X-83599319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599319
    reference: chr 0
allele count: 8
allele frequency: 9.16600785985174e-5
allele num: 87279
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1599A>G
  hgvsp: ENST00000373177.2:c.1599A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1425A>G
  hgvsp: ENST00000506585.2:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1599A>G
  hgvsp: ENST00000297977.5:c.1599A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20009
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val533Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-83599325-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599325
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599325
    reference: chr 0
allele count: 2
allele frequency: 2.29147571035747e-5
allele num: 87280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1419T>G
  hgvsp: ENST00000506585.2:c.1419T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1593T>G
  hgvsp: ENST00000373177.2:c.1593T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1593T>G
  hgvsp: ENST00000297977.5:c.1593T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1398
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  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49867
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro531Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-83599341-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599341
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599341
    reference: chr 0
allele count: 1
allele frequency: 1.146026725343235e-5
allele num: 87258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1403G>C
  hgvsp: ENSP00000423670.2:p.Gly468Ala
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1577G>C
  hgvsp: ENSP00000297977.5:p.Gly526Ala
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1577G>C
  hgvsp: ENSP00000362272.2:p.Gly526Ala
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly526Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

X-83599351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599351
    reference: chr 0
allele count: 1
allele frequency: 1.146486591839308e-5
allele num: 87223
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1567C>T
  hgvsp: ENSP00000297977.5:p.Leu523Phe
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1393C>T
  hgvsp: ENSP00000423670.2:p.Leu465Phe
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1567C>T
  hgvsp: ENSP00000362272.2:p.Leu523Phe
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1400
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu523Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-83599356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599356
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599356
    reference: chr 0
allele count: 1
allele frequency: 1.146828445932773e-5
allele num: 87197
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1388C>T
  hgvsp: ENSP00000423670.2:p.Ser463Phe
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1562C>T
  hgvsp: ENSP00000362272.2:p.Ser521Phe
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1562C>T
  hgvsp: ENSP00000297977.5:p.Ser521Phe
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser521Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-83599373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599373
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599373
    reference: chr 0
allele count: 1
allele frequency: 1.148013362875544e-5
allele num: 87107
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1545T>C
  hgvsp: ENST00000297977.5:c.1545T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1545T>C
  hgvsp: ENST00000373177.2:c.1545T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1371T>C
  hgvsp: ENST00000506585.2:c.1371T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
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genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31
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genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro515Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

X-83599373-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599373
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599373
    reference: chr 0
allele count: 23
allele frequency: 2.640430734613751e-4
allele num: 87107
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1371T>A
  hgvsp: ENST00000506585.2:c.1371T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1545T>A
  hgvsp: ENST00000373177.2:c.1545T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1545T>A
  hgvsp: ENST00000297977.5:c.1545T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 533
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 119
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1408
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro515Pro
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

X-83599374-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599374
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599374
    reference: chr 0
allele count: 1
allele frequency: 1.148066082683719e-5
allele num: 87103
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1370C>G
  hgvsp: ENSP00000423670.2:p.Pro457Arg
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1544C>G
  hgvsp: ENSP00000362272.2:p.Pro515Arg
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1544C>G
  hgvsp: ENSP00000297977.5:p.Pro515Arg
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
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genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 5973
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 119
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 877
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro515Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-83599400-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599400
    reference: chr 0
allele count: 2
allele frequency: 2.303749352070495e-5
allele num: 86815
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1518A>G
  hgvsp: ENST00000297977.5:c.1518A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1344A>G
  hgvsp: ENST00000506585.2:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1518A>G
  hgvsp: ENST00000373177.2:c.1518A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly506Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum

X-83599434-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599434
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599434
    reference: chr 0
allele count: 1
allele frequency: 1.170891633979275e-5
allele num: 85405
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1484G>T
  hgvsp: ENSP00000362272.2:p.Arg495Leu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1484G>T
  hgvsp: ENSP00000297977.5:p.Arg495Leu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1310G>T
  hgvsp: ENSP00000423670.2:p.Arg437Leu
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 116
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg495Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-83599448-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599448
    reference: chr 0
allele count: 1
allele frequency: 1.199141414747041e-5
allele num: 83393
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1470A>G
  hgvsp: ENST00000373177.2:c.1470A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1470A>G
  hgvsp: ENST00000297977.5:c.1470A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1296A>G
  hgvsp: ENST00000506585.2:c.1296A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23909
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg490Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

X-83599466-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599466
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599467
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 78319
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-2dupA
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1453-2dupA
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-2dupA
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: splice acceptor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1453-2dupA
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-83599473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599473
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599473
    reference: chr 0
allele count: 2
allele frequency: 2.652449537147556e-5
allele num: 75402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-8T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1453-8T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-8T>C
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1453-8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

