X-13767698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013767698
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013767698
    reference: chr 0
allele count: 1
allele frequency: 1.370163323468157e-5
allele num: 72984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.515+46A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1246+46A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.935+46A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.935+46A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+46A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-13769338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769338
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769338
    reference: chr 0
allele count: 5
allele frequency: 6.610259122157589e-5
allele num: 75640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.516-30A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1247-30A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.936-30A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1686A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.936-30A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-13769346-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769346
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769346
    reference: chr 0
allele count: 1
allele frequency: 1.306438127090301e-5
allele num: 76544
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1247-22T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.936-22T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.936-22T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1694T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.516-22T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

X-13769350-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769350
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769350
    reference: chr 0
allele count: 1
allele frequency: 1.297050507146748e-5
allele num: 77098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.936-18T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1698T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.516-18T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1247-18T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.936-18T>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-13769366-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769366
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769366
    reference: chr 0
allele count: 11
allele frequency: 1.350123965927781e-4
allele num: 81474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1714A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.936-2A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.516-2A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.936-2A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1247-2A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11985
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
hgvs: c.936-2A>G
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-13769388-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769388
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769388
    reference: chr 0
allele count: 2
allele frequency: 2.365072607729057e-5
allele num: 84564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.956A>C
  hgvsp: ENSP00000381432.3:p.Glu319Ala
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.956A>C
  hgvsp: ENSP00000344314.6:p.Glu319Ala
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1736A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.536A>C
  hgvsp: ENSP00000369941.1:p.Glu179Ala
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1267A>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34788
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4291
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu319Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

X-13769395-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769395
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769394
    reference: chr 0
allele count: 1
allele frequency: 1.177107611177814e-5
allele num: 84954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.547delA
  hgvsp: ENSP00000369941.1:p.Ser183AlafsTer2
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.967delA
  hgvsp: ENSP00000381432.3:p.Ser323AlafsTer2
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1278delA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.967delA
  hgvsp: ENSP00000344314.6:p.Ser323AlafsTer2
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1747delA
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 130
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
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genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 574
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 286
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 394
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44764
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser323AlafsTer2
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: TA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-13769396-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769396
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769396
    reference: chr 0
allele count: 1
allele frequency: 1.176207671226432e-5
allele num: 85019
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1744A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.964A>G
  hgvsp: ENSP00000344314.6:p.Lys322Glu
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.544A>G
  hgvsp: ENSP00000369941.1:p.Lys182Glu
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1275A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.964A>G
  hgvsp: ENSP00000381432.3:p.Lys322Glu
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35040
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13650
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 2473
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys322Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

X-13769397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769397
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769397
    reference: chr 0
allele count: 3
allele frequency: 3.525927318884867e-5
allele num: 85084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.965A>G
  hgvsp: ENSP00000381432.3:p.Lys322Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1276A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.965A>G
  hgvsp: ENSP00000344314.6:p.Lys322Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.545A>G
  hgvsp: ENSP00000369941.1:p.Lys182Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1745A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2403
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 458
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genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys322Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-13769399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769399
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769399
    reference: chr 0
allele count: 1
allele frequency: 1.173929376408715e-5
allele num: 85184
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.967A>G
  hgvsp: ENSP00000344314.6:p.Ser323Gly
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.967A>G
  hgvsp: ENSP00000381432.3:p.Ser323Gly
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1747A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.547A>G
  hgvsp: ENSP00000369941.1:p.Ser183Gly
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1278A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 264
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 567
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genotype quality: GenotypeQuality
  all individuals: 2825
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 396
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 346
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44895
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser323Gly
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-13769406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769406
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769406
    reference: chr 0
allele count: 1
allele frequency: 1.168074196072934e-5
allele num: 85611
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1754C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.974C>T
  hgvsp: ENSP00000344314.6:p.Thr325Ile
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1285C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.554C>T
  hgvsp: ENSP00000369941.1:p.Thr185Ile
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.974C>T
  hgvsp: ENSP00000381432.3:p.Thr325Ile
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14045
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr325Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-13769416-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769416
    reference: chr 0
allele count: 2
allele frequency: 2.323744016359158e-5
allele num: 86068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.984T>G
  hgvsp: ENST00000398395.3:c.984T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1764T>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.984T>G
  hgvsp: ENST00000340096.6:c.984T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1295T>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.564T>G
  hgvsp: ENST00000380567.1:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14467
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 302
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu328Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-13769436-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769437
    reference: chr 0
allele count: 3
allele frequency: 3.480682213713888e-5
allele num: 86190
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1007dupA
  hgvsp: ENSP00000344314.6:p.Ser337GlufsTer3
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1787dupA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1007dupA
  hgvsp: ENSP00000381432.3:p.Ser337GlufsTer3
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.587dupA
  hgvsp: ENSP00000369941.1:p.Ser197GlufsTer3
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1318dupA
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser337GlufsTer3
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

X-13769436-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769434
    reference: chr 0
allele count: 1
allele frequency: 1.160227404571296e-5
allele num: 86190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1786_935+1787delAA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.586_587delAA
  hgvsp: ENSP00000369941.1:p.Lys196GlufsTer3
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1006_1007delAA
  hgvsp: ENSP00000344314.6:p.Lys336GlufsTer3
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1317_1318delAA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1006_1007delAA
  hgvsp: ENSP00000381432.3:p.Lys336GlufsTer3
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys336GlufsTer3
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: TAA
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

