21-44513364-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513364
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513364
    reference: chr 21
allele count: 1
allele frequency: 8.401666890711118e-6
allele num: 119024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3046T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-5T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-5T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 9.25e1
  variant carriers: 0
hgvs: c.576-5T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

21-44513370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513370
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513370
    reference: chr 21
allele count: 3
allele frequency: 2.523638076651301e-5
allele num: 118876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-11C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3040C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-11C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

21-44513378-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513378
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513378
    reference: chr 21
allele count: 1
allele frequency: 8.431418839162254e-6
allele num: 118604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3032T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-19T>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-19T>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

21-44513379-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513379
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513379
    reference: chr 21
allele count: 12
allele frequency: 1.012094529629067e-4
allele num: 118566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3031T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-20T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-20T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

21-44513379-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513379
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513378
    reference: chr 21
allele count: 1
allele frequency: 8.434121080242228e-6
allele num: 118566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3030delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-21delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-21delC
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29987
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: AG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-44513380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513380
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513380
    reference: chr 21
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3030C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-21C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

21-44513380-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513380
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513380
    reference: chr 21
allele count: 3
allele frequency: 2.532842524737429e-5
allele num: 118444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3030C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-21C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-21C>G
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29983
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/21-44513381-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513381
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513381
    reference: chr 21
allele count: 1
allele frequency: 8.441240524707511e-6
allele num: 118466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3029T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-22T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-22T>G
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

21-44513386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513386
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513386
    reference: chr 21
allele count: 2
allele frequency: 1.692677477233488e-5
allele num: 118156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3024G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-27G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-27G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29986
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

21-44513387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513387
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513387
    reference: chr 21
allele count: 2
allele frequency: 1.692562878710944e-5
allele num: 118164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3023C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-28C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

21-44513389-GCCATCCAAACCAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513389
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513376
    reference: chr 21
allele count: 1
allele frequency: 8.467113730271625e-6
allele num: 118104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: GCCATCCAAACCAC
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

21-44513390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513390
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513390
    reference: chr 21
allele count: 1
allele frequency: 8.477593719798572e-6
allele num: 117958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3020G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-31G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-31G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29987
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

21-44513393-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513393
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513393
    reference: chr 21
allele count: 1
allele frequency: 8.481908090043937e-6
allele num: 117898
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3017A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-34A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-34A>G
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

21-44513402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513402
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513402
    reference: chr 21
allele count: 2
allele frequency: 1.707475326981525e-5
allele num: 117132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3008G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-43G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-43G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5597
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

21-44513403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513403
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513403
    reference: chr 21
allele count: 2
allele frequency: 1.706542885422711e-5
allele num: 117196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3007C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-44C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-44C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

21-44513404-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513404
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513404
    reference: chr 21
allele count: 1
allele frequency: 8.545547769612032e-6
allele num: 117020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3006C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-45C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-45C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

21-44513407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513407
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513407
    reference: chr 21
allele count: 1
allele frequency: 8.558859275235797e-6
allele num: 116838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3003G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-48G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-48G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

21-44513408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513408
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513408
    reference: chr 21
allele count: 2
allele frequency: 1.71291538198013e-5
allele num: 116760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.3002C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-49C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-49C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

21-44513411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44513411
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44513411
    reference: chr 21
allele count: 1
allele frequency: 8.572212316554656e-6
allele num: 116656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.623-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1383-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.357-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.576-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.576-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*415-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.2999C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4401-52C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.357-52C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

21-44514530-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514530
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514530
    reference: chr 21
allele count: 1
allele frequency: 8.344459279038718e-6
allele num: 119840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1880A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+51A>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+51A>C
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

21-44514532-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514532
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514532
    reference: chr 21
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1878T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+49T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+49T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21533
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

21-44514535-G-GTTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514535
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514538
    reference: chr 21
allele count: 30
allele frequency: 2.500291700698415e-4
allele num: 119986
alternate allele: GTTC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1874_1875insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+45_575+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+45_356+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+45_575+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+45_*414+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+45_4400+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+45_1382+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+45_356+46insGAA
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+45_622+46insGAA
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16110
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21879
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/21-44514543-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514543
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514543
    reference: chr 21
allele count: 2
allele frequency: 1.663921196692125e-5
allele num: 120198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1867T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+38T>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+38T>G
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36194
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

