19-10657649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657649
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657649
    reference: chr 19
allele count: 6
allele frequency: 7.851758793969849e-5
allele num: 76416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.871C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.146C>T
  hgvsp: ENSP00000468780.1:p.Arg50Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.628C>T
  hgvsp: ENSP00000468290.1:p.Arg210Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-216C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1843C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.628C>T
  hgvsp: ENSP00000311318.3:p.Arg210Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1843C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.526C>T
  hgvsp: ENSP00000467223.1:p.Arg176Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1977C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*219C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1843C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20120
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg210Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-10657650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657650
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657650
    reference: chr 19
allele count: 8
allele frequency: 1.06732129039144e-4
allele num: 74954
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.629G>A
  hgvsp: ENSP00000311318.3:p.Arg210His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.147G>A
  hgvsp: ENSP00000468780.1:p.Arg50His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.629G>A
  hgvsp: ENSP00000468290.1:p.Arg210His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1844G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1844G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*220G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.527G>A
  hgvsp: ENSP00000467223.1:p.Arg176His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1978G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.872G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1844G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-215G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20057
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg210His
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-10657652-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657652
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657652
    reference: chr 19
allele count: 1
allele frequency: 1.349819124237352e-5
allele num: 74084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1846C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*222C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1846C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.529C>G
  hgvsp: ENSP00000467223.1:p.Arg177Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1980C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.631C>G
  hgvsp: ENSP00000468290.1:p.Arg211Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.874C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.149C>G
  hgvsp: ENSP00000468780.1:p.Arg51Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.631C>G
  hgvsp: ENSP00000311318.3:p.Arg211Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-213C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1846C>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg211Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

19-10657652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657652
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657652
    reference: chr 19
allele count: 1
allele frequency: 1.349819124237352e-5
allele num: 74084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.529C>T
  hgvsp: ENSP00000467223.1:p.Arg177Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1846C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-213C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.631C>T
  hgvsp: ENSP00000468290.1:p.Arg211Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1846C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.874C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1846C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.149C>T
  hgvsp: ENSP00000468780.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*222C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.631C>T
  hgvsp: ENSP00000311318.3:p.Arg211Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1980C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19898
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg211Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-10657653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657653
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657653
    reference: chr 19
allele count: 4
allele frequency: 5.446771426237098e-5
allele num: 73438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-212G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*223G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1847G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.632G>A
  hgvsp: ENSP00000468290.1:p.Arg211Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1981G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1847G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1847G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.150G>A
  hgvsp: ENSP00000468780.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.632G>A
  hgvsp: ENSP00000311318.3:p.Arg211Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.530G>A
  hgvsp: ENSP00000467223.1:p.Arg177Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.875G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg211Gln
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS

19-10657654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657654
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657654
    reference: chr 19
allele count: 1
allele frequency: 1.365747063643813e-5
allele num: 73220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.633G>A
  hgvsp: ENST00000309469.4:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1848G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.531G>A
  hgvsp: ENST00000586477.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.876G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.151G>A
  hgvsp: ENST00000587256.1:c.151G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.633G>A
  hgvsp: ENST00000588857.1:c.633G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*224G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1982G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1848G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1848G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-211G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg211Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-10657657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657657
    reference: chr 19
allele count: 1
allele frequency: 1.382361072712193e-5
allele num: 72340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.534C>T
  hgvsp: ENST00000586477.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1985C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1851C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-208C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1851C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.636C>T
  hgvsp: ENST00000309469.4:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*227C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.154C>T
  hgvsp: ENST00000587256.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.636C>T
  hgvsp: ENST00000588857.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.879C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1851C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His212His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-10657658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657658
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657658
    reference: chr 19
allele count: 3
allele frequency: 4.198975449990202e-5
allele num: 71446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.155C>T
  hgvsp: ENSP00000468780.1:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.637C>T
  hgvsp: ENSP00000468290.1:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1852C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.535C>T
  hgvsp: ENSP00000467223.1:p.Arg179Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.637C>T
  hgvsp: ENSP00000311318.3:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.880C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1986C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1852C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-207C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1852C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19689
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18782
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7546
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg213Trp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

19-10657659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657659
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657659
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 70726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.638G>A
  hgvsp: ENSP00000468290.1:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.638G>A
  hgvsp: ENSP00000311318.3:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.881G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1853G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+1987G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*229G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1853G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.156G>A
  hgvsp: ENSP00000468780.1:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.536G>A
  hgvsp: ENSP00000467223.1:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1853G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-206G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19001
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg213Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-10657680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657680
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657680
    reference: chr 19
allele count: 1
allele frequency: 1.821958240717123e-5
allele num: 54886
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.659C>T
  hgvsp: ENSP00000311318.3:p.Ala220Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2008C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.902C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1874C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1874C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-185C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.177C>T
  hgvsp: ENSP00000468780.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*250C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.659C>T
  hgvsp: ENSP00000468290.1:p.Ala220Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.557C>T
  hgvsp: ENSP00000467223.1:p.Ala186Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1874C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

19-10657681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657681
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657681
    reference: chr 19
allele count: 2
allele frequency: 3.6391426179992e-5
allele num: 54958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.903C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.178C>T
  hgvsp: ENST00000587256.1:c.178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2009C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*251C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-184C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1875C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1875C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.660C>T
  hgvsp: ENST00000309469.4:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1875C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.660C>T
  hgvsp: ENST00000588857.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.558C>T
  hgvsp: ENST00000586477.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15673
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22033
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala220Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