X-13769440-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769440
    reference: chr 0
allele count: 1
allele frequency: 1.160671796836009e-5
allele num: 86157
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.588G>T
  hgvsp: ENSP00000369941.1:p.Lys196Asn
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1008G>T
  hgvsp: ENSP00000381432.3:p.Lys336Asn
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1319G>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1008G>T
  hgvsp: ENSP00000344314.6:p.Lys336Asn
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1788G>T
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys336Asn
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-13769452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769452
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769452
    reference: chr 0
allele count: 180
allele frequency: 2.091977267180363e-3
allele num: 86043
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1020G>A
  hgvsp: ENST00000398395.3:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.600G>A
  hgvsp: ENST00000380567.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1331G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1020G>A
  hgvsp: ENST00000340096.6:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1800G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34663
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14961
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 9.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu340Glu
num of homozygotes: 3
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-13769462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769462
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769462
    reference: chr 0
allele count: 2
allele frequency: 2.332606337691419e-5
allele num: 85741
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.610C>T
  hgvsp: ENSP00000369941.1:p.Arg204Ter
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1030C>T
  hgvsp: ENSP00000381432.3:p.Arg344Ter
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1341C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1810C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1030C>T
  hgvsp: ENSP00000344314.6:p.Arg344Ter
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 127
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genotype depth: GenotypeDepth
  all individuals: 100
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 167
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 108
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genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg344Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

X-13769487-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769487
    reference: chr 0
allele count: 1
allele frequency: 1.212194678465361e-5
allele num: 82495
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1835A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.635A>C
  hgvsp: ENSP00000369941.1:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1055A>C
  hgvsp: ENSP00000381432.3:p.Asn352Thr
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1366A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1055A>C
  hgvsp: ENSP00000344314.6:p.Lys352Thr
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
hgvs: p.Lys352Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

X-13769524-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769524
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769524
    reference: chr 0
allele count: 11
allele frequency: 1.581686941017456e-4
allele num: 69546
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1055+37A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1055+37A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1366+37A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.635+37A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1872A>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS

X-13769529-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013769529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013769529
    reference: chr 0
allele count: 1
allele frequency: 1.499857513536214e-5
allele num: 66673
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1055+42A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.635+42A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1055+42A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1366+42A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.935+1877A>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-13770844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013770844
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013770844
    reference: chr 0
allele count: 254
allele frequency: 2.589458660413906e-2
allele num: 9809
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1077C>T
  hgvsp: ENST00000398395.3:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-643C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1388C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-643C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-643C>T
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 491
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  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1613
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  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 277
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Val359Val
num of homozygotes: 3
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-13770851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013770851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013770851
    reference: chr 0
allele count: 1
allele frequency: 1.019160211985324e-4
allele num: 9812
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-636G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1084G>A
  hgvsp: ENSP00000381432.3:p.Ala362Thr
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-636G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1395G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-636G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala362Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

X-13770867-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013770867
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013770867
    reference: chr 0
allele count: 4
allele frequency: 4.084550188910446e-4
allele num: 9793
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1411T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-620T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-620T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.1100T>C
  hgvsp: ENSP00000381432.3:p.Ile367Thr
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-620T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 47
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile367Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-13770883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013770883
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013770883
    reference: chr 0
allele count: 4
allele frequency: 4.095423364390294e-4
allele num: 9767
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-604G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.*12G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-604G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-604G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1427G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-13770921-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013770921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013770921
    reference: chr 0
allele count: 1
allele frequency: 1.03831377842384e-4
allele num: 9631
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-566A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-566A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-566A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1465A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000381432
  ensembl transcript: ENST00000398395
  gene symbol: OFD1
  hgvsc: ENST00000398395.3:c.*50A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-13771443-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771443
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771444
    reference: chr 0
allele count: 5
allele frequency: 5.773738726775136e-5
allele num: 86599
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-39dupA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-39dupA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.1992dupA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-39dupA
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23939
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13784
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 4884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-13771463-ATATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771459
    reference: chr 0
allele count: 1
allele frequency: 1.148527587632655e-5
allele num: 87068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936-21_936-18delTTTA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2010_2013delTTTA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056-21_1056-18delTTTA
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636-21_636-18delTTTA
  variant of: http://identifiers.org/hgnc/2567
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1671
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: ATATT
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

X-13771487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771487
    reference: chr 0
allele count: 1
allele frequency: 1.142752662613704e-5
allele num: 87508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2031G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.636G>A
  hgvsp: ENST00000380567.1:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.936G>A
  hgvsp: ENST00000380550.3:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1056G>A
  hgvsp: ENST00000340096.6:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
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genotype quality: GenotypeQuality
  all individuals: 105
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
hgvs: c.1056G>A
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-13771489-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771489
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771489
    reference: chr 0
allele count: 1
allele frequency: 1.14234798204229e-5
allele num: 87539
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2033A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.638A>G
  hgvsp: ENSP00000369941.1:p.Tyr213Cys
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1058A>G
  hgvsp: ENSP00000344314.6:p.Tyr353Cys
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.938A>G
  hgvsp: ENSP00000369923.3:p.Tyr313Cys
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
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genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2219
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 32792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13815
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr353Cys
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