21-44514545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514545
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514545
    reference: chr 21
allele count: 1
allele frequency: 8.3166999334664e-6
allele num: 120240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1865C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+36C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+36C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

21-44514548-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514548
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514548
    reference: chr 21
allele count: 1
allele frequency: 8.308684236764266e-6
allele num: 120356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1862T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+33T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+33T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23090
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

21-44514550-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514550
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514550
    reference: chr 21
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1860A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+31A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+31A>G
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

21-44514553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514553
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514553
    reference: chr 21
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1857C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+28C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+28C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

21-44514559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514559
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514559
    reference: chr 21
allele count: 4
allele frequency: 3.316749585406302e-5
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1851G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+22G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+22G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

21-44514560-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514560
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514560
    reference: chr 21
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1850T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+21T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+21T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

21-44514562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514562
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514562
    reference: chr 21
allele count: 16
allele frequency: 1.326150020721094e-4
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1848G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+19G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+19G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23699
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

21-44514563-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514563
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514563
    reference: chr 21
allele count: 11
allele frequency: 9.115770282588879e-5
allele num: 120670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1847C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+18C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+18C>A
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

21-44514563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514563
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514563
    reference: chr 21
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+18C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1847C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+18C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

21-44514563-G-GCGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514563
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514567
    reference: chr 21
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: GCGTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+17_4400+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+17_622+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+17_356+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+17_356+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+17_1382+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+17_575+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1846_1847insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+17_*414+18insAACG
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+17_575+18insAACG
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8669
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

21-44514569-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514569
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514568
    reference: chr 21
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1840delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+11delC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+11delC
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: AG
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

21-44514570-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514570
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514570
    reference: chr 21
allele count: 4
allele frequency: 3.312025966283576e-5
allele num: 120772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1840C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+11C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+11C>G
  variant of: http://identifiers.org/hgnc/12453
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

21-44514578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514578
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514578
    reference: chr 21
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.575+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1382+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1832G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.575+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*414+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.622+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4400+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.356+3G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.356+3G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 0
hgvs: c.575+3G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

21-44514592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514592
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514592
    reference: chr 21
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.564C>T
  hgvsp: ENST00000291552.4:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1818C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1371C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*403C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.564C>T
  hgvsp: ENST00000380276.2:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4389C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.345C>T
  hgvsp: ENST00000398137.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.611C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.345C>T
  hgvsp: ENST00000459639.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg188Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

21-44514594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514594
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514594
    reference: chr 21
allele count: 1
allele frequency: 8.276501357346223e-6
allele num: 120824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1369C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.562C>T
  hgvsp: ENSP00000291552.4:p.Arg188Cys
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.343C>T
  hgvsp: ENSP00000418705.1:p.Arg115Cys
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*401C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1816C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.609C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.562C>T
  hgvsp: ENSP00000369629.2:p.Arg188Cys
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.343C>T
  hgvsp: ENSP00000381205.1:p.Arg115Cys
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4387C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8633
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg188Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

21-44514598-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514598
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514598
    reference: chr 21
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.558T>C
  hgvsp: ENST00000380276.2:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.339T>C
  hgvsp: ENST00000398137.1:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*397T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4383T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1365T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.339T>C
  hgvsp: ENST00000459639.1:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.558T>C
  hgvsp: ENST00000291552.4:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.605T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1812T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8621
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr186Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

21-44514601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514601
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514601
    reference: chr 21
allele count: 346
allele frequency: 2.869321480105485e-3
allele num: 120586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.336G>A
  hgvsp: ENST00000459639.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.555G>A
  hgvsp: ENST00000380276.2:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.602G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1362G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.336G>A
  hgvsp: ENST00000398137.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*394G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.555G>A
  hgvsp: ENST00000291552.4:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1809G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4380G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 18267
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 23999
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 9.75e1
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 37770
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Leu185Leu
num of homozygotes: 6
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

21-44514622-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514622
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514622
    reference: chr 21
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.581C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.534C>T
  hgvsp: ENST00000291552.4:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.315C>T
  hgvsp: ENST00000398137.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.534C>T
  hgvsp: ENST00000380276.2:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*373C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.315C>T
  hgvsp: ENST00000459639.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1341C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1788C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4359C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser178Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

21-44514628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514628
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514628
    reference: chr 21
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.309C>T
  hgvsp: ENST00000459639.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.528C>T
  hgvsp: ENST00000380276.2:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4353C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.309C>T
  hgvsp: ENST00000398137.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1782C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*367C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.575C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.528C>T
  hgvsp: ENST00000291552.4:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1335C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro176Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