19-10657683-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657683
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657683
    reference: chr 19
allele count: 1
allele frequency: 1.796686909339179e-5
allele num: 55658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.662A>T
  hgvsp: ENSP00000468290.1:p.Asp221Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-182A>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1877A>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*253A>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1877A>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.560A>T
  hgvsp: ENSP00000467223.1:p.Asp187Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.662A>T
  hgvsp: ENSP00000311318.3:p.Asp221Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2011A>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1877A>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.180A>T
  hgvsp: ENSP00000468780.1:p.Asp61Val
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.905A>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp221Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

19-10657691-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657691
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657692
    reference: chr 19
allele count: 1
allele frequency: 1.879840589518009e-5
allele num: 53196
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1888dupG
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.191dupG
  hgvsp: ENSP00000468780.1:p.Ala65GlyfsTer21
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.673dupG
  hgvsp: ENSP00000311318.3:p.Ala225GlyfsTer21
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.673dupG
  hgvsp: ENSP00000468290.1:p.Ala225GlyfsTer83
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1886dupG
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.916dupG
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.571dupG
  hgvsp: ENSP00000467223.1:p.Ala191GlyfsTer?
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2022dupG
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1888dupG
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*264dupG
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-171dupG
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala225GlyfsTer21
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-10657691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657691
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657691
    reference: chr 19
allele count: 2
allele frequency: 3.759681179036018e-5
allele num: 53196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.275+1885C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1885C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.568C>T
  hgvsp: ENSP00000467223.1:p.Arg190Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*261C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.188C>T
  hgvsp: ENSP00000468780.1:p.Arg64Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.913C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-174C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1885C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.670C>T
  hgvsp: ENSP00000468290.1:p.Arg224Trp
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2019C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.670C>T
  hgvsp: ENSP00000311318.3:p.Arg224Trp
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22771
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg224Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-10657697-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657697
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657697
    reference: chr 19
allele count: 1
allele frequency: 1.886294186441317e-5
allele num: 53014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1891C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1891C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.574C>G
  hgvsp: ENSP00000467223.1:p.Pro192Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1883C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.194C>G
  hgvsp: ENSP00000468780.1:p.Pro66Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*267C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.676C>G
  hgvsp: ENSP00000311318.3:p.Pro226Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-168C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.919C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.676C>G
  hgvsp: ENSP00000468290.1:p.Pro226Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2025C>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro226Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

19-10657711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657711
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657711
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 51516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2039C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.933C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1869C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*281C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.208C>T
  hgvsp: ENST00000587256.1:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.588C>T
  hgvsp: ENST00000586477.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.690C>T
  hgvsp: ENST00000309469.4:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1905C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.690C>T
  hgvsp: ENST00000588857.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1905C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-154C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His230His
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-10657712-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657712
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657712
    reference: chr 19
allele count: 2
allele frequency: 4.056301464324829e-5
allele num: 49306
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.691C>A
  hgvsp: ENST00000309469.4:c.691C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.589C>A
  hgvsp: ENST00000586477.1:c.589C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*282C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1906C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.209C>A
  hgvsp: ENST00000587256.1:c.209C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-153C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2040C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1868C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.934C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.691C>A
  hgvsp: ENST00000588857.1:c.691C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1906C>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg231Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

19-10657713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657713
    reference: chr 19
allele count: 2
allele frequency: 3.953350464518679e-5
allele num: 50590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.692G>A
  hgvsp: ENSP00000311318.3:p.Arg231Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-152G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.692G>A
  hgvsp: ENSP00000468290.1:p.Arg231Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.210G>A
  hgvsp: ENSP00000468780.1:p.Arg71Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1907G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1907G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*283G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2041G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.935G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.590G>A
  hgvsp: ENSP00000467223.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1867G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg231Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-10657719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657719
    reference: chr 19
allele count: 1
allele frequency: 2.45893577259762e-5
allele num: 40668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2047T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*289T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.596T>C
  hgvsp: ENSP00000467223.1:p.Val199Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.698T>C
  hgvsp: ENSP00000311318.3:p.Val233Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1913T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.941T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.698T>C
  hgvsp: ENSP00000468290.1:p.Val233Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1861T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.216T>C
  hgvsp: ENSP00000468780.1:p.Val73Ala
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-146T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1913T>C
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val233Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

19-10657719-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657719
    reference: chr 19
allele count: 257
allele frequency: 6.319464935575883e-3
allele num: 40668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.698T>G
  hgvsp: ENSP00000468290.1:p.Val233Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2047T>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.216T>G
  hgvsp: ENSP00000468780.1:p.Val73Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.698T>G
  hgvsp: ENSP00000311318.3:p.Val233Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.941T>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-146T>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1861T>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.596T>G
  hgvsp: ENSP00000467223.1:p.Val199Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*289T>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1913T>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1913T>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13649
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 1.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Val233Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-10657722-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657722
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657722
    reference: chr 19
allele count: 67
allele frequency: 1.327310907722176e-3
allele num: 50478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*292A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-143A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2050A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.599A>G
  hgvsp: ENSP00000467223.1:p.Glu200Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.701A>G
  hgvsp: ENSP00000468290.1:p.Glu234Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.219A>G
  hgvsp: ENSP00000468780.1:p.Glu74Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.701A>G
  hgvsp: ENSP00000311318.3:p.Glu234Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1858A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1916A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.944A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1916A>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12925
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23530
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu234Gly
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-10657727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657727
    reference: chr 19
allele count: 1
allele frequency: 1.917251428352314e-5
allele num: 52158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2055G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1853G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-138G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.706G>A
  hgvsp: ENSP00000468290.1:p.Gly236Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.706G>A
  hgvsp: ENSP00000311318.3:p.Gly236Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.224G>A
  hgvsp: ENSP00000468780.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1921G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.604G>A
  hgvsp: ENSP00000467223.1:p.Gly202Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*297G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1921G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.949G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly236Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