X-13771504-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771504
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771504
    reference: chr 0
allele count: 1
allele frequency: 1.141200771451722e-5
allele num: 87627
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.653A>G
  hgvsp: ENSP00000369941.1:p.Lys218Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.953A>G
  hgvsp: ENSP00000369923.3:p.Lys318Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1073A>G
  hgvsp: ENSP00000344314.6:p.Lys358Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2048A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17174
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
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genotype quality: GenotypeQuality
  all individuals: 5448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 21
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13816
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genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys358Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

X-13771515-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771515
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771515
    reference: chr 0
allele count: 1
allele frequency: 1.140758147865071e-5
allele num: 87661
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.964A>G
  hgvsp: ENSP00000369923.3:p.Ile322Val
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.664A>G
  hgvsp: ENSP00000369941.1:p.Ile222Val
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1084A>G
  hgvsp: ENSP00000344314.6:p.Ile362Val
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2059A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19175
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile362Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

X-13771533-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771533
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771533
    reference: chr 0
allele count: 5
allele frequency: 5.703530485370444e-5
allele num: 87665
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1102C>G
  hgvsp: ENSP00000344314.6:p.Leu368Val
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.982C>G
  hgvsp: ENSP00000369923.3:p.Leu328Val
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.682C>G
  hgvsp: ENSP00000369941.1:p.Leu228Val
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2077C>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19068
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu368Val
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

X-13771533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771533
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771533
    reference: chr 0
allele count: 1
allele frequency: 1.140706097074089e-5
allele num: 87665
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2077C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.682C>T
  hgvsp: ENST00000380567.1:c.682C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.982C>T
  hgvsp: ENST00000380550.3:c.982C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1102C>T
  hgvsp: ENST00000340096.6:c.1102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu368Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

X-13771537-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771537
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771537
    reference: chr 0
allele count: 1
allele frequency: 1.140758147865071e-5
allele num: 87661
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.986T>C
  hgvsp: ENSP00000369923.3:p.Ile329Thr
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.686T>C
  hgvsp: ENSP00000369941.1:p.Ile229Thr
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2081T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1106T>C
  hgvsp: ENSP00000344314.6:p.Ile369Thr
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Ile369Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-13771552-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771552
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771552
    reference: chr 0
allele count: 3
allele frequency: 3.423602314355165e-5
allele num: 87627
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.701A>G
  hgvsp: ENSP00000369941.1:p.Lys234Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2096A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1121A>G
  hgvsp: ENSP00000344314.6:p.Lys374Arg
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1001A>G
  hgvsp: ENSP00000369923.3:p.Lys334Arg
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys374Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
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site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

X-13771559-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771559
    reference: chr 0
allele count: 2
allele frequency: 2.283496032425644e-5
allele num: 87585
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1128A>C
  hgvsp: ENSP00000344314.6:p.Lys376Asn
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2103A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.708A>C
  hgvsp: ENSP00000369941.1:p.Lys236Asn
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1008A>C
  hgvsp: ENSP00000369923.3:p.Lys336Asn
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29
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  variant carriers: 0
hgvs: p.Lys376Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

X-13771566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771566
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771566
    reference: chr 0
allele count: 1
allele frequency: 1.142674314966748e-5
allele num: 87514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+6G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+6G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+6G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+6G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.1129+6G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

X-13771568-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771568
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771568
    reference: chr 0
allele count: 7
allele frequency: 8.001005840734264e-5
allele num: 87489
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+8T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+8T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+8T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+8T>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.1129+8T>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
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site quality: QD

X-13771569-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771570
    reference: chr 0
allele count: 18
allele frequency: 2.058271966335818e-4
allele num: 87452
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+15dupG
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+15dupG
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+15dupG
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+15dupG
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
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X-13771571-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771571
    reference: chr 0
allele count: 1
allele frequency: 1.143484425742121e-5
allele num: 87452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+11G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+11G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+11G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+11G>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
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site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-13771574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771574
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771574
    reference: chr 0
allele count: 1
allele frequency: 1.144256404975227e-5
allele num: 87393
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+14G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+14G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+14G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+14G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13862
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-13771575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771575
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771575
    reference: chr 0
allele count: 1
allele frequency: 1.156697858952263e-5
allele num: 86453
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+15G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+15G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+15G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+15G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5221
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31409
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-13771576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771576
    reference: chr 0
allele count: 29270
allele frequency: 3.361199788704899e-1
allele num: 87082
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+16A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+16A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+16A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+16A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 3.75e1
  variant carriers: 1462
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1445
genotype depth: GenotypeDepth
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  variant carriers: 57
genotype depth: GenotypeDepth
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  variant carriers: 757
genotype depth: GenotypeDepth
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  variant carriers: 1572
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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  variant carriers: 166
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1243
genotype depth: GenotypeDepth
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  variant carriers: 1721
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1666
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1101
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 986
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.25e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.25e1
  variant carriers: 1112
genotype depth: GenotypeDepth
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  variant carriers: 1019
genotype depth: GenotypeDepth
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  variant carriers: 1102
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1051
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1011
genotype depth: GenotypeDepth
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  variant carriers: 7742
genotype quality: GenotypeQuality
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  variant carriers: 63
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
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  variant carriers: 212
genotype quality: GenotypeQuality
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  variant carriers: 23218
genotype quality: GenotypeQuality
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  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 227
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 72
num of homozygotes: 3768
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum

X-13771579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771579
    reference: chr 0
allele count: 1
allele frequency: 1.150867178418939e-5
allele num: 86891
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+19A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+19A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+19A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+19A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6592
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-13771591-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771591
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771591
    reference: chr 0
allele count: 1
allele frequency: 1.16702455419662e-5
allele num: 85688
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+31T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+31T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+31T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+31T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

X-13771594-C-CTGGAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771601
    reference: chr 0
allele count: 1
allele frequency: 1.173819137947225e-5
allele num: 85192
alternate allele: CTGGAAAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+34_1129+35insTGGAAAG
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+34_709+35insTGGAAAG
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+34_1009+35insTGGAAAG
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+34_2104+35insTGGAAAG
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-13771600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771600
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 83720
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+40T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+40T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+40T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+40T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10025
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-13771604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771604
    reference: chr 0
allele count: 1
allele frequency: 1.205167759352102e-5
allele num: 82976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+44G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+44G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+44G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+44G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

X-13771615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771615
    reference: chr 0
allele count: 7
allele frequency: 8.79430129276229e-5
allele num: 79597
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+55G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+55G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+55G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+55G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
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site quality: ClippingRankSum

X-13771624-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771624
    reference: chr 0
allele count: 1
allele frequency: 1.321492758219685e-5
allele num: 75672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+64G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+64G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+64G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+64G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

X-13771630-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771630
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771630
    reference: chr 0
allele count: 1
allele frequency: 1.368588164449554e-5
allele num: 73068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+70T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+70T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+70T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+70T>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-13771638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771638
    reference: chr 0
allele count: 9
allele frequency: 1.297241200380524e-4
allele num: 69378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+78A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+78A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+78A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+78A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
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filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-13771645-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771645
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771645
    reference: chr 0
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+85A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+85A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.709+85A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+85A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
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site quality: QD
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site quality: VQSLOD
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site quality: DP

X-13771655-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013771655
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013771655
    reference: chr 0
allele count: 2
allele frequency: 3.204665993686808e-5
allele num: 62409
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1009+95G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2104+95G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1129+95G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
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  ensembl gene: ENSG00000046651
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  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
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X-13773220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773220
    reference: chr 0
allele count: 6
allele frequency: 7.062313142964759e-5
allele num: 84958
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1130-50T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-50T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-50T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000046651
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  hgvsc: ENST00000490265.1:n.2105-50T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
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site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
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X-13773236-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773236
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773236
    reference: chr 0
allele count: 2
allele frequency: 2.344665885111372e-5
allele num: 85300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-34A>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2105-34A>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-34A>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1130-34A>T
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS

X-13773251-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773251
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773251
    reference: chr 0
allele count: 1
allele frequency: 1.165297442172114e-5
allele num: 85815
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-19T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-19T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2105-19T>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
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  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

X-13773252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773252
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773252
    reference: chr 0
allele count: 1
allele frequency: 1.165053068167255e-5
allele num: 85833
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2105-18G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-18G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-18G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1130-18G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-13773256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773256
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773256
    reference: chr 0
allele count: 1
allele frequency: 1.162493315663435e-5
allele num: 86022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-14G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1130-14G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2105-14G>A
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-14G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

X-13773260-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773261
    reference: chr 0
allele count: 1
allele frequency: 1.160510160266453e-5
allele num: 86169
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2105-4dupT
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-4dupT
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1130-4dupT
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-4dupT
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-13773260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773260
    reference: chr 0
allele count: 1
allele frequency: 1.160510160266453e-5
allele num: 86169
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2105-10C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1130-10C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1010-10C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.710-10C>T
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-13773330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773330
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773330
    reference: chr 0
allele count: 2
allele frequency: 2.315431191173576e-5
allele num: 86377
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.770A>G
  hgvsp: ENSP00000369941.1:p.Asn257Ser
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1190A>G
  hgvsp: ENSP00000344314.6:p.Asn397Ser
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2165A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1070A>G
  hgvsp: ENSP00000369923.3:p.Asn357Ser
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
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genotype depth: GenotypeDepth
  all individuals: 1299
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22658
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 461
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4984
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5988
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 362
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genotype quality: GenotypeQuality
  all individuals: 1233
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 860
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn397Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-13773334-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773334
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773334
    reference: chr 0
allele count: 1
allele frequency: 1.160685268582571e-5
allele num: 86156
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1194A>G
  hgvsp: ENST00000340096.6:c.1194A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.774A>G
  hgvsp: ENST00000380567.1:c.774A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2169A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1074A>G
  hgvsp: ENST00000380550.3:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1373
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln398Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-13773336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773336
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773336
    reference: chr 0
allele count: 1
allele frequency: 1.161723533033609e-5
allele num: 86079
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2171C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1076C>T
  hgvsp: ENSP00000369923.3:p.Ser359Phe
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1196C>T
  hgvsp: ENSP00000344314.6:p.Ser399Phe
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.776C>T
  hgvsp: ENSP00000369941.1:p.Ser259Phe
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4982
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser399Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