21-44514628-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514628
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514628
    reference: chr 21
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.528C>G
  hgvsp: ENST00000291552.4:c.528C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1782C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.528C>G
  hgvsp: ENST00000380276.2:c.528C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.309C>G
  hgvsp: ENST00000459639.1:c.309C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*367C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.575C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.309C>G
  hgvsp: ENST00000398137.1:c.309C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4353C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1335C>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro176Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

21-44514631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514631
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514631
    reference: chr 21
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1779G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1332G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.525G>A
  hgvsp: ENST00000291552.4:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.525G>A
  hgvsp: ENST00000380276.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.572G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.306G>A
  hgvsp: ENST00000459639.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4350G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.306G>A
  hgvsp: ENST00000398137.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*364G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys175Lys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

21-44514655-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514655
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514655
    reference: chr 21
allele count: 17
allele frequency: 1.406516307315539e-4
allele num: 120866
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.501C>G
  hgvsp: ENST00000291552.4:c.501C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.282C>G
  hgvsp: ENST00000398137.1:c.282C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.282C>G
  hgvsp: ENST00000459639.1:c.282C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*340C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.501C>G
  hgvsp: ENST00000380276.2:c.501C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4326C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1755C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1308C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.548C>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18066
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8695
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly167Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

21-44514658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514658
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514658
    reference: chr 21
allele count: 4
allele frequency: 3.30988829127017e-5
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1752C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4323C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.498C>T
  hgvsp: ENST00000291552.4:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.498C>T
  hgvsp: ENST00000380276.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.279C>T
  hgvsp: ENST00000459639.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1305C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.279C>T
  hgvsp: ENST00000398137.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*337C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.545C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly166Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

21-44514658-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514658
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514658
    reference: chr 21
allele count: 5
allele frequency: 4.137360364087712e-5
allele num: 120850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1305C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.498C>A
  hgvsp: ENST00000380276.2:c.498C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4323C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*337C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.545C>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.498C>A
  hgvsp: ENST00000291552.4:c.498C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.279C>A
  hgvsp: ENST00000459639.1:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.279C>A
  hgvsp: ENST00000398137.1:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1752C>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly166Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

21-44514664-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514664
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514664
    reference: chr 21
allele count: 22
allele frequency: 1.820107220861738e-4
allele num: 120872
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.492A>G
  hgvsp: ENST00000291552.4:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4317A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.273A>G
  hgvsp: ENST00000398137.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1299A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.539A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*331A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.273A>G
  hgvsp: ENST00000459639.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1746A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.492A>G
  hgvsp: ENST00000380276.2:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr164Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

21-44514679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514679
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514679
    reference: chr 21
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-6C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-6C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8707
  bin: 6.75e1
  variant carriers: 0
hgvs: c.483-6C>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

21-44514680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514680
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514680
    reference: chr 21
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-7C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-7C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: c.483-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-44514680-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514680
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514680
    reference: chr 21
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-7C>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-7C>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: c.483-7C>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

21-44514692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514692
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514692
    reference: chr 21
allele count: 6
allele frequency: 4.963846650230819e-5
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-19C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-19C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

21-44514694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514694
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514694
    reference: chr 21
allele count: 13
allele frequency: 1.075464517943712e-4
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-21C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-21C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

21-44514703-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514703
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514703
    reference: chr 21
allele count: 1
allele frequency: 8.273625337150233e-6
allele num: 120866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-30A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-30A>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

21-44514705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514705
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514705
    reference: chr 21
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-32G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-32G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38747
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

21-44514707-TCGTGTGCACA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514707
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514697
    reference: chr 21
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38685
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: TCGTGTGCACA
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

21-44514708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514708
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514708
    reference: chr 21
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-35G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-35G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

21-44514717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514717
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514717
    reference: chr 21
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-44T>C
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-44T>C
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

21-44514718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514718
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514718
    reference: chr 21
allele count: 2
allele frequency: 1.655053706492776e-5
allele num: 120842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1290-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1737-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.483-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*322-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4308-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.483-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.264-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.264-45G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.530-45G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

21-44514719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514719
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514719
    reference: chr 21
allele count: 4
allele frequency: 3.309504898067249e-5
allele num: 120864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+46C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+46C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8672
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