19-10657731-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657731
    reference: chr 19
allele count: 1
allele frequency: 1.886792452830189e-5
allele num: 53000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.710A>G
  hgvsp: ENSP00000311318.3:p.Gln237Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1925A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*301A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.953A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2059A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-134A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.608A>G
  hgvsp: ENSP00000467223.1:p.Gln203Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1849A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.710A>G
  hgvsp: ENSP00000468290.1:p.Gln237Arg
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1925A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.228A>G
  hgvsp: ENSP00000468780.1:p.Gln77Arg
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln237Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-10657733-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657733
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657733
    reference: chr 19
allele count: 1
allele frequency: 1.873992728908212e-5
allele num: 53362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.712A>G
  hgvsp: ENSP00000468290.1:p.Ser238Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.230A>G
  hgvsp: ENSP00000468780.1:p.Ser78Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-132A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.712A>G
  hgvsp: ENSP00000311318.3:p.Ser238Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467223
  ensembl transcript: ENST00000586477
  gene symbol: ATG4D
  hgvsc: ENST00000586477.1:c.610A>G
  hgvsp: ENSP00000467223.1:p.Ser204Gly
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1927A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.955A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2061A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*303A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1847A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1927A>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser238Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

19-10657759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657759
    reference: chr 19
allele count: 1
allele frequency: 1.634948662611994e-5
allele num: 61164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1953G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1821G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.726+12G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.981G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.738G>A
  hgvsp: ENSP00000311318.3:p.Trp246Ter
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2087G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.255+1G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-106G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*329G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1953G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
hgvs: c.255+1G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-10657770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657770
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657770
    reference: chr 19
allele count: 9
allele frequency: 1.366037277639487e-4
allele num: 65884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1964C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.749C>T
  hgvsp: ENSP00000311318.3:p.Ser250Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.726+23C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-95C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.992C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1964C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1810C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.255+12C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2098C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15102
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser250Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

19-10657771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657771
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657771
    reference: chr 19
allele count: 2
allele frequency: 2.986144290492116e-5
allele num: 66976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.993G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.750G>A
  hgvsp: ENST00000309469.4:c.750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*341G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1965G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.726+24G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-94G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.255+13G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2099G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1809G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1965G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23848
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15823
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Ser250Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

19-10657777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657777
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657777
    reference: chr 19
allele count: 1
allele frequency: 1.414147127867183e-5
allele num: 70714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.999G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.726+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*347G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2105G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.756G>A
  hgvsp: ENST00000309469.4:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+1971G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+1971G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-88G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1803G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.255+19G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val252Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

19-10657809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657809
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657809
    reference: chr 19
allele count: 3
allele frequency: 3.351805505899178e-5
allele num: 89504
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+18G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1031G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2003G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+18G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-56G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-56G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1771G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2137G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.255+51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2003G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25293
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-10657814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657814
    reference: chr 19
allele count: 2
allele frequency: 2.148181564305815e-5
allele num: 93102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+23C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1036C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1766C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+23C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2142C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-51C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2008C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-51C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-51C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2008C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-10657815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657815
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657815
    reference: chr 19
allele count: 1
allele frequency: 1.065507394621319e-5
allele num: 93852
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+24G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2143G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2009G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+24G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2009G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1765G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1037G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-50G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-50G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-50G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-10657816-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657816
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657816
    reference: chr 19
allele count: 2
allele frequency: 2.107570392851121e-5
allele num: 94896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2144G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1038G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-49G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2010G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+25G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2010G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1764G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-49G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-49G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+25G>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27688
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14158
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

19-10657822-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657822
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657822
    reference: chr 19
allele count: 1
allele frequency: 1.009122467102608e-5
allele num: 99096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-43G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2150G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+31G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1758G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+31G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-43G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1044G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-43G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2016G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2016G>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9236
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

19-10657823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657823
    reference: chr 19
allele count: 1
allele frequency: 1.003351192984568e-5
allele num: 99666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2017C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-42C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1045C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2017C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-42C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+32C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1757C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2151C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+32C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-42C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

19-10657825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657825
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657825
    reference: chr 19
allele count: 3
allele frequency: 2.971120706730579e-5
allele num: 100972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2019G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2019G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-40G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*361+34G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1755G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1047G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2153G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.770+34G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-40G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-40G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-10657830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657830
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657830
    reference: chr 19
allele count: 1
allele frequency: 9.66239588768431e-6
allele num: 103494
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-35C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2158C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1052C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-35C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2024C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-35C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-35C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1750C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-35C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2024C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35853
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

19-10657831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657831
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657831
    reference: chr 19
allele count: 7
allele frequency: 6.705494673921373e-5
allele num: 104392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-34C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1749C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1053C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-34C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-34C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-34C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-34C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2159C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2025C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2025C>G
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 37001
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-10657832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657832
    reference: chr 19
allele count: 2
allele frequency: 1.906214258482654e-5
allele num: 104920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2026C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-33C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1748C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1054C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-33C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2026C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-33C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-33C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-33C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2160C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32732
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-10657833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657833
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657833
    reference: chr 19
allele count: 1
allele frequency: 9.442870632672332e-6
allele num: 105900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1747G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2027G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2161G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-32G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-32G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-32G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-32G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1055G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2027G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-32G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33148
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38064
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-10657834-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657834
    reference: chr 19
allele count: 1
allele frequency: 9.36592675845275e-6
allele num: 106770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2028C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-31C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-31C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-31C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-31C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1056C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2162C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1746C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2028C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-31C>A
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8085
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