X-83599482-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599482
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599482
    reference: chr 0
allele count: 1
allele frequency: 1.372683596431023e-5
allele num: 72850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-17A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1453-17A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-17A>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

X-83599502-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599502
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599502
    reference: chr 0
allele count: 2
allele frequency: 3.053155436143254e-5
allele num: 65506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-37T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-37T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1453-37T>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-83599512-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599512
    reference: chr 0
allele count: 1
allele frequency: 1.749444551354945e-5
allele num: 57161
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-47A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1453-47A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-47A>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

X-83599513-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599513
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083599513
    reference: chr 0
allele count: 1
allele frequency: 1.745718625072011e-5
allele num: 57283
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-48T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-48T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1453-48T>C
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16060
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
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site quality: InbreedingCoeff
site quality: DP
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X-83599517-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083599517
    reference: chr 0
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    type: ExactPosition
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    reference: chr 0
allele count: 16
allele frequency: 2.995918061641014e-4
allele num: 53406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1279-52C>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1453-52C>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
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population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
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X-83616436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616436
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 78755
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1452+38G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1278+38G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/26411
canonical: true
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
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X-83616443-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616443
    reference: chr 0
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    type: ExactPosition
    position: 24083616443
    reference: chr 0
allele count: 1
allele frequency: 1.262753813516517e-5
allele num: 79192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1278+31A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1452+31A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
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  ensembl gene: ENSG00000165259
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  variant of: http://identifiers.org/hgnc/26411
canonical: true
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population: African
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population: Other
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X-83616450-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616450
    reference: chr 0
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    type: ExactPosition
    position: 24083616450
    reference: chr 0
allele count: 1
allele frequency: 1.257102629858702e-5
allele num: 79548
alternate allele: G
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000423670
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  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1278+24A>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
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  gene symbol: HDX
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  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/26411
canonical: true
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

X-83616455-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616455
    reference: chr 0
allele count: 1
allele frequency: 1.252630524100611e-5
allele num: 79832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1278+19T>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1452+19T>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1452+19T>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 626
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

X-83616475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616475
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616475
    reference: chr 0
allele count: 1
allele frequency: 1.22469474483485e-5
allele num: 81653
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1451G>A
  hgvsp: ENSP00000297977.5:p.Arg484Gln
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1451G>A
  hgvsp: ENSP00000362272.2:p.Arg484Gln
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1277G>A
  hgvsp: ENSP00000423670.2:p.Arg426Gln
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15058
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg484Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-83616495-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616495
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616495
    reference: chr 0
allele count: 2
allele frequency: 2.435045170087905e-5
allele num: 82134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1257T>C
  hgvsp: ENST00000506585.2:c.1257T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1431T>C
  hgvsp: ENST00000373177.2:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1431T>C
  hgvsp: ENST00000297977.5:c.1431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4524
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  variant carriers: 0
hgvs: p.Asn477Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-83616501-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616501
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616501
    reference: chr 0
allele count: 1
allele frequency: 1.220792538516005e-5
allele num: 81914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1251A>T
  hgvsp: ENSP00000423670.2:p.Glu417Asp
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1425A>T
  hgvsp: ENSP00000297977.5:p.Glu475Asp
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1425A>T
  hgvsp: ENSP00000362272.2:p.Glu475Asp
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu475Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

X-83616510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616510
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616510
    reference: chr 0
allele count: 3
allele frequency: 3.692625826225029e-5
allele num: 81243
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1416G>A
  hgvsp: ENST00000373177.2:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1416G>A
  hgvsp: ENST00000297977.5:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1242G>A
  hgvsp: ENST00000506585.2:c.1242G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1169
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val472Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-83616514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616514
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616514
    reference: chr 0
allele count: 4
allele frequency: 4.943642475776152e-5
allele num: 80912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1412C>T
  hgvsp: ENSP00000362272.2:p.Ala471Val
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1412C>T
  hgvsp: ENSP00000297977.5:p.Ala471Val
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1238C>T
  hgvsp: ENSP00000423670.2:p.Ala413Val
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36729
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9443
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  variant carriers: 0
hgvs: p.Ala471Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-83616539-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616539
    reference: chr 0
allele count: 1
allele frequency: 1.280622894976116e-5
allele num: 78087
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1387T>A
  hgvsp: ENSP00000297977.5:p.Ser463Thr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1387T>A
  hgvsp: ENSP00000362272.2:p.Ser463Thr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1213T>A
  hgvsp: ENSP00000423670.2:p.Ser405Thr
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ser463Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-83616540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616540
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616540
    reference: chr 0
allele count: 73
allele frequency: 9.373635686586712e-4
allele num: 77878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1212C>T
  hgvsp: ENST00000506585.2:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1386C>T
  hgvsp: ENST00000373177.2:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1386C>T
  hgvsp: ENST00000297977.5:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly462Gly
num of homozygotes: 1
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