X-13773342-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773342
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773342
    reference: chr 0
allele count: 1
allele frequency: 1.169043722235212e-5
allele num: 85540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.782A>G
  hgvsp: ENSP00000369941.1:p.Asn261Ser
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1202A>G
  hgvsp: ENSP00000344314.6:p.Asn401Ser
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1082A>G
  hgvsp: ENSP00000369923.3:p.Asn361Ser
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2177A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 559
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn401Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

X-13773344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773344
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773344
    reference: chr 0
allele count: 1
allele frequency: 1.171056175564742e-5
allele num: 85393
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2179C>T
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.784C>T
  hgvsp: ENSP00000369941.1:p.Arg262Cys
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1084C>T
  hgvsp: ENSP00000369923.3:p.Arg362Cys
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1204C>T
  hgvsp: ENSP00000344314.6:p.Arg402Cys
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg402Cys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-13773349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773349
    reference: chr 0
allele count: 1
allele frequency: 1.182354540832614e-5
allele num: 84577
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.789G>A
  hgvsp: ENST00000380567.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1209G>A
  hgvsp: ENST00000340096.6:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1089G>A
  hgvsp: ENST00000380550.3:c.1089G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2184G>A
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2990
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val403Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-13773355-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773355
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773355
    reference: chr 0
allele count: 1
allele frequency: 1.192819228245959e-5
allele num: 83835
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2190A>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1095A>C
  hgvsp: ENSP00000369923.3:p.Glu365Asp
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1215A>C
  hgvsp: ENSP00000344314.6:p.Glu405Asp
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.795A>C
  hgvsp: ENSP00000369941.1:p.Glu265Asp
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu405Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

X-13773387-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773387
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773387
    reference: chr 0
allele count: 1
allele frequency: 1.317957166392092e-5
allele num: 75875
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1101+26G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1221+26G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.801+26G>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2196+26G>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

X-13773390-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773390
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773390
    reference: chr 0
allele count: 1
allele frequency: 1.335826876836762e-5
allele num: 74860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1101+29A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2196+29A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1221+29A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.801+29A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-13773390-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773390
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773389
    reference: chr 0
allele count: 1
allele frequency: 1.335826876836762e-5
allele num: 74860
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1221+30delT
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2196+30delT
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.801+30delT
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1101+30delT
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

X-13773404-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773404
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773404
    reference: chr 0
allele count: 3
allele frequency: 4.344614849893557e-5
allele num: 69051
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2196+43A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1101+43A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.801+43A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1221+43A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
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X-13773407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773407
    reference: chr 0
allele count: 1
allele frequency: 1.49126862221692e-5
allele num: 67057
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.801+46T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1221+46T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2196+46T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1101+46T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-13773408-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013773408
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013773408
    reference: chr 0
allele count: 17
allele frequency: 2.531306302952694e-4
allele num: 67159
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2196+47A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.801+47A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1101+47A>G
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1221+47A>G
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14385
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14022
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12851
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4521
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4981
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-13774663-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24013774663
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24013774663
    reference: chr 0
allele count: 1
allele frequency: 1.243394466894622e-5
allele num: 80425
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369923
  ensembl transcript: ENST00000380550
  gene symbol: OFD1
  hgvsc: ENST00000380550.3:c.1102-34T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000344314
  ensembl transcript: ENST00000340096
  gene symbol: OFD1
  hgvsc: ENST00000340096.6:c.1222-34T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl protein: ENSP00000369941
  ensembl transcript: ENST00000380567
  gene symbol: OFD1
  hgvsc: ENST00000380567.1:c.802-34T>C
  variant of: http://identifiers.org/hgnc/2567
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000046651
  ensembl transcript: ENST00000490265
  gene symbol: OFD1
  hgvsc: ENST00000490265.1:n.2197-34T>C
  variant of: http://identifiers.org/hgnc/2567
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T

GenotypeQuality
all individuals: 1988
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5675
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38621
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.176609012825038e-4
allele num: 8499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 1.335208e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 2.372e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

QD
type: SiteQuality
SIO_000300: 1.384e1

GenotypeQuality
all individuals: 4838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5725
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.02543206407194e-4
allele num: 7117
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9005
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.517e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

DP
type: SiteQuality
SIO_000300: 1.251454e6

QD
type: SiteQuality
SIO_000300: 1.466e1

GenotypeQuality
all individuals: 2067
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7191
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.446004451728102e-5
allele num: 40883
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5799
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.296769e6

QD
type: SiteQuality
SIO_000300: 3.23e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.379999999999999e-2

GenotypeQuality
all individuals: 627
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8819
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7233
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.424653880658536e-5
allele num: 41243
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.058e1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

DP
type: SiteQuality
SIO_000300: 1.321228e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 642
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2829
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4381
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.497445794074242e-4
allele num: 44045
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9071
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9547
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 1.441312e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.803e0

QD
type: SiteQuality
SIO_000300: 1.305e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45963
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4453
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.040608101214162e-4
allele num: 9801
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.09e0

