46632
bin: 9.75e1
variant carriers: 43264

GenotypeQuality
all individuals: 1481
bin: 7.75e1
variant carriers: 110

Other
type: Population
allele count: 435
allele frequency: 4.854910714285715e-1
allele num: 896
num of homozygotes: 108

East Asian
type: Population
allele count: 3867
allele frequency: 4.534474671669794e-1
allele num: 8528
num of homozygotes: 890

African
type: Population
allele count: 1686
allele frequency: 1.653914067098293e-1
allele num: 10194
num of homozygotes: 137

European (Finnish)
type: Population
allele count: 3568
allele frequency: 5.415907710989678e-1
allele num: 6588
num of homozygotes: 973

Latino
type: Population
allele count: 3919
allele frequency: 3.399548924358085e-1
allele num: 11528
num of homozygotes: 704

European (Non-Finnish)
type: Population
allele count: 36730
allele frequency: 5.543983577854253e-1
allele num: 66252
num of homozygotes: 10147

South Asian
type: Population
allele count: 10355
allele frequency: 6.277279340446169e-1
allele num: 16496
num of homozygotes: 3290

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 5.362855e6

FS
type: SiteQuality
SIO_000300: 1.105e0

QD
type: SiteQuality
SIO_000300: 1.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.88e-1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12255
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 2.136e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.76e-1

DP
type: SiteQuality
SIO_000300: 2.094726e6

GenotypeQuality
all individuals: 3189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511487303506651e-5
allele num: 66160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 2.095322e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.291e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3744
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.243e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 2.095322e6

FS
type: SiteQuality
SIO_000300: 4.291e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023523009010099e-5
allele num: 66148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.095233e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.282e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
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GenotypeQuality
all individuals: 12239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19309
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variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.018e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 2.095594e6

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12228
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

DP
type: SiteQuality
SIO_000300: 2.096337e6

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.158e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 2.893e0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12228
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.884660651235779e-4
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.893e0

DP
type: SiteQuality
SIO_000300: 2.096337e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.158e1

MQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

GenotypeQuality
all individuals: 12221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.154e0

VQSLOD
type: SiteQuality
SIO_000300: -4.371e-1

BaseQRankSum
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SIO_000300: -9.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
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SIO_000300: 2.032e1

MQRankSum
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SIO_000300: -1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.095834e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.552e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

DP
type: SiteQuality
SIO_000300: 2.0955e6

MQRankSum
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SIO_000300: -9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

DP
type: SiteQuality
SIO_000300: 2.0955e6

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.178e1

FS
type: SiteQuality
SIO_000300: 2.552e0

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

GenotypeQuality
all individuals: 4201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3730
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5355587808418e-5
allele num: 66144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.266e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.678e0

DP
type: SiteQuality
SIO_000300: 2.094448e6

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 398
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.544077552256892e-5
allele num: 66020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

QD
type: SiteQuality
SIO_000300: 1.149e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

FS
type: SiteQuality
SIO_000300: 1.0454e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 2.077544e6

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 68

South Asian
type: Population
allele count: 65
allele frequency: 3.953771289537713e-3
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029843963035904e-5
allele num: 66010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 2.399e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.077056e6

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037943919555245e-5
allele num: 65834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.299e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 3.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

DP
type: SiteQuality
SIO_000300: 2.055381e6

GenotypeQuality
all individuals: 8478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 183
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5002
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.607335303320007e-4
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 2.055381e6

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.065e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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QD
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DP
type: SiteQuality
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InbreedingCoeff
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MQ
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SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65822
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.172607879924953e-4
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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DP
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MQ
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10088
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519387383007172e-5
allele num: 65816
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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SIO_000300: 2.8e-3

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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African
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allele num: 10082
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
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DP
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VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.3e-3

QD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.520820026158104e-5
allele num: 65754
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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Other
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African
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allele num: 10082
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East Asian
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European (Finnish)
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QD
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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Other
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Other
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MQRankSum
type: SiteQuality
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FS
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.18569e5