X-83616557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616557
    reference: chr 0
allele count: 1
allele frequency: 1.317957166392092e-5
allele num: 75875
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1369G>A
  hgvsp: ENSP00000362272.2:p.Gly457Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1195G>A
  hgvsp: ENSP00000423670.2:p.Gly399Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1369G>A
  hgvsp: ENSP00000297977.5:p.Gly457Ser
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly457Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-83616562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616562
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616562
    reference: chr 0
allele count: 3
allele frequency: 3.982582837723025e-5
allele num: 75328
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1364A>G
  hgvsp: ENSP00000297977.5:p.Asp455Gly
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1190A>G
  hgvsp: ENSP00000423670.2:p.Asp397Gly
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1364A>G
  hgvsp: ENSP00000362272.2:p.Asp455Gly
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13785
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18269
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3683
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28609
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Asp455Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

X-83616567-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616567
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616567
    reference: chr 0
allele count: 1
allele frequency: 1.338777695963585e-5
allele num: 74695
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1359T>C
  hgvsp: ENST00000297977.5:c.1359T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1359T>C
  hgvsp: ENST00000373177.2:c.1359T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1185T>C
  hgvsp: ENST00000506585.2:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3591
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
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  variant carriers: 0
hgvs: p.Tyr453Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

X-83616592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616592
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616592
    reference: chr 0
allele count: 1
allele frequency: 1.406192873414517e-5
allele num: 71114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1160G>A
  hgvsp: ENSP00000423670.2:p.Arg387Gln
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1334G>A
  hgvsp: ENSP00000362272.2:p.Arg445Gln
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1334G>A
  hgvsp: ENSP00000297977.5:p.Arg445Gln
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 101
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg445Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

X-83616594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616594
    reference: chr 0
allele count: 1
allele frequency: 1.413227812323346e-5
allele num: 70760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1158C>G
  hgvsp: ENSP00000423670.2:p.Asp386Glu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1332C>G
  hgvsp: ENSP00000297977.5:p.Asp444Glu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1332C>G
  hgvsp: ENSP00000362272.2:p.Asp444Glu
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 264
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp444Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

X-83616618-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616618
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616618
    reference: chr 0
allele count: 1
allele frequency: 1.707737759789607e-5
allele num: 58557
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1308A>G
  hgvsp: ENST00000373177.2:c.1308A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1134A>G
  hgvsp: ENST00000506585.2:c.1134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1308A>G
  hgvsp: ENST00000297977.5:c.1308A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1962
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1308A>G
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-83616619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616619
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616619
    reference: chr 0
allele count: 3
allele frequency: 5.184212345337665e-5
allele num: 57868
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1133T>C
  hgvsp: ENSP00000423670.2:p.Leu378Pro
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1307T>C
  hgvsp: ENSP00000362272.2:p.Leu436Pro
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1307T>C
  hgvsp: ENSP00000297977.5:p.Leu436Pro
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu436Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-83616629-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616629
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616629
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 50083
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-9G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-9G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-9G>T
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-83616631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616631
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616631
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 48475
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-11G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-11G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-11G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

X-83616641-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616641
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616641
    reference: chr 0
allele count: 1
allele frequency: 2.673439379762064e-5
allele num: 37405
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-21A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-21A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-21A>T
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-83616643-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616643
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616643
    reference: chr 0
allele count: 2
allele frequency: 5.351027397260274e-5
allele num: 37376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-23C>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-23C>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-23C>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-83616658-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616658
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616658
    reference: chr 0
allele count: 6
allele frequency: 2.217294900221729e-4
allele num: 27060
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-38C>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-38C>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-38C>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

X-83616664-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616664
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616664
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 23299
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-44T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-44T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-44T>C
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-83616668-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083616668
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083616668
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 20029
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1306-48T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1132-48T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1306-48T>C
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-83695500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695500
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695500
    reference: chr 0
allele count: 1
allele frequency: 1.280426125814671e-5
allele num: 78099
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1199C>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1305+40C>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1131+40C>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1305+40C>T
  variant of: http://identifiers.org/hgnc/26411
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

X-83695542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695542
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695542
    reference: chr 0
allele count: 1
allele frequency: 1.19799216513124e-5
allele num: 83473
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1303G>A
  hgvsp: ENSP00000362272.2:p.Ala435Thr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1303G>A
  hgvsp: ENSP00000297977.5:p.Ala435Thr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1129G>A
  hgvsp: ENSP00000423670.2:p.Ala377Thr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1157G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala435Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