21-44514721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514721
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514721
    reference: chr 21
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+44G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+44G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

21-44514724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514724
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514724
    reference: chr 21
allele count: 6
allele frequency: 4.964257347100873e-5
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+41G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+41G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

21-44514725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514725
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514725
    reference: chr 21
allele count: 233
allele frequency: 1.927722805043519e-3
allele num: 120868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+40C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+40C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 24524
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 38757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

21-44514736-A-AGTCAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514736
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514741
    reference: chr 21
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: AGTCAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+24_263+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+24_1736+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+24_*321+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+24_263+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+24_482+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+24_482+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+24_529+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+24_1289+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+24_4307+28dupGTGAC
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24667
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

21-44514738-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514738
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514738
    reference: chr 21
allele count: 2
allele frequency: 1.654287084980728e-5
allele num: 120898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+27A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+27A>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

21-44514741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514741
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514741
    reference: chr 21
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+24G>A
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+24G>A
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

21-44514742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514742
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514742
    reference: chr 21
allele count: 18
allele frequency: 1.489055442497642e-4
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+23C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+23C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24671
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

21-44514748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514748
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514748
    reference: chr 21
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+17C>T
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+17C>T
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS

21-44514757-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514757
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514757
    reference: chr 21
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.529+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.482+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.263+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.482+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4307+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1289+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.263+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1736+8A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*321+8A>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: c.482+8A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

21-44514777-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44514777
    reference: chr 21
  end: Position
    type: ExactPosition
    position: 44514777
    reference: chr 21
allele count: 5
allele frequency: 4.131958217638503e-5
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000471250
  gene symbol: U2AF1
  hgvsc: ENST00000471250.1:n.1277A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000418705
  ensembl transcript: ENST00000459639
  gene symbol: U2AF1
  hgvsc: ENST00000459639.1:c.251A>G
  hgvsp: ENSP00000418705.1:p.Gln84Arg
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000369629
  ensembl transcript: ENST00000380276
  gene symbol: U2AF1
  hgvsc: ENST00000380276.2:c.470A>G
  hgvsp: ENSP00000369629.2:p.Gln157Arg
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000381205
  ensembl transcript: ENST00000398137
  gene symbol: U2AF1
  hgvsc: ENST00000398137.1:c.251A>G
  hgvsp: ENSP00000381205.1:p.Gln84Arg
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000486519
  gene symbol: U2AF1
  hgvsc: ENST00000486519.1:n.517A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000478282
  gene symbol: U2AF1
  hgvsc: ENST00000478282.1:n.1724A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160201
  ensembl transcript: ENST00000475639
  gene symbol: U2AF1
  hgvsc: ENST00000475639.1:n.4295A>G
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000291552
  ensembl transcript: ENST00000291552
  gene symbol: U2AF1
  hgvsc: ENST00000291552.4:c.470A>G
  hgvsp: ENSP00000291552.4:p.Gln157Arg
  variant of: http://identifiers.org/hgnc/12453
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160201
  ensembl protein: ENSP00000420672
  ensembl transcript: ENST00000464750
  gene symbol: U2AF1
  hgvsc: ENST00000464750.1:c.*309A>G
  variant of: http://identifiers.org/hgnc/12453
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln157Arg
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29980
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.2e1

DP
type: SiteQuality
SIO_000300: 2.943009e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.716e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.509592887225082e-4
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.157e1

FS
type: SiteQuality
SIO_000300: 1.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.468e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

DP
type: SiteQuality
SIO_000300: 2.93767e6

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537609939110646e-5
allele num: 65036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.788e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

FS
type: SiteQuality
SIO_000300: 2.062e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 2.924083e6

QD
type: SiteQuality
SIO_000300: 9.42e0

VQSLOD
type: SiteQuality
SIO_000300: -6.777e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 12

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.414730598121602e-4
allele num: 16184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 2.921716e6

FS
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.508e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538224888478696e-5
allele num: 65010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 1.508e1

DP
type: SiteQuality
SIO_000300: 2.921716e6

FS
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.918801e6

QD
type: SiteQuality
SIO_000300: 1.439e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.857355126300148e-4
allele num: 16152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 2.918801e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.483e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.523e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.086229245108326e-5
allele num: 64804
num of homozygotes: 0

Latino
type: Population
allele count: 0
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allele num: 11506
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 3.023e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543066999969139e-5
allele num: 64806
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.796e0