19-10657834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657834
    reference: chr 19
allele count: 1
allele frequency: 9.36592675845275e-6
allele num: 106770
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-31C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2162C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2028C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-31C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-31C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1056C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1746C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2028C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-31C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-31C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-10657860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657860
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657860
    reference: chr 19
allele count: 6
allele frequency: 5.157031612603785e-5
allele num: 116346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.256-5C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.494-5C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1082C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2054C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.727-5C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.771-5C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2054C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*362-5C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1720C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2188C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
hgvs: c.771-5C>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-10657871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657871
    reference: chr 19
allele count: 835
allele frequency: 7.087803884286296e-3
allele num: 117808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2065C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1709C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.777C>T
  hgvsp: ENST00000309469.4:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.733C>T
  hgvsp: ENSP00000468290.1:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2199C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.262C>T
  hgvsp: ENST00000587256.1:c.262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.500C>T
  hgvsp: ENSP00000467407.1:p.Pro167Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2065C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1093C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*368C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 38016
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg245Cys
num of homozygotes: 5
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-10657872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657872
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657872
    reference: chr 19
allele count: 1
allele frequency: 8.478456242687331e-6
allele num: 117946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.501G>A
  hgvsp: ENST00000588667.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1708G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.263G>A
  hgvsp: ENSP00000468780.1:p.Val89Met
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.734G>A
  hgvsp: ENSP00000468290.1:p.Arg245His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2066G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2066G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*369G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.778G>A
  hgvsp: ENSP00000311318.3:p.Val260Met
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2200G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1094G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val260Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-10657886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657886
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657886
    reference: chr 19
allele count: 2
allele frequency: 1.686681959249764e-5
allele num: 118576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2080C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.748C>T
  hgvsp: ENSP00000468290.1:p.Arg250Ter
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1694C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2080C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.277C>T
  hgvsp: ENST00000587256.1:c.277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.792C>T
  hgvsp: ENST00000309469.4:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*383C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2214C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.515C>T
  hgvsp: ENSP00000467407.1:p.Pro172Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1108C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg250Ter
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-10657887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657887
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657887
    reference: chr 19
allele count: 6
allele frequency: 5.0585101001585e-5
allele num: 118612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2081G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.278G>A
  hgvsp: ENSP00000468780.1:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2215G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1693G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*384G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.749G>A
  hgvsp: ENSP00000468290.1:p.Arg250Gln
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.516G>A
  hgvsp: ENST00000588667.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.793G>A
  hgvsp: ENSP00000311318.3:p.Asp265Asn
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2081G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1109G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38119
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp265Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-10657889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657889
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657889
    reference: chr 19
allele count: 1
allele frequency: 8.426161546369167e-6
allele num: 118678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.751C>T
  hgvsp: ENSP00000468290.1:p.Arg251Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.280C>T
  hgvsp: ENST00000587256.1:c.280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2083C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2217C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.518C>T
  hgvsp: ENSP00000467407.1:p.Thr173Met
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2083C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1111C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.795C>T
  hgvsp: ENST00000309469.4:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1691C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*386C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg251Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

19-10657890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657890
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657890
    reference: chr 19
allele count: 7
allele frequency: 5.896325746727539e-5
allele num: 118718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2218G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2084G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1690G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.281G>A
  hgvsp: ENSP00000468780.1:p.Val95Ile
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.796G>A
  hgvsp: ENSP00000311318.3:p.Val266Ile
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2084G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.752G>A
  hgvsp: ENSP00000468290.1:p.Arg251His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*387G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1112G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.519G>A
  hgvsp: ENST00000588667.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38122
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15547
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val266Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-10657894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657894
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657894
    reference: chr 19
allele count: 3
allele frequency: 2.524232633279483e-5
allele num: 118848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.285C>T
  hgvsp: ENSP00000468780.1:p.Thr96Ile
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.523C>T
  hgvsp: ENSP00000467407.1:p.Pro175Ser
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.800C>T
  hgvsp: ENSP00000311318.3:p.Thr267Ile
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2088C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.756C>T
  hgvsp: ENST00000588857.1:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2222C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*391C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2088C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1686C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1116C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr267Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-10657896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657896
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657896
    reference: chr 19
allele count: 4
allele frequency: 3.36439794098846e-5
allele num: 118892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2224C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.287C>T
  hgvsp: ENSP00000468780.1:p.Arg97Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2090C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.802C>T
  hgvsp: ENSP00000311318.3:p.Arg268Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.758C>T
  hgvsp: ENSP00000468290.1:p.Pro253Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*393C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1118C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.525C>T
  hgvsp: ENST00000588667.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1684C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2090C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg268Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-10657897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657897
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657897
    reference: chr 19
allele count: 2
allele frequency: 1.682085786375105e-5
allele num: 118900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1683G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.759G>A
  hgvsp: ENST00000588857.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2091G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.803G>A
  hgvsp: ENSP00000311318.3:p.Arg268His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2091G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.288G>A
  hgvsp: ENSP00000468780.1:p.Arg97His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1119G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*394G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.526G>A
  hgvsp: ENSP00000467407.1:p.Ala176Thr
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2225G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15778
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Arg268His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