QD
type: SiteQuality
SIO_000300: 2.364e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 1.500266e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

VQSLOD
type: SiteQuality
SIO_000300: -2.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 2.396e0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4308
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9211
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9837
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4459
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.224889759921607e-4
allele num: 8164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 6.032e1

FS
type: SiteQuality
SIO_000300: 3.137e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.62e-1

DP
type: SiteQuality
SIO_000300: 1.50886e6

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
all individuals: 1104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8173
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.162255665109843e-5
allele num: 46248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6463
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.058e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.009e1

FS
type: SiteQuality
SIO_000300: 1.321e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.138e0

DP
type: SiteQuality
SIO_000300: 1.509856e6

VQSLOD
type: SiteQuality
SIO_000300: -2.018e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.724949562878278e-4
allele num: 4461
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8177
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9849
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6469
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.786e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

QD
type: SiteQuality
SIO_000300: 1.857e1

DP
type: SiteQuality
SIO_000300: 1.511593e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.646e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8187
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.085069444444444e-4
allele num: 9216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6477
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4461
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9861
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 9.9e-1

DP
type: SiteQuality
SIO_000300: 1.513191e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.11e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

GenotypeQuality
all individuals: 2825
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8247
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.083893344894862e-4
allele num: 9226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6521
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.584e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

DP
type: SiteQuality
SIO_000300: 1.5234e6

QD
type: SiteQuality
SIO_000300: 2.957e1

GenotypeQuality
all individuals: 1095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.130152305889871e-5
allele num: 46945
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.007252215954875e-4
allele num: 9928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6557
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.35e-2

QD
type: SiteQuality
SIO_000300: 2.445e1

DP
type: SiteQuality
SIO_000300: 1.534194e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4452
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9935
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.249214773096502e-4
allele num: 9233
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.538432e6

QD
type: SiteQuality
SIO_000300: 2.129e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

GenotypeQuality
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4452
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.126031125095671e-5
allele num: 47036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6581
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9233
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9935
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.129e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

DP
type: SiteQuality
SIO_000300: 1.538432e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46189
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9229
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.007861318282604e-4
allele num: 9922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.537023e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.079e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: -3.377e-1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46266
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.501950585175553e-4
allele num: 9228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

African
type: Population
allele count: 173
allele frequency: 2.087355212355212e-2
allele num: 8288
num of homozygotes: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9909
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.13001618812303e-5
allele num: 46948
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.614e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.188e0

FS
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.113e1

QD
type: SiteQuality
SIO_000300: 1.387e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

DP
type: SiteQuality
SIO_000300: 1.541469e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.520912547528517e-4
allele num: 6575
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9865
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.138671457290731e-5
allele num: 46758
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.851e0

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 1.526852e6

QD
type: SiteQuality
SIO_000300: 1.25e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37595
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.236085955144116e-5
allele num: 44721
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8007
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 1.302e1

FS
type: SiteQuality
SIO_000300: 2.218e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

DP
type: SiteQuality
SIO_000300: 1.419797e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8205
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.96078431372549e-3
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.714809284647753e-5
allele num: 36835
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8367
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 2.636976267213595e-3
allele num: 3413
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.922e1

DP
type: SiteQuality
SIO_000300: 1.049562e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.585e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.216e0

GenotypeQuality
all individuals: 853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7953
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.847948053427505e-5
allele num: 35113
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8113
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3260
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.011011e6

MQRankSum
type: SiteQuality
SIO_000300: -9.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.913e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 741
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 8

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.329113924050633e-4
allele num: 3160
num of homozygotes: 0

South Asian
type: Population
allele count: 196
allele frequency: 4.302963776070252e-2
allele num: 4555
num of homozygotes: 1

East Asian
type: Population
allele count: 6
allele frequency: 3.726708074534162e-2
allele num: 161
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 3.278688524590164e-2
allele num: 122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1161
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 8.823529411764706e-2
allele num: 510
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 7.142857142857143e-3
allele num: 140
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.21368e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.521e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.529999999999999e0

QD
type: SiteQuality
SIO_000300: 1.685e1

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 125
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3163
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.194907813871817e-4
allele num: 4556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.14845e5

QD
type: SiteQuality
SIO_000300: 3.052e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.335128286347799e-4
allele num: 3157
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.731601731601732e-3
allele num: 1155
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.601e1

DP
type: SiteQuality
SIO_000300: 2.14074e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

FS
type: SiteQuality
SIO_000300: 1.917e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

GenotypeQuality
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 8.032128514056224e-3
allele num: 498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1153
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3143
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.809e0

QD
type: SiteQuality
SIO_000300: 1.373e1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 2.12136e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.591e0

GenotypeQuality
all individuals: 197
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 139
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 497
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.222716159146477e-4
allele num: 4499
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 123
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.0275e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.67e-2

QD
type: SiteQuality
SIO_000300: 3.32e1

GenotypeQuality
all individuals: 866
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6545
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9949
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.966587112171838e-4
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47373
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.297e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.4215e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 2.007199e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098547804918996e-5
allele num: 47652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8417
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.071999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

DP
type: SiteQuality
SIO_000300: 2.065615e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 5.813e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8467
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9303
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.929500546122529e-5
allele num: 10071
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.766e0