X-83695556-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695556
    reference: chr 0
allele count: 1
allele frequency: 1.184665687343032e-5
allele num: 84412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1143G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1115G>T
  hgvsp: ENSP00000423670.2:p.Cys372Phe
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1289G>T
  hgvsp: ENSP00000362272.2:p.Cys430Phe
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1289G>T
  hgvsp: ENSP00000297977.5:p.Cys430Phe
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys430Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-83695556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695556
    reference: chr 0
allele count: 1
allele frequency: 1.184665687343032e-5
allele num: 84412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1143G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1289G>A
  hgvsp: ENSP00000362272.2:p.Cys430Tyr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1115G>A
  hgvsp: ENSP00000423670.2:p.Cys372Tyr
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1289G>A
  hgvsp: ENSP00000297977.5:p.Cys430Tyr
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys430Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-83695559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695559
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695559
    reference: chr 0
allele count: 1
allele frequency: 1.183263915183642e-5
allele num: 84512
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1286G>A
  hgvsp: ENSP00000297977.5:p.Gly429Glu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1112G>A
  hgvsp: ENSP00000423670.2:p.Gly371Glu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1140G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1286G>A
  hgvsp: ENSP00000362272.2:p.Gly429Glu
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 529
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  variant carriers: 0
hgvs: p.Gly429Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

X-83695586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695586
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695586
    reference: chr 0
allele count: 4
allele frequency: 4.773497541648766e-5
allele num: 83796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1085G>A
  hgvsp: ENSP00000423670.2:p.Gly362Glu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1113G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1259G>A
  hgvsp: ENSP00000362272.2:p.Gly420Glu
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1259G>A
  hgvsp: ENSP00000297977.5:p.Gly420Glu
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 751
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  variant carriers: 0
hgvs: p.Gly420Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-83695603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695603
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695603
    reference: chr 0
allele count: 1
allele frequency: 1.214830652607027e-5
allele num: 82316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1252-10G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1078-10G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1252-10G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1106-10G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-83695608-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695608
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695608
    reference: chr 0
allele count: 1
allele frequency: 1.220539234233684e-5
allele num: 81931
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1252-15T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1106-15T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1252-15T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1078-15T>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

X-83695615-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695615
    reference: chr 0
allele count: 1
allele frequency: 1.229165642361965e-5
allele num: 81356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1106-22A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1252-22A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1252-22A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1078-22A>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-83695616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695616
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695616
    reference: chr 0
allele count: 1
allele frequency: 1.232984809627145e-5
allele num: 81104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1078-23G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1106-23G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1252-23G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1252-23G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-83695630-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695630
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695630
    reference: chr 0
allele count: 1
allele frequency: 1.254311696456569e-5
allele num: 79725
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1106-37A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1252-37A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1252-37A>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1078-37A>T
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS

X-83695641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083695641
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083695641
    reference: chr 0
allele count: 18
allele frequency: 2.305859445056494e-4
allele num: 78062
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1252-48G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1106-48G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1078-48G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1252-48G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5623
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genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-83723432-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723432
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723432
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 14360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1077+48T>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1251+48T>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1251+48T>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1105+48T>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-83723436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723436
    reference: chr 0
allele count: 1
allele frequency: 6.919936336585703e-5
allele num: 14451
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1105+44T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1251+44T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1077+44T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1251+44T>C
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 493
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum

X-83723451-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723451
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723451
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15357
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1251+29T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1105+29T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1077+29T>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1251+29T>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-83723453-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723453
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723453
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15561
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1105+27G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1251+27G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1077+27G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1251+27G>T
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27036
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23936
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-83723454-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723454
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723454
    reference: chr 0
allele count: 2
allele frequency: 1.272102785905101e-4
allele num: 15722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1077+26G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1251+26G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1251+26G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1105+26G>T
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19361
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

X-83723458-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723458
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723457
    reference: chr 0
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1251+21delA
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1105+21delA
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1251+21delA
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1077+21delA
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: AT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

X-83723490-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723490
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723490
    reference: chr 0
allele count: 1
allele frequency: 2.639915522703273e-5
allele num: 37880
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1241A>G
  hgvsp: ENSP00000297977.5:p.Asn414Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1095A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1067A>G
  hgvsp: ENSP00000423670.2:p.Asn356Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1241A>G
  hgvsp: ENSP00000362272.2:p.Asn414Ser
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
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  variant carriers: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn414Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