19-10657897-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657897
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657897
    reference: chr 19
allele count: 1
allele frequency: 8.410428931875526e-6
allele num: 118900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*394G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.288G>T
  hgvsp: ENSP00000468780.1:p.Arg97Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.803G>T
  hgvsp: ENSP00000311318.3:p.Arg268Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.526G>T
  hgvsp: ENSP00000467407.1:p.Ala176Ser
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1683G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2091G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.759G>T
  hgvsp: ENST00000588857.1:c.759G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2225G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2091G>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1119G>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15778
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg268Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

19-10657910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657910
    reference: chr 19
allele count: 2
allele frequency: 1.681746325384279e-5
allele num: 118924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.301C>T
  hgvsp: ENST00000587256.1:c.301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1670C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1132C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.772C>T
  hgvsp: ENSP00000468290.1:p.Arg258Cys
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2104C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.539C>T
  hgvsp: ENSP00000467407.1:p.Thr180Met
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.816C>T
  hgvsp: ENST00000309469.4:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2104C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2238C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*407C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg258Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

19-10657911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657911
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657911
    reference: chr 19
allele count: 12
allele frequency: 1.00928542591845e-4
allele num: 118896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1133G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.302G>A
  hgvsp: ENSP00000468780.1:p.Val102Ile
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2239G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2105G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1669G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.817G>A
  hgvsp: ENSP00000311318.3:p.Val273Ile
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*408G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.773G>A
  hgvsp: ENSP00000468290.1:p.Arg258His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2105G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.540G>A
  hgvsp: ENST00000588667.1:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val273Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

19-10657929-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657929
    reference: chr 19
allele count: 2
allele frequency: 1.691732503256585e-5
allele num: 118222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558G>A
  hgvsp: ENST00000588667.1:c.558G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2123G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2257G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835G>A
  hgvsp: ENSP00000311318.3:p.Val279Met
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791G>A
  hgvsp: ENSP00000468290.1:p.Ser264Asn
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320G>A
  hgvsp: ENSP00000468780.1:p.Val108Met
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2123G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1651G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val279Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

19-10657929-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657929
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657929
    reference: chr 19
allele count: 1
allele frequency: 8.458662516282926e-6
allele num: 118222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2123G>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558G>C
  hgvsp: ENSP00000467407.1:p.Gln186His
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426G>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151G>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835G>C
  hgvsp: ENSP00000311318.3:p.Val279Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320G>C
  hgvsp: ENSP00000468780.1:p.Val108Leu
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791G>C
  hgvsp: ENSP00000468290.1:p.Ser264Thr
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1651G>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2257G>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2123G>C
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36024
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val279Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

19-10657940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657940
    reference: chr 19
allele count: 1
allele frequency: 8.517307168165713e-6
allele num: 117408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+11G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2134G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+11G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2134G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+11G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+11G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+11G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2268G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1640G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+11G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-10657945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657945
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657945
    reference: chr 19
allele count: 1
allele frequency: 8.547300762419228e-6
allele num: 116996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+16C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+16C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2139C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+16C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+16C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1635C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+16C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+16C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2273C>T
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2139C>T
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32396
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

19-10657947-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657947
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657947
    reference: chr 19
allele count: 5
allele frequency: 4.276940447881204e-5
allele num: 116906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1633A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+18A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2141A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+18A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+18A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2275A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2141A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+18A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+18A>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+18A>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

19-10657957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657957
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657957
    reference: chr 19
allele count: 1
allele frequency: 8.613857974709713e-6
allele num: 116092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1623G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+28G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2285G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+28G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+28G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2151G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+28G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2151G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+28G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+28G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-10657959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657959
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657959
    reference: chr 19
allele count: 1
allele frequency: 8.640503222907702e-6
allele num: 115734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2153G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2287G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1621G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+30G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2153G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/19-10657961-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657961
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657961
    reference: chr 19
allele count: 2
allele frequency: 1.728757887457861e-5
allele num: 115690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+32C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+32C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2155C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+32C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+32C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+32C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2289C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+32C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1619C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2155C>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

19-10657967-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657967
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657967
    reference: chr 19
allele count: 1
allele frequency: 8.724785370279891e-6
allele num: 114616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+38C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2161C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+38C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2161C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1613C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+38C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+38C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+38C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2295C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+38C>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-10657968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657968
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657968
    reference: chr 19
allele count: 223
allele frequency: 1.945355572614977e-3
allele num: 114632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+39T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+39T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+39T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+39T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+39T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2162T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2296T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2162T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+39T>C
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1612T>C
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13470
  bin: 1.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19922
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-10657973-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657973
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657973
    reference: chr 19
allele count: 1
allele frequency: 8.791827117511561e-6
allele num: 113742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2167C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+44C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+44C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1607C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+44C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+44C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+44C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2301C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2167C>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+44C>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11023
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3971
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS

19-10657977-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10657977
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10657977
    reference: chr 19
allele count: 1
allele frequency: 8.88572951839346e-6
allele num: 112540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-34+2171C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.791+48C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.320+48C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.558+48C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*426+48C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1151+48C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.835+48C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-1603C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.359+2305C>G
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.121+2171C>G
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6837
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-10659529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10659529
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10659529
    reference: chr 19
allele count: 1
allele frequency: 8.340979230961715e-6
allele num: 119890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.559-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.321-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.122-3044G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1152-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*427-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.836-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.792-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-51G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.360-3192G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-33-3044G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-10659532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10659532
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10659532
    reference: chr 19
allele count: 1
allele frequency: 8.337780149413021e-6
allele num: 119936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000466439
  ensembl transcript: ENST00000589753
  gene symbol: ATG4D
  hgvsc: ENST00000589753.1:c.122-3041G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.836-48G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467906
  ensembl transcript: ENST00000586417
  gene symbol: ATG4D
  hgvsc: ENST00000586417.1:c.*427-48G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.360-3189G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1152-48G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-33-3041G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-48G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.559-48G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468780
  ensembl transcript: ENST00000587256
  gene symbol: ATG4D
  hgvsc: ENST00000587256.1:c.321-48G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000468290
  ensembl transcript: ENST00000588857
  gene symbol: ATG4D
  hgvsc: ENST00000588857.1:c.792-48G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

19-10659541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10659541
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 10659541
    reference: chr 19
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465716
  ensembl transcript: ENST00000585752
  gene symbol: ATG4D
  hgvsc: ENST00000585752.1:c.360-3180G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000465089
  ensembl transcript: ENST00000586863
  gene symbol: ATG4D
  hgvsc: ENST00000586863.1:c.276-39G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000441375
  ensembl transcript: ENST00000540862
  gene symbol: ATG4D
  hgvsc: ENST00000540862.1:c.-33-3032G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000311318
  ensembl transcript: ENST00000309469
  gene symbol: ATG4D
  hgvsc: ENST00000309469.4:c.836-39G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl protein: ENSP00000467407
  ensembl transcript: ENST00000588667
  gene symbol: ATG4D
  hgvsc: ENST00000588667.1:c.559-39G>A
  variant of: http://identifiers.org/hgnc/20789
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130734
  ensembl transcript: ENST00000590096
  gene symbol: ATG4D
  hgvsc: ENST00000590096.1:n.1152-39G>A
  variant of: http://identifiers.org/hgnc/20789
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4586
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.25022502250225e-4
allele num: 13332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.777830864787386e-5
allele num: 41860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.592356687898089e-4
allele num: 6280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

DP
type: SiteQuality
SIO_000300: 8.25134e5

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.81e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 790
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.860661049902787e-4
allele num: 6172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.791325447376403e-4
allele num: 13188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 4.714e0

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

DP
type: SiteQuality
SIO_000300: 8.12927e5

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28744
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4954
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4007
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.878287002253945e-4
allele num: 5324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.558e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.05723e5

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

GenotypeDepth
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4954
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28744
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4007
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.878287002253945e-4
allele num: 5324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 8.05723e5

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 515
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5082
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1492
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5206
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.3003300330033e-4
allele num: 6060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.962779156327543e-5
allele num: 40300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 8.00353e5

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

QD
type: SiteQuality
SIO_000300: 1.038e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.804e0

GenotypeDepth
all individuals: 906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.488057324840764e-5
allele num: 40192
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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MQRankSum
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SIO_000300: 1.35e0

MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.5166096235152e-5
allele num: 39736
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 39244
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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allele frequency: 1.548467017652524e-4
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MQRankSum
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SIO_000300: 1.04e0

ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 8.348000000000001e0

MQ
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SIO_000300: 6.0e1

QD
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SIO_000300: 1.151e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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MQRankSum
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SIO_000300: -6.7e-2

BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 2398
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.30011220381493e-5
allele num: 30302
num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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SIO_000300: -3.2e-1

QD
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 3.296848213108268e-5
allele num: 30332
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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South Asian
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allele num: 11396
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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QD
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FS
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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South Asian
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Latino
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FS
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MQ
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VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.120441051738762e-4
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Other
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.67151e5

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

MQ
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SIO_000300: 6.0e1

QD
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SIO_000300: 1.103e1

FS
type: SiteQuality
SIO_000300: 2.546e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeDepth
all individuals: 2479
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variant carriers: 0

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1021
bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.791736460078169e-4
allele num: 3582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.3921302578019e-5
allele num: 29480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

QD
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ReadPosRankSum
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DP
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

FS
type: SiteQuality
SIO_000300: 2.546e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.03179190751445e-5
allele num: 11072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.75e0

VQSLOD
type: SiteQuality
SIO_000300: -2.248e0

MQRankSum
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SIO_000300: -6.830000000000001e-1

BaseQRankSum
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SIO_000300: 7.88e-1

ReadPosRankSum
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SIO_000300: -6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.88e-1

FS
type: SiteQuality
SIO_000300: 1.822e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

DP
type: SiteQuality
SIO_000300: 6.6873e5

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3560
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.656e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 6.68906e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.022e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 299
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.645909289776871e-5
allele num: 27428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.235315847801995e-5
allele num: 10828
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
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SIO_000300: 1.13e0

BaseQRankSum
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SIO_000300: -1.495e0

ClippingRankSum
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SIO_000300: 6.96e-1

ReadPosRankSum
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.7435e5

FS
type: SiteQuality
SIO_000300: 1.362e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.889e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.094714437743881e-5
allele num: 28190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

DP
type: SiteQuality
SIO_000300: 6.76596e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 1.80994e2

InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeDepth
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 193
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variant carriers: 17

GenotypeQuality
all individuals: 366
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variant carriers: 10