DP
type: SiteQuality
SIO_000300: 2.089833e6

FS
type: SiteQuality
SIO_000300: 3.848e0

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.395e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.035e1

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10081
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088075003654131e-5
allele num: 47891
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.101e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e0

MQRankSum
type: SiteQuality
SIO_000300: -1.375e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 2.090833e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 1751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10099
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08611481975968e-5
allele num: 47936
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.77e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.094797e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 3.187e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.896091044037604e-5
allele num: 10105
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.879e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.182e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.095945e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.042600663094022e-4
allele num: 47957
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.599e-1

FS
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 2.096872e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.677e1

MQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47957
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.892175289346128e-5
allele num: 10109
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.677e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.599e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 2.096872e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178550383028874e-4
allele num: 8485
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47956
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.429e1

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.161e0

MQ
type: SiteQuality
SIO_000300: 5.827e1

FS
type: SiteQuality
SIO_000300: 7.76e0

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.096442e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47932
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.52147701582517e-4
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.598e1

VQSLOD
type: SiteQuality
SIO_000300: -1.418e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

FS
type: SiteQuality
SIO_000300: 2.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.31e-2

DP
type: SiteQuality
SIO_000300: 2.095692e6

MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

GenotypeQuality
all individuals: 1322
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1749
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47911
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.360996340455672e-4
allele num: 8471
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10097
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.331e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.199e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 2.094412e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 950
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088641964994361e-5
allele num: 47878
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8454
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 2.093266e6

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.263e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.147305132059266e-4
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47870
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.919261276192731e-4
allele num: 8447
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 627
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.309e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

DP
type: SiteQuality
SIO_000300: 2.092948e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.05e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.090344697840674e-5
allele num: 47839
num of homozygotes: 0

South Asian
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East Asian
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allele count: 15
allele frequency: 2.261079288513717e-3
allele num: 6634
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Other
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allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.52e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.407e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8441
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47847
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.507386192342478e-4
allele num: 6634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4520
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Other
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South Asian
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele num: 9313
num of homozygotes: 0

African
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.091437654243527e-5
allele num: 47814
num of homozygotes: 0

Other
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4407
num of homozygotes: 0

Latino
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.111085308957335e-5
allele num: 47369
num of homozygotes: 0

East Asian
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Other
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

FS
type: SiteQuality
SIO_000300: 3.855e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 1.62e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

DP
type: SiteQuality
SIO_000300: 2.139287e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 51

GenotypeQuality
all individuals: 619
bin: 9.25e1
variant carriers: 402

GenotypeQuality
all individuals: 949
bin: 7.75e1
variant carriers: 336

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 142

European (Non-Finnish)
type: Population
allele count: 11586
allele frequency: 2.433573484005125e-1
allele num: 47609
num of homozygotes: 873

African
type: Population
allele count: 2366
allele frequency: 2.812982998454405e-1
allele num: 8411
num of homozygotes: 260

European (Finnish)
type: Population
allele count: 1139
allele frequency: 2.527179942311959e-1
allele num: 4507
num of homozygotes: 79

South Asian
type: Population
allele count: 4786
allele frequency: 4.764085208043002e-1
allele num: 10046
num of homozygotes: 431

Latino
type: Population
allele count: 6250
allele frequency: 6.730562136549645e-1
allele num: 9286
num of homozygotes: 1638

East Asian
type: Population
allele count: 2955
allele frequency: 4.479308776716689e-1
allele num: 6597
num of homozygotes: 467

Other
type: Population
allele count: 188
allele frequency: 3.003194888178914e-1
allele num: 626
num of homozygotes: 20

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.857e-1

QD
type: SiteQuality
SIO_000300: 2.374e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
SIO_000300: 4.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 3.050054e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

GenotypeQuality
all individuals: 436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4507
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.200768491834774e-4
allele num: 8328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47567
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

DP
type: SiteQuality
SIO_000300: 1.759059e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.447e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 1.026e0

QD
type: SiteQuality
SIO_000300: 9.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.45e-1

GenotypeQuality
all individuals: 3051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4457
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.017811704834606e-4
allele num: 9825
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 3.346e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.717491e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40924
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4437
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.22684333210649e-4
allele num: 8151
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46505
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.700247e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.66e0

MQ
type: SiteQuality
SIO_000300: 4.843e1

VQSLOD
type: SiteQuality
SIO_000300: -2.536e0

FS
type: SiteQuality
SIO_000300: 1.1105e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.68e-1

QD
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.405e0

GenotypeQuality
all individuals: 675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9073
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8005
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

QD
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.646277e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.259e0

VQSLOD
type: SiteQuality
SIO_000300: -3.203e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.217737464238983e-5
allele num: 45091
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4365
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7935
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6437
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.743e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.094e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 1.620166e6

MQ
type: SiteQuality
SIO_000300: 5.435e1

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8711
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43047
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9197
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.127758981794748e-3
allele num: 6207
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.495513e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.318e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.17e0

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeQuality
all individuals: 3850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 547
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8859
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.705611461709023e-4
allele num: 5863
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4095
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