X-83723495-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723495
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723495
    reference: chr 0
allele count: 1
allele frequency: 2.385837667605096e-5
allele num: 41914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1062C>G
  hgvsp: ENSP00000423670.2:p.Asn354Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1236C>G
  hgvsp: ENSP00000297977.5:p.Asn412Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1090C>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1236C>G
  hgvsp: ENSP00000362272.2:p.Asn412Lys
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15381
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 30980
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
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genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1169
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 29941
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 5430
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15337
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn412Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-83723501-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723501
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723501
    reference: chr 0
allele count: 1
allele frequency: 2.153965450394176e-5
allele num: 46426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1056A>G
  hgvsp: ENST00000506585.2:c.1056A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1230A>G
  hgvsp: ENST00000373177.2:c.1230A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1230A>G
  hgvsp: ENST00000297977.5:c.1230A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1084A>G
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17729
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 29678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 424
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 323
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genotype quality: GenotypeQuality
  all individuals: 17716
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser410Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-83723508-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723508
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723508
    reference: chr 0
allele count: 1
allele frequency: 1.955034213098729e-5
allele num: 51150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1077G>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1223G>T
  hgvsp: ENSP00000362272.2:p.Arg408Ile
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1049G>T
  hgvsp: ENSP00000423670.2:p.Arg350Ile
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1223G>T
  hgvsp: ENSP00000297977.5:p.Arg408Ile
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 83
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg408Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-83723508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723508
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723508
    reference: chr 0
allele count: 1
allele frequency: 1.955034213098729e-5
allele num: 51150
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1223G>A
  hgvsp: ENSP00000297977.5:p.Arg408Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1223G>A
  hgvsp: ENSP00000362272.2:p.Arg408Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1049G>A
  hgvsp: ENSP00000423670.2:p.Arg350Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1077G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20163
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg408Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

X-83723512-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723512
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723512
    reference: chr 0
allele count: 1
allele frequency: 1.84546108845295e-5
allele num: 54187
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1219T>C
  hgvsp: ENST00000373177.2:c.1219T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1073T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1045T>C
  hgvsp: ENST00000506585.2:c.1045T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1219T>C
  hgvsp: ENST00000297977.5:c.1219T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu407Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

X-83723541-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723541
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723541
    reference: chr 0
allele count: 12058
allele frequency: 1.661133229552687e-1
allele num: 72589
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1190T>C
  hgvsp: ENSP00000297977.5:p.Phe397Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1044T>C
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1016T>C
  hgvsp: ENSP00000423670.2:p.Phe339Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1190T>C
  hgvsp: ENSP00000362272.2:p.Phe397Ser
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 688
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 13155
  bin: 7.5e0
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.25e1
  variant carriers: 812
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 1.75e1
  variant carriers: 1519
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.75e1
  variant carriers: 1090
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.25e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 2.75e1
  variant carriers: 1329
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 1.25e1
  variant carriers: 877
genotype depth: GenotypeDepth
  all individuals: 26153
  bin: 2.25e1
  variant carriers: 1496
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 1081
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 7.25e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 13271
  bin: 2.25e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 310
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.5e0
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 2.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 26177
  bin: 6.25e1
  variant carriers: 430
genotype quality: GenotypeQuality
  all individuals: 8294
  bin: 9.75e1
  variant carriers: 7413
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 386
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.25e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 514
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.5e0
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.25e1
  variant carriers: 229
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.75e1
  variant carriers: 259
hgvs: p.Phe397Ser
num of homozygotes: 667
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-83723549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723549
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723549
    reference: chr 0
allele count: 1
allele frequency: 1.304257095158598e-5
allele num: 76672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1182G>A
  hgvsp: ENST00000373177.2:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1008G>A
  hgvsp: ENST00000506585.2:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1182G>A
  hgvsp: ENST00000297977.5:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1036G>A
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10708
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg394Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-83723550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723550
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723550
    reference: chr 0
allele count: 9
allele frequency: 1.166755253639628e-4
allele num: 77137
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1035G>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1181G>A
  hgvsp: ENSP00000362272.2:p.Arg394Gln
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1181G>A
  hgvsp: ENSP00000297977.5:p.Arg394Gln
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1007G>A
  hgvsp: ENSP00000423670.2:p.Arg336Gln
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg394Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-83723551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723551
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723551
    reference: chr 0
allele count: 3
allele frequency: 3.849361647526785e-5
allele num: 77935
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1006C>T
  hgvsp: ENSP00000423670.2:p.Arg336Trp
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1180C>T
  hgvsp: ENSP00000297977.5:p.Arg394Trp
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1034C>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1180C>T
  hgvsp: ENSP00000362272.2:p.Arg394Trp
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9632
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2904
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9547
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genotype quality: GenotypeQuality
  all individuals: 807
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 100
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genotype quality: GenotypeQuality
  all individuals: 247
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg394Trp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