VQSLOD
type: SiteQuality
SIO_000300: -3.388e-1

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8350
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5932
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6832
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5256
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 2.686727565824826e-4
allele num: 3722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33100
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.288329519450801e-4
allele num: 4370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.83047e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

QD
type: SiteQuality
SIO_000300: 1.101e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

GenotypeQuality
all individuals: 583
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 21745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5256
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5932
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6832
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.208459214501511e-4
allele num: 33100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.83047e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 6301
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5528
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 962
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
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variant carriers: 0

GenotypeQuality
all individuals: 22434
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variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
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variant carriers: 0

GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 315
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variant carriers: 2

GenotypeQuality
all individuals: 836
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5030
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
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variant carriers: 1

GenotypeQuality
all individuals: 10314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 186
bin: 9.75e1
variant carriers: 84

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 2

Latino
type: Population
allele count: 4
allele frequency: 1.042209484106305e-3
allele num: 3838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33664
num of homozygotes: 0

South Asian
type: Population
allele count: 81
allele frequency: 6.864406779661017e-3
allele num: 11800
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

DP
type: SiteQuality
SIO_000300: 7.11634e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.529e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

GenotypeQuality
all individuals: 2860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
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variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
all individuals: 418
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variant carriers: 0

GenotypeQuality
all individuals: 4847
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variant carriers: 0

GenotypeQuality
all individuals: 12311
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variant carriers: 0

GenotypeQuality
all individuals: 22474
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variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5668
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 1

GenotypeQuality
all individuals: 369
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variant carriers: 0

GenotypeQuality
all individuals: 4743
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variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.296001327360213e-5
allele num: 12054
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.52656e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.588e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

GenotypeQuality
all individuals: 415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 2538
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variant carriers: 0

GenotypeQuality
all individuals: 886
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variant carriers: 0

GenotypeQuality
all individuals: 200
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1025
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variant carriers: 0

GenotypeQuality
all individuals: 1599
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variant carriers: 0

GenotypeQuality
all individuals: 723
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variant carriers: 0

GenotypeQuality
all individuals: 763
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variant carriers: 0

GenotypeQuality
all individuals: 4221
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variant carriers: 0

GenotypeQuality
all individuals: 383
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GenotypeQuality
all individuals: 906
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 14174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.730897372876727e-5
allele num: 36618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.96209e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.481e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.68e0

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

GenotypeQuality
all individuals: 18149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 688
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variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.547640884540915e-5
allele num: 39252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.668e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.56857e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.124e0

VQSLOD
type: SiteQuality
SIO_000300: -3.182e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

GenotypeQuality
all individuals: 20420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 116
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 787
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GenotypeQuality
all individuals: 597
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variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
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GenotypeQuality
all individuals: 399
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variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19166
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2034
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.942501942501943e-4
allele num: 5148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12908
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 9.45179584120983e-4
allele num: 5290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.70503e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.555e0

QD
type: SiteQuality
SIO_000300: 8.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

GenotypeQuality
all individuals: 142
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 952
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 122
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 970
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GenotypeQuality
all individuals: 2273
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GenotypeQuality
all individuals: 3303
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GenotypeQuality
all individuals: 15605
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GenotypeQuality
all individuals: 512
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124314908442027e-5
allele num: 47074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14074
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.221e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

QD
type: SiteQuality
SIO_000300: 7.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.835e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.027221e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
all individuals: 3503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.069108214359611e-5
allele num: 48330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.383e0

DP
type: SiteQuality
SIO_000300: 1.056523e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: -1.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.054e0

QD
type: SiteQuality
SIO_000300: 1.223e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.399999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

GenotypeQuality
all individuals: 1698
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12923
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.994336085517131e-5
allele num: 50142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

DP
type: SiteQuality
SIO_000300: 1.099024e6

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.463e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

QD
type: SiteQuality
SIO_000300: 1.57e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 252
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.610824742268041e-4
allele num: 6208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14822
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.397819401733296e-3
allele num: 7154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.115919e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1