QD
type: SiteQuality
SIO_000300: 6.99e0

VQSLOD
type: SiteQuality
SIO_000300: -2.06e0

DP
type: SiteQuality
SIO_000300: 1.346613e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.067e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.819e0

GenotypeQuality
all individuals: 388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3599
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.562656962738968e-5
allele num: 39022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.309999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-1

DP
type: SiteQuality
SIO_000300: 1.241969e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 381
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.908292895698163e-4
allele num: 36682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3873
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.410509822827528e-4
allele num: 8297
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.111323e6

QD
type: SiteQuality
SIO_000300: 1.947e1

VQSLOD
type: SiteQuality
SIO_000300: -7.941e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

GenotypeQuality
all individuals: 4368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.856408352138022e-5
allele num: 35009
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3765
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.047606e6

GenotypeQuality
all individuals: 1931
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6283
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4927
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.626050420168067e-4
allele num: 7616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7063
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32517
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.46e-2

DP
type: SiteQuality
SIO_000300: 1.002287e6

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9147
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.344387183508851e-3
allele num: 4463
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

FS
type: SiteQuality
SIO_000300: 1.687e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

QD
type: SiteQuality
SIO_000300: 2.422e1

DP
type: SiteQuality
SIO_000300: 1.678445e6

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.628664495114007e-3
allele num: 614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.090869422930075e-4
allele num: 9167
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9867
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.38e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.125e1

DP
type: SiteQuality
SIO_000300: 1.732624e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4989
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 369
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.555451858764971e-4
allele num: 6429
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8283
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9929
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.616e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

DP
type: SiteQuality
SIO_000300: 1.776155e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.133697484370666e-5
allele num: 46867
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9211
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4493
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8285
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9931
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

DP
type: SiteQuality
SIO_000300: 1.778749e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.868e0

QD
type: SiteQuality
SIO_000300: 2.62e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -4.186e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9225
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46993
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.222222222222222e-4
allele num: 4500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6443
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 1.787695e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.516e0

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9229
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124269782262347e-5
allele num: 47075
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 1.5206e1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
SIO_000300: 9.25e0

VQSLOD
type: SiteQuality
SIO_000300: -8.689e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 1.796803e6

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9229
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124269782262347e-5
allele num: 47075
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5206e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -8.689e-1

DP
type: SiteQuality
SIO_000300: 1.796803e6

QD
type: SiteQuality
SIO_000300: 9.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 560
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.120261216181834e-5
allele num: 47164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4497
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.011429149388085e-4
allele num: 9887
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9273
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

DP
type: SiteQuality
SIO_000300: 1.809279e6

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

FS
type: SiteQuality
SIO_000300: 6.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.88e-2

QD
type: SiteQuality
SIO_000300: 2.159e1

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6521
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8387
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.015950421619425e-4
allele num: 9843
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.80295e6

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.43e1

GenotypeQuality
all individuals: 854
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6515
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4489
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.128565346956152e-5
allele num: 46980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9253
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8387
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.977e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.642e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.801404e6

FS
type: SiteQuality
SIO_000300: 9.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1361
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8361
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.025010250102501e-4
allele num: 9756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46635
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.161e0

DP
type: SiteQuality
SIO_000300: 1.784853e6

QD
type: SiteQuality
SIO_000300: 1.668e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: -1.312e0

VQSLOD
type: SiteQuality
SIO_000300: -3.847e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 1352
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variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.25e1
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GenotypeQuality
all individuals: 4981
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.085658451851048e-4
allele num: 9211
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6457
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.231e1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.781935e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

GenotypeQuality
all individuals: 1181
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 230
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9647
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.203948952564411e-4
allele num: 8306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46039
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6391
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4437
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.94e0

VQSLOD
type: SiteQuality
SIO_000300: -7.235e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.756663e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9077
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45587
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.578531965272297e-4
allele num: 6335
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.073e0

DP
type: SiteQuality
SIO_000300: 1.73095e6

QD
type: SiteQuality
SIO_000300: 1.675e1

MQRankSum
type: SiteQuality
SIO_000300: 9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 4.299e0

GenotypeQuality
all individuals: 347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16749
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.458452158520995e-5
allele num: 40676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5609
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4127
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7769
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8401
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 3.452e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

DP
type: SiteQuality
SIO_000300: 1.427254e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 3596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8607
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.49744012387303e-5
allele num: 40041
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4103
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.111e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

DP
type: SiteQuality
SIO_000300: 1.380297e6

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 2.387e0

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4103
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.49744012387303e-5
allele num: 40041
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.387e0

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 6.111e1

DP
type: SiteQuality
SIO_000300: 1.380297e6

GenotypeQuality
all individuals: 14986
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.2223318533136e-5
allele num: 36486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8005
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 1.250527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.508e1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -7.121e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

GenotypeQuality
all individuals: 4359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.393728222996516e-4
allele num: 7175
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4821
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7817
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 1.234636e6

MQ
type: SiteQuality
SIO_000300: 5.86e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.373e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

GenotypeQuality
all individuals: 1202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4530
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 16
allele frequency: 2.225003476567932e-3
allele num: 7191
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.310100877767588e-4
allele num: 7633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35349
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3801
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7837
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.234278e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
all individuals: 1871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6137
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43817
num of homozygotes: 0