QD
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BaseQRankSum
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SIO_000300: 3.83e0

VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 890
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South Asian
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allele count: 1
allele frequency: 6.223549912870301e-5
allele num: 16068
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64784
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9738
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MQ
type: SiteQuality
SIO_000300: 5.61e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQRankSum
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SIO_000300: -3.226e0

VQSLOD
type: SiteQuality
SIO_000300: -6.602e-1

QD
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BaseQRankSum
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SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 1.311e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 2.900103e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545356204605162e-5
allele num: 64710
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16008
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8530
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VQSLOD
type: SiteQuality
SIO_000300: -1.038e0

FS
type: SiteQuality
SIO_000300: 2.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.043e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.491e0

BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.979e1

MQRankSum
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SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.893915e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

DP
type: SiteQuality
SIO_000300: 2.889469e6

ReadPosRankSum
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SIO_000300: 1.04e0

BaseQRankSum
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SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 5.059e1

FS
type: SiteQuality
SIO_000300: 6.166e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.109162702484221e-5
allele num: 64326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.537000000000001e0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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QD
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.35970490969219e-5
allele num: 15724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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Latino
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allele frequency: 0.0e0
allele num: 11502
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553953257086027e-5
allele num: 64352
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.041883725776203e-4
allele num: 9598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64274
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.557050323866467e-5
allele num: 64224
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558069240597052e-5
allele num: 64182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.868661e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 8.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.475e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.75e0

QD
type: SiteQuality
SIO_000300: 1.258e1

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
all individuals: 2130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3226
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variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64162
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.701e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 9.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.868364e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519202722411279e-5
allele num: 65824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.428e1

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 2.233e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.624e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65838
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.928514694201747e-5
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.630089e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

QD
type: SiteQuality
SIO_000300: 9.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeQuality
all individuals: 958
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2670
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 3154
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.096619530254294e-4
allele num: 65908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.028467595396729e-4
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.295e1

FS
type: SiteQuality
SIO_000300: 2.097e0

MQRankSum
type: SiteQuality
SIO_000300: -1.336e0

QD
type: SiteQuality
SIO_000300: 1.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 1.638341e6

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 718
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029568589432865e-5
allele num: 66016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

DP
type: SiteQuality
SIO_000300: 1.662449e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.711e1

VQSLOD
type: SiteQuality
SIO_000300: -4.861e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.451e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514096235956757e-5
allele num: 66046
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.223e1

DP
type: SiteQuality
SIO_000300: 1.667119e6

VQSLOD
type: SiteQuality
SIO_000300: -3.666e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.725e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

DP
type: SiteQuality
SIO_000300: 1.673758e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512172992590352e-5
allele num: 66130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.121e0

QD
type: SiteQuality
SIO_000300: 1.203e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.197e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

FS
type: SiteQuality
SIO_000300: 1.576e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.676798e6

GenotypeQuality
all individuals: 8645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

FS
type: SiteQuality
SIO_000300: 8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.208e0

QD
type: SiteQuality
SIO_000300: 1.551e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

DP
type: SiteQuality
SIO_000300: 1.681214e6

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.63821892393321e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 1.687186e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 1.315e1

FS
type: SiteQuality
SIO_000300: 4.738e0

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.571e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8670
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.424e1

QD
type: SiteQuality
SIO_000300: 9.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.866e0

DP
type: SiteQuality
SIO_000300: 1.68762e6

GenotypeQuality
all individuals: 38599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214771622934888e-4
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.112952398200972e-4
allele num: 66258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.689799e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.182e0

MQ
type: SiteQuality
SIO_000300: 5.773e1

QD
type: SiteQuality
SIO_000300: 1.288e1

VQSLOD
type: SiteQuality
SIO_000300: -1.229e0

FS
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.358080579447714e-4
allele num: 66270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214771622934888e-4
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.792e0

DP
type: SiteQuality
SIO_000300: 1.691012e6

QD
type: SiteQuality
SIO_000300: 1.327e1

MQ
type: SiteQuality
SIO_000300: 5.84e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2719
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 1.691012e6

QD
type: SiteQuality
SIO_000300: 1.327e1

FS
type: SiteQuality
SIO_000300: 1.792e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.84e1

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

QD
type: SiteQuality
SIO_000300: 1.327e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

DP
type: SiteQuality
SIO_000300: 1.691012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.692485e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.42e-1