X-83723557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723557
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723557
    reference: chr 0
allele count: 9
allele frequency: 1.11220958971824e-4
allele num: 80920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1174C>T
  hgvsp: ENSP00000362272.2:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1028C>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1174C>T
  hgvsp: ENSP00000297977.5:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.1000C>T
  hgvsp: ENSP00000423670.2:p.Pro334Ser
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34657
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6909
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 389
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41268
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro392Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-83723570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723570
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723570
    reference: chr 0
allele count: 5
allele frequency: 5.965946378073954e-5
allele num: 83809
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1161C>T
  hgvsp: ENST00000297977.5:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.987C>T
  hgvsp: ENST00000506585.2:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1161C>T
  hgvsp: ENST00000373177.2:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1015C>T
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 254
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  variant carriers: 0
hgvs: p.Tyr387Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

X-83723576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723576
    reference: chr 0
allele count: 1
allele frequency: 1.180623605388366e-5
allele num: 84701
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1155A>G
  hgvsp: ENST00000297977.5:c.1155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.981A>G
  hgvsp: ENST00000506585.2:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1009A>G
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1155A>G
  hgvsp: ENST00000373177.2:c.1155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr385Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

X-83723577-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723577
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723577
    reference: chr 0
allele count: 1
allele frequency: 1.179203565911583e-5
allele num: 84803
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1154C>A
  hgvsp: ENSP00000297977.5:p.Thr385Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.980C>A
  hgvsp: ENSP00000423670.2:p.Thr327Lys
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.1008C>A
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1154C>A
  hgvsp: ENSP00000362272.2:p.Thr385Lys
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr385Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-83723600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24083723600
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24083723600
    reference: chr 0
allele count: 2
allele frequency: 2.31602107579179e-5
allele num: 86355
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000362272
  ensembl transcript: ENST00000373177
  gene symbol: HDX
  hgvsc: ENST00000373177.2:c.1131C>T
  hgvsp: ENST00000373177.2:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000297977
  ensembl transcript: ENST00000297977
  gene symbol: HDX
  hgvsc: ENST00000297977.5:c.1131C>T
  hgvsp: ENST00000297977.5:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165259
  ensembl transcript: ENST00000472135
  gene symbol: HDX
  hgvsc: ENST00000472135.2:n.985C>T
  variant of: http://identifiers.org/hgnc/26411
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165259
  ensembl protein: ENSP00000423670
  ensembl transcript: ENST00000506585
  gene symbol: HDX
  hgvsc: ENST00000506585.2:c.957C>T
  hgvsp: ENST00000506585.2:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26411
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr377Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.673780232655452e-4
allele num: 47796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9151
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.647e1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 4.965e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.433e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 1.585901e6

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.183925358771599e-5
allele num: 47802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -1.204e0

FS
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 1.585607e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.917683229197659e-5
allele num: 10083
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4495
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-2

DP
type: SiteQuality
SIO_000300: 1.585453e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 3.37e1

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4493
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10073
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.093732910423275e-4
allele num: 9143
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47775
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

FS
type: SiteQuality
SIO_000300: 2.805e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

DP
type: SiteQuality
SIO_000300: 1.585301e6

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09375850589393e-5
allele num: 47761
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9139
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 8.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 1.585385e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.411e0

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.004e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.283e0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47715
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.951238929246691e-5
allele num: 10049
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9131
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

DP
type: SiteQuality
SIO_000300: 1.585667e6

FS
type: SiteQuality
SIO_000300: 1.107e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.288e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.64e1

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47715
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 3.331314354936402e-3
allele num: 6604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4487
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9131
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.951238929246691e-5
allele num: 10049
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.288e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.64e1

DP
type: SiteQuality
SIO_000300: 1.585667e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
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MQRankSum
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FS
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GenotypeQuality
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variant carriers: 0

Other
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European (Non-Finnish)
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East Asian
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African
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South Asian
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Latino
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allele frequency: 1.095290251916758e-4
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European (Finnish)
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num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQ
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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FS
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BaseQRankSum
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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Other
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MQ
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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VQSLOD
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DP
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.871988502107135e-5
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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South Asian
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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FS
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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FS
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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South Asian
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Other
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 3.315430011272462e-5
allele num: 30162
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South Asian
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European (Finnish)
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African
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Latino
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Other
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East Asian
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FS
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InbreedingCoeff
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DP
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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East Asian
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Other
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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South Asian
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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DP
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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Other
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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QD
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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African
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European (Finnish)
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Other
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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DP
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.280813794361828e-5
allele num: 43844
num of homozygotes: 0

MQ
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.199978000219998e-4
allele num: 9091
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East Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.563477173233271e-4
allele num: 6396
num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44041
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele count: 3
allele frequency: 3.323363243602525e-4
allele num: 9027
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 9.128043632048561e-5
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4006
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 8048
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European (Non-Finnish)
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allele frequency: 2.379309524376026e-5
allele num: 42029
num of homozygotes: 0