East Asian
type: Population
allele count: 34
allele frequency: 1.386623164763458e-2
allele num: 2452
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 149
allele frequency: 6.588838772441851e-3
allele num: 22614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 8.450704225352112e-3
allele num: 710
num of homozygotes: 0

Latino
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allele count: 7
allele frequency: 5.892255892255892e-3
allele num: 1188
num of homozygotes: 0

South Asian
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allele count: 13
allele frequency: 1.26953125e-3
allele num: 10240
num of homozygotes: 0

African
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allele count: 46
allele frequency: 1.449275362318841e-2
allele num: 3174
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.80994e2

DP
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SIO_000300: 6.82915e5

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeDepth
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
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GenotypeQuality
all individuals: 2021
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3859
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 142
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 9876
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GenotypeQuality
all individuals: 3251
bin: 1.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 9.75e1
variant carriers: 66

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.906976744186046e-3
allele num: 344
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 3.911074516261836e-3
allele num: 4858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.549389567147614e-4
allele num: 3604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 1.590893021282613e-3
allele num: 28286
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.764e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.85e0

DP
type: SiteQuality
SIO_000300: 6.68649e5

FS
type: SiteQuality
SIO_000300: 8.5443e1

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

MQ
type: SiteQuality
SIO_000300: 5.812e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e0

QD
type: SiteQuality
SIO_000300: 7.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
all individuals: 802
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GenotypeQuality
all individuals: 7640
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.927525057825752e-4
allele num: 5188
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

QD
type: SiteQuality
SIO_000300: 1.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 6.78497e5

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 144
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9053
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GenotypeQuality
all individuals: 8240
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variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 380
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.351206434316354e-5
allele num: 29840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.416e0

FS
type: SiteQuality
SIO_000300: 9.249000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.827e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.8e0

DP
type: SiteQuality
SIO_000300: 6.87993e5

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 513
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 469
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GenotypeQuality
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GenotypeQuality
all individuals: 1266
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 292
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GenotypeQuality
all individuals: 3482
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.218289085545723e-5
allele num: 10848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 1.674e0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.768e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 6.92653e5

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 556
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.86053517632465e-5
allele num: 11286
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.93e0

DP
type: SiteQuality
SIO_000300: 8.02609e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.168e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 4.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
all individuals: 1932
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.852047835749815e-4
allele num: 37796
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

DP
type: SiteQuality
SIO_000300: 8.57507e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

FS
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.203e1

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 16441
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.194265530853937e-5
allele num: 38504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4794
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 8.70596e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2632
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.477104874446086e-4
allele num: 6770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

DP
type: SiteQuality
SIO_000300: 9.09708e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.614e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.656e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.704e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51340
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.278250303766707e-4
allele num: 13168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

DP
type: SiteQuality
SIO_000300: 1.094933e6

FS
type: SiteQuality
SIO_000300: 4.058e0

BaseQRankSum
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SIO_000300: -2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
all individuals: 631
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.492537313432836e-3
allele num: 670
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.476076555023923e-5
allele num: 13376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 7.81e0

VQSLOD
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 3.281e0

MQRankSum
type: SiteQuality
SIO_000300: 9.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

DP
type: SiteQuality
SIO_000300: 1.135609e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 990
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GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.502855425308085e-4
allele num: 6654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.879e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 1.145003e6

GenotypeQuality
all individuals: 935
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30057
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 695
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GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.695218387406695e-5
allele num: 54124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

QD
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

DP
type: SiteQuality
SIO_000300: 1.152669e6

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -3.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.778093883357041e-5
allele num: 56240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.159000000000001e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.195837e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.81e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.15233924867481e-4
allele num: 8678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.758e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

FS
type: SiteQuality
SIO_000300: 1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

QD
type: SiteQuality
SIO_000300: 1.296e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.425439598081754e-4
allele num: 8758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57166
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

FS
type: SiteQuality
SIO_000300: 6.679e0

QD
type: SiteQuality
SIO_000300: 2.378e1

ClippingRankSum
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SIO_000300: 3.7e-2

VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.216492e6

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.75e1
variant carriers: 1

Latino
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allele count: 1
allele frequency: 1.134301270417423e-4
allele num: 8816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -1.957e0

QD
type: SiteQuality
SIO_000300: 1.679e1

DP
type: SiteQuality
SIO_000300: 1.244249e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.806e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.706e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.139e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.188616450451674e-4
allele num: 58892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.253454e6

InbreedingCoeff
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SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.91e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.384896591409132e-5
allele num: 59086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 2.883e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 1.261992e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4177
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GenotypeQuality
all individuals: 1061
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678077594307961e-5
allele num: 59592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.275812e6

GenotypeQuality
all individuals: 989
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.06473594548552e-4
allele num: 9392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 4.048e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.282004e6

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

GenotypeQuality
all individuals: 994
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.06473594548552e-4
allele num: 9392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14550
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 4.048e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

QD
type: SiteQuality
SIO_000300: 1.141e1

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 1.282004e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.817279552105866e-4
allele num: 15718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

DP
type: SiteQuality
SIO_000300: 1.394299e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 820

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 287
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GenotypeQuality
all individuals: 47126
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 74
allele frequency: 4.625e-3
allele num: 16000
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 660
allele frequency: 1.016103704159867e-2
allele num: 64954
num of homozygotes: 3

African
type: Population
allele count: 22
allele frequency: 2.189054726368159e-3
allele num: 10050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.245028864656831e-3
allele num: 6236
num of homozygotes: 0