FS
type: SiteQuality
SIO_000300: 5.098e0

QD
type: SiteQuality
SIO_000300: 1.055e1

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

MQ
type: SiteQuality
SIO_000300: 6.086e1

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.030635628995296e-5
allele num: 66328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.077e0

MQ
type: SiteQuality
SIO_000300: 5.757e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.619e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.314e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.64e-1

DP
type: SiteQuality
SIO_000300: 1.693034e6

QD
type: SiteQuality
SIO_000300: 9.81e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3109
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.03e0

QD
type: SiteQuality
SIO_000300: 1.18e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.332e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.711e0

MQ
type: SiteQuality
SIO_000300: 5.818e1

DP
type: SiteQuality
SIO_000300: 1.692346e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 84
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.924e0

DP
type: SiteQuality
SIO_000300: 1.690806e6

QD
type: SiteQuality
SIO_000300: 1.359e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.937e0

FS
type: SiteQuality
SIO_000300: 5.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.782e1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2643
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GenotypeQuality
all individuals: 2707
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.336e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.462e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.338e0

DP
type: SiteQuality
SIO_000300: 1.691222e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 743
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 905
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.690785e6

QD
type: SiteQuality
SIO_000300: 1.187e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

FS
type: SiteQuality
SIO_000300: 1.434e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -3.549e-1

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 312
allele frequency: 3.057025279247502e-2
allele num: 10206
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.511076188461422e-4
allele num: 66178
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.816608996539792e-3
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.97e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 5.88e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.699875e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50665943470138e-5
allele num: 66372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.700769e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

BaseQRankSum
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SIO_000300: -5.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQ
type: SiteQuality
SIO_000300: 5.55e1

QD
type: SiteQuality
SIO_000300: 1.438e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.831e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.70158e6

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.661e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2613
bin: 9.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.70158e6

MQ
type: SiteQuality
SIO_000300: 5.831e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.661e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.553398058252427e-3
allele num: 10300
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Other
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allele count: 0
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Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66338
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
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allele num: 6614
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African
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allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
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East Asian
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Other
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allele frequency: 1.106194690265487e-3
allele num: 904
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South Asian
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allele count: 0
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele frequency: 3.028834504482675e-4
allele num: 16508
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Other
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.784e1

DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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East Asian
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allele num: 8632
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South Asian
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Other
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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Other
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South Asian
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Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
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European (Finnish)
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InbreedingCoeff
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MQ
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DP
type: SiteQuality
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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Other
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European (Finnish)
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East Asian
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 7.536703747249104e-5
allele num: 66342
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VQSLOD
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.26066718386346e-3
allele num: 10312
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16508
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

East Asian
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DP
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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FS
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MQ
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QD
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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African
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South Asian
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East Asian
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QD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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FS
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DP
type: SiteQuality
SIO_000300: 1.699567e6

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

GenotypeQuality
all individuals: 8664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 1.141e0

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 1.699711e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.514e0

VQSLOD
type: SiteQuality
SIO_000300: -4.434e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.795085767269356e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.700177e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.939487975174554e-4
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 159
allele frequency: 2.396671791625215e-3
allele num: 66342
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.64331430548348e-3
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.325942350332594e-3
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 50
allele frequency: 7.559721802237677e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 1.709832e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
all individuals: 38987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8657
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.206e0

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: -4.583e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 5.684e0

MQ
type: SiteQuality
SIO_000300: 5.075e1

DP
type: SiteQuality
SIO_000300: 1.700685e6

GenotypeQuality
all individuals: 2570
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013954609843576e-5
allele num: 66358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

FS
type: SiteQuality
SIO_000300: 2.178e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.84e-1

DP
type: SiteQuality
SIO_000300: 1.700659e6

GenotypeQuality
all individuals: 2568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38862
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

FS
type: SiteQuality
SIO_000300: 3.904e0

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.56e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

DP
type: SiteQuality
SIO_000300: 1.700591e6

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.48073661255149e-4
allele num: 16508
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.028999487535044e-5
allele num: 66346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.43e-2

DP
type: SiteQuality
SIO_000300: 1.701377e6

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.196e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: -4.915e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.701321e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.56e-2

QD
type: SiteQuality
SIO_000300: 1.154e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.994e0

FS
type: SiteQuality
SIO_000300: 2.566e0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.894e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

DP
type: SiteQuality
SIO_000300: 1.701467e6

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0