VQSLOD
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MQ
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DP
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InbreedingCoeff
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FS
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QD
type: SiteQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.093173891380169e-3
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Latino
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allele frequency: 0.0e0
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East Asian
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BaseQRankSum
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QD
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 40615
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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allele frequency: 5.023442732752846e-4
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Other
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ClippingRankSum
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QD
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FS
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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South Asian
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Other
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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QD
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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Other
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African
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East Asian
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FS
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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African
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Other
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South Asian
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MQ
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FS
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InbreedingCoeff
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QD
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DP
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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MQ
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FS
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QD
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 9.20143e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2929
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6674
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.30698766493601e-5
allele num: 30239
num of homozygotes: 0

Latino
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allele frequency: 3.114294612270321e-4
allele num: 6422
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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SIO_000300: 9.05399e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.07e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26088
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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QD
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5887
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5327
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5557
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2457
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25166
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 3707
num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4231
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1829
num of homozygotes: 0

East Asian
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allele frequency: 3.853564547206166e-4
allele num: 2595
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19083
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.627e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 6.03874e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1829
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2595
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19072
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4231
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 3.289473684210526e-3
allele num: 304
num of homozygotes: 0

South Asian
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allele frequency: 2.268602540834846e-4
allele num: 4408
num of homozygotes: 0

MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.394e-1

FS
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SIO_000300: 0.0e0

QD
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DP
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13727
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1471
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1301
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

African
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allele count: 6
allele frequency: 1.499625093726568e-3
allele num: 4001
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 2.139e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.69e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1093
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 215
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11817
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3037
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.698e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.04e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 4.64365e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3265
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 881
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2638
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1849
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 194
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VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.52703e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.51e-2

FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4139
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 575
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42143
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8523
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.675041876046901e-4
allele num: 5970
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8761
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DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.8454e1

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 8931
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.198381990854731e-5
allele num: 45488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 607
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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FS
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.199328376109379e-4
allele num: 8338
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 613
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4411
num of homozygotes: 0

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.545356204605162e-4
allele num: 6471
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Latino
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African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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Latino
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East Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
type: SiteQuality
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VQSLOD
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QD
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.67534e6

GenotypeQuality
all individuals: 1245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36648
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.350832123310622e-4
allele num: 8953
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.189046013747209e-5
allele num: 45682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.307e0

FS
type: SiteQuality
SIO_000300: 1.1171e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

DP
type: SiteQuality
SIO_000300: 1.646624e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.407e1

GenotypeQuality
all individuals: 949
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4403
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44819
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.21447656060238e-4
allele num: 8234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6339
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.817e0

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.571998e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.321e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.795e1

VQSLOD
type: SiteQuality
SIO_000300: -2.072e0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6317
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8825
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.242202739971748e-5
allele num: 44599
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8215
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.813e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 3.024e1

DP
type: SiteQuality
SIO_000300: 1.538972e6

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8793
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4275
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8969
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.220256253813301e-4
allele num: 8195
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44266
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.515e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

QD
type: SiteQuality
SIO_000300: 1.38e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.861e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.484937e6

GenotypeQuality
all individuals: 648
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4263
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.26577546165175e-5
allele num: 44135
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8181
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.849e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.471234e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.259e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.734e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 12402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4124
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8119
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6165
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8685
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.309148847734725e-5
allele num: 43306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.669e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 3.122e1

DP
type: SiteQuality
SIO_000300: 1.390002e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2561
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4100
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6017
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.798561151079137e-3
allele num: 8340
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.719541260589471e-5
allele num: 42377
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.156e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.68e-2

DP
type: SiteQuality
SIO_000300: 1.363813e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.261e0

FS
type: SiteQuality
SIO_000300: 2.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

QD
type: SiteQuality
SIO_000300: 2.192e1

GenotypeQuality
all individuals: 294
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8437
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 925
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 871
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2619
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 807
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.327e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

DP
type: SiteQuality
SIO_000300: 3.92719e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.17799505242078e-4
allele num: 8489
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 823
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 927
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 131
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.031e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.95e-1

FS
type: SiteQuality
SIO_000300: 3.998e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.09e-2

QD
type: SiteQuality
SIO_000300: 1.032e1

DP
type: SiteQuality
SIO_000300: 3.99532e5

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

GenotypeQuality
all individuals: 1426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8935
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1041
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2761
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.896e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 4.43877e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.44e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 907
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1059
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 979
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 4.53632e5

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

GenotypeQuality
all individuals: 1341
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.147962830593281e-4
allele num: 2798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 4.5915e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.31e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

FS
type: SiteQuality
SIO_000300: 7.334e0

QD
type: SiteQuality
SIO_000300: 1.797e1

GenotypeQuality
all individuals: 576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 695
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.857395925597874e-4
allele num: 1129
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