Latino
type: Population
allele count: 55
allele frequency: 4.896723646723646e-3
allele num: 11232
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.359603586597452e-4
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 9.302325581395349e-3
allele num: 860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 1.431956e6

GenotypeQuality
all individuals: 2111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.419362e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

FS
type: SiteQuality
SIO_000300: 4.819e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 5.79e0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064382680109092e-5
allele num: 65266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.428004e6

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 2.408e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.352e0

QD
type: SiteQuality
SIO_000300: 1.042e1

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
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variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 47972
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
all individuals: 233
bin: 3.75e1
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GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.476780185758514e-4
allele num: 16150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.063725490196078e-5
allele num: 65280
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.428889e6

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.118e1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 344
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variant carriers: 0

GenotypeQuality
all individuals: 321
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variant carriers: 0

GenotypeQuality
all individuals: 1767
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 5290
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variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 1.429483e6

VQSLOD
type: SiteQuality
SIO_000300: -6.435999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.105e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.419e0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 5293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 1741
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variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.186954524575104e-5
allele num: 65310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.863878477017163e-5
allele num: 10138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.22e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 3.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

DP
type: SiteQuality
SIO_000300: 1.430285e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
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GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 441
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 182
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GenotypeQuality
all individuals: 1106
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 566
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 48347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 5296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.635277582572031e-4
allele num: 11384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.431494e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

QD
type: SiteQuality
SIO_000300: 1.003e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 279
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GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 5284
bin: 6.75e1
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GenotypeQuality
all individuals: 48414
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GenotypeQuality
all individuals: 1096
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variant carriers: 0

GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.232437761893024e-4
allele num: 16228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.778089887640449e-5
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529940944279551e-5
allele num: 65362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.07e-1

FS
type: SiteQuality
SIO_000300: 5.02e0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

DP
type: SiteQuality
SIO_000300: 1.433006e6

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 210
bin: 5.75e1
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GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 131
bin: 8.75e1
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GenotypeQuality
all individuals: 1337
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GenotypeQuality
all individuals: 101
bin: 4.25e1
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GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65358
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.854158454867954e-5
allele num: 10148
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.778089887640449e-5
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num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

MQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 1.195e0

VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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SIO_000300: 1.432997e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.53003457878148e-5
allele num: 65358
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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QD
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.529894131326112e-5
allele num: 65364
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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FS
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ClippingRankSum
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MQRankSum
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DP
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.410437235543018e-3
allele num: 8508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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SIO_000300: 1.431243e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -6.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.076923076923077e-5
allele num: 65000
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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MQRankSum
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SIO_000300: 1.09e0

InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65000
num of homozygotes: 0

Latino
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African
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allele num: 10016
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 64628
num of homozygotes: 0

South Asian
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Latino
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East Asian
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European (Finnish)
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African
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Other
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MQRankSum
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MQ
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BaseQRankSum
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QD
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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Latino
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.968011458582001e-4
allele num: 8378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 1.348765e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.438e1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 5.292e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 2258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5625e-5
allele num: 64000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.633e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.322e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.283181e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.846e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4115
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.606683804627249e-4
allele num: 6224
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

FS
type: SiteQuality
SIO_000300: 1.2279e1

DP
type: SiteQuality
SIO_000300: 1.257312e6

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 3.05e0

VQSLOD
type: SiteQuality
SIO_000300: -1.808e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.135680913110282e-5
allele num: 63782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

DP
type: SiteQuality
SIO_000300: 1.248978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.755e1

QD
type: SiteQuality
SIO_000300: 1.189e1

VQSLOD
type: SiteQuality
SIO_000300: -8.809e-1

GenotypeQuality
all individuals: 887
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7942
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 5468
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 908
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variant carriers: 0

GenotypeQuality
all individuals: 518
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GenotypeQuality
all individuals: 849
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GenotypeQuality
all individuals: 2090
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 2088
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variant carriers: 0

GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.378364587319811e-5
allele num: 15678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.346e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 2.26e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.075e0

DP
type: SiteQuality
SIO_000300: 1.203e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

GenotypeQuality
all individuals: 23543
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5445
bin: 3.75e1
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GenotypeQuality
all individuals: 176
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GenotypeQuality
all individuals: 2055
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GenotypeQuality
all individuals: 768
bin: 9.75e1
variant carriers: 212

South Asian
type: Population
allele count: 74
allele frequency: 4.715177774945839e-3
allele num: 15694
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21654501216545e-4
allele num: 8220
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.295576531556543e-3
allele num: 10806
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.622323166774821e-4
allele num: 6164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 130
allele frequency: 2.055856026821014e-3
allele num: 63234
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.588516746411483e-3
allele num: 836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.202632e6

QD
type: SiteQuality
SIO_000300: 1.092e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 835
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 561
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592153865749586e-5
allele num: 62808
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.275e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 1.183156e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.813e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 5.483e0

GenotypeQuality
all individuals: 828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7146
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 898
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GenotypeQuality
all individuals: 562
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.656177542232527e-4
allele num: 6038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10494
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.023e1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.75e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.177924e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 803
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16949
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.20343e6

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.032e0

FS
type: SiteQuality
SIO_000300: 3.399e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.989e0

QD
type: SiteQuality
SIO_000300: 1.141e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
all individuals: 6999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.412722842118764e-5
allele num: 15594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.307e0

QD
type: SiteQuality
SIO_000300: 7.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.593e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.204121e6

MQRankSum
type: SiteQuality
SIO_000300: -1.48e0