FS
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 8.17e0

MQ
type: SiteQuality
SIO_000300: 6.119e1

DP
type: SiteQuality
SIO_000300: 4.77513e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

GenotypeQuality
all individuals: 409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20211
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4157
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5415
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.472271914132379e-4
allele num: 2236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

FS
type: SiteQuality
SIO_000300: 3.163e0

VQSLOD
type: SiteQuality
SIO_000300: -6.707e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

DP
type: SiteQuality
SIO_000300: 7.5658e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 1.512e1

MQ
type: SiteQuality
SIO_000300: 5.904e1

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

GenotypeQuality
all individuals: 423
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3679
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2485
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.477077363896848e-5
allele num: 22336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
SIO_000300: -1.756e0

DP
type: SiteQuality
SIO_000300: 7.98078e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 2.067e1

GenotypeQuality
all individuals: 1366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2743
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.041710451863228e-5
allele num: 24742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2961
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 1.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 8.45871e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
all individuals: 472
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.243158366980709e-4
allele num: 4458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2985
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3417
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 9.528e0

DP
type: SiteQuality
SIO_000300: 8.9721e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

QD
type: SiteQuality
SIO_000300: 1.0e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1370
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2985
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.92654375182909e-4
allele num: 3417
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6551
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 9.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 8.9721e5

QD
type: SiteQuality
SIO_000300: 1.0e1

GenotypeQuality
all individuals: 1835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.479946721918011e-4
allele num: 6757
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29039
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 403
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.147e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 9.299e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.024e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 308
bin: 1.25e1
variant carriers: 106

GenotypeQuality
all individuals: 966
bin: 4.75e1
variant carriers: 468

GenotypeQuality
all individuals: 692
bin: 7.75e1
variant carriers: 248

GenotypeQuality
all individuals: 420
bin: 1.75e1
variant carriers: 130

African
type: Population
allele count: 211
allele frequency: 2.706863373957665e-2
allele num: 7795
num of homozygotes: 1

South Asian
type: Population
allele count: 820
allele frequency: 1.296852759765934e-1
allele num: 6323
num of homozygotes: 19

European (Non-Finnish)
type: Population
allele count: 8825
allele frequency: 2.218172678145029e-1
allele num: 39785
num of homozygotes: 533

East Asian
type: Population
allele count: 380
allele frequency: 6.36835930953578e-2
allele num: 5967
num of homozygotes: 7

Latino
type: Population
allele count: 623
allele frequency: 7.553346265761397e-2
allele num: 8248
num of homozygotes: 26

Other
type: Population
allele count: 116
allele frequency: 2.226487523992322e-1
allele num: 521
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 1083
allele frequency: 2.741772151898734e-1
allele num: 3950
num of homozygotes: 73

VQSLOD
type: SiteQuality
SIO_000300: 3.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.296e1

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.496e-1

DP
type: SiteQuality
SIO_000300: 1.466929e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

GenotypeQuality
all individuals: 3380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.370286093531489e-5
allele num: 42189
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7979
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4143
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 547
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 1.315532e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 2.891e1

GenotypeQuality
all individuals: 620
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.993134440144801e-4
allele num: 8011
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.710426529122212e-5
allele num: 42459
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.79539641943734e-4
allele num: 6256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7077
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.965e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

FS
type: SiteQuality
SIO_000300: 6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-2

DP
type: SiteQuality
SIO_000300: 1.325804e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8055
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8681
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.661678670489243e-5
allele num: 42903
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.587805652588123e-4
allele num: 6298
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.956e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

DP
type: SiteQuality
SIO_000300: 1.33981e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.085e0

QD
type: SiteQuality
SIO_000300: 2.305e1

GenotypeQuality
all individuals: 476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7949
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44484
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.09809663250366e-3
allele num: 8196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4337
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.472e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.49e-2

FS
type: SiteQuality
SIO_000300: 2.706e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

DP
type: SiteQuality
SIO_000300: 1.392569e6

VQSLOD
type: SiteQuality
SIO_000300: -7.140000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.091e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9097
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.086106525328004e-4
allele num: 46036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4427
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6543
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.669e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

FS
type: SiteQuality
SIO_000300: 7.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 1.448879e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

QD
type: SiteQuality
SIO_000300: 2.575e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.95e-1

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4123
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6561
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9145
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.150445142144424e-5
allele num: 46502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
type: SiteQuality
SIO_000300: 1.466361e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

QD
type: SiteQuality
SIO_000300: 1.709e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.147720195012994e-5
allele num: 46561
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9149
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 1.469267e6

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 2.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

GenotypeQuality
all individuals: 4362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6613
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.082465639316951e-4
allele num: 9604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47367
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1