http://identifiers.org/exac.variant/18-66364583-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66364583
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66364583
    reference: chr 18
allele count: 1
allele frequency: 1.462758176818208e-5
allele num: 68364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*177-43T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*177-43T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.493-43T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*158-43T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.412-43T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.493-43T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*177-43T>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7093
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

18-66364585-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66364585
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66364585
    reference: chr 18
allele count: 3
allele frequency: 4.500315022051544e-5
allele num: 66662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.412-45C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*177-45C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*177-45C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*177-45C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.493-45C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*158-45C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.493-45C>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17323
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-66365129-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365129
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365129
    reference: chr 18
allele count: 1
allele frequency: 1.0827197921178e-5
allele num: 92360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.159A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+40A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12921
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

18-66365129-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365129
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365129
    reference: chr 18
allele count: 16327
allele frequency: 1.767756604590732e-1
allele num: 92360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+40A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+40A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+40A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.159A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+40A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+40A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+40A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+40A>C
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 1.75e1
  variant carriers: 4264
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 449
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 18387
  bin: 1.25e1
  variant carriers: 4022
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.25e1
  variant carriers: 533
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 2.25e1
  variant carriers: 2555
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 12231
  bin: 7.5e0
  variant carriers: 1365
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 2.75e1
  variant carriers: 1234
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 2.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 6.75e1
  variant carriers: 179
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.25e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 6444
  bin: 3.25e1
  variant carriers: 250
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.5e0
  variant carriers: 34
num of homozygotes: 2314
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

18-66365135-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365135
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365135
    reference: chr 18
allele count: 1
allele frequency: 1.055743243243243e-5
allele num: 94720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+34T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+34T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+34T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.153T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+34T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+34T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+34T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+34T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15086
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16536
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/18-66365137-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365137
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365137
    reference: chr 18
allele count: 1
allele frequency: 1.050773369199731e-5
allele num: 95168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+32T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+32T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+32T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.151T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+32T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+32T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+32T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+32T>G
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

18-66365138-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365138
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365138
    reference: chr 18
allele count: 1
allele frequency: 1.045194197081818e-5
allele num: 95676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+31A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+31A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+31A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+31A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.150A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+31A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+31A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+31A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17957
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

18-66365144-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365144
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365144
    reference: chr 18
allele count: 2
allele frequency: 2.039484418339044e-5
allele num: 98064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.144A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+25A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+25A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+25A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+25A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+25A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+25A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+25A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23904
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

18-66365145-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365145
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365145
    reference: chr 18
allele count: 1
allele frequency: 1.015269655620533e-5
allele num: 98496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.143A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+24A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+24A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+24A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+24A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+24A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+24A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+24A>C
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-66365151-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365151
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365150
    reference: chr 18
allele count: 1
allele frequency: 9.719495363800712e-6
allele num: 102886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+17delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.136delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+17delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+17delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+17delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+17delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+17delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+17delA
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

18-66365152-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365152
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365152
    reference: chr 18
allele count: 1
allele frequency: 9.643945530995641e-6
allele num: 103692
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+17A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+17A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+17A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+17A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+17A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+17A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.136A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+17A>T
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

18-66365153-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365153
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365152
    reference: chr 18
allele count: 23
allele frequency: 2.239314575017038e-4
allele num: 102710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+15delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+15delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+15delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+15delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.134delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+15delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+15delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+15delT
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30277
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8197
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: TA
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

18-66365153-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365153
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365151
    reference: chr 18
allele count: 1
allele frequency: 9.736150326161036e-6
allele num: 102710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+14_*176+15delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.133_134delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+14_411+15delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+14_492+15delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+14_492+15delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+14_*176+15delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+14_*176+15delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+14_*157+15delTT
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 30277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TAA
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/18-66365155-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365155
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365155
    reference: chr 18
allele count: 2
allele frequency: 1.88800362496696e-5
allele num: 105932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+14T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+14T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+14T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+14T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+14T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+14T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.133T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+14T>G
  variant of: http://identifiers.org/hgnc/24718
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

18-66365161-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365161
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365161
    reference: chr 18
allele count: 1
allele frequency: 9.001062125330788e-6
allele num: 111098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+8T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+8T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+8T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.127T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+8T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+8T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+8T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+8T>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35990
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: c.492+8T>A
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

18-66365166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365166
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365166
    reference: chr 18
allele count: 1
allele frequency: 8.782869890565442e-6
allele num: 113858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.411+3A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*176+3A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*157+3A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.492+3A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.492+3A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*176+3A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.122A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*176+3A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: c.492+3A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

18-66365174-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365174
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365174
    reference: chr 18
allele count: 1
allele frequency: 8.498053945646446e-6
allele num: 117674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*152T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.406T>C
  hgvsp: ENST00000443099.2:c.406T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.487T>C
  hgvsp: ENST00000562706.1:c.487T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*171T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*171T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.114T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.487T>C
  hgvsp: ENST00000299608.2:c.487T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*171T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*171T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu163Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

18-66365198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365198
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365198
    reference: chr 18
allele count: 2
allele frequency: 1.667278001934042e-5
allele num: 119956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*128G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*147G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*147G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.463G>A
  hgvsp: ENSP00000457262.1:p.Val155Ile
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*147G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.90G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.382G>A
  hgvsp: ENSP00000402605.2:p.Val128Ile
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.463G>A
  hgvsp: ENSP00000299608.2:p.Val155Ile
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*147G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val155Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

18-66365199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365199
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365199
    reference: chr 18
allele count: 7
allele frequency: 5.831583858175881e-5
allele num: 120036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.462C>T
  hgvsp: ENST00000562706.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.381C>T
  hgvsp: ENST00000443099.2:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.89C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.462C>T
  hgvsp: ENST00000299608.2:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*127C>T
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe154Phe
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

18-66365209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365209
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365209
    reference: chr 18
allele count: 3
allele frequency: 2.493931433511788e-5
allele num: 120292
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.452G>A
  hgvsp: ENSP00000299608.2:p.Arg151His
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.371G>A
  hgvsp: ENSP00000402605.2:p.Arg124His
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*136G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*136G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*117G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*136G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.452G>A
  hgvsp: ENSP00000457262.1:p.Arg151His
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.79G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*136G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg151His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

18-66365211-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365211
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365212
    reference: chr 18
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.449dupA
  hgvsp: ENSP00000457262.1:p.His150GlnfsTer41
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*133dupA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*114dupA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*133dupA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*133dupA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.449dupA
  hgvsp: ENSP00000299608.2:p.His150GlnfsTer41
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*133dupA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.368dupA
  hgvsp: ENSP00000402605.2:p.His123GlnfsTer41
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.76dupA
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His150GlnfsTer41
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-66365212-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365212
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365212
    reference: chr 18
allele count: 1
allele frequency: 8.311722853913159e-6
allele num: 120312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.449A>G
  hgvsp: ENSP00000457262.1:p.His150Arg
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*114A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.368A>G
  hgvsp: ENSP00000402605.2:p.His123Arg
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.76A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.449A>G
  hgvsp: ENSP00000299608.2:p.His150Arg
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His150Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

18-66365224-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365224
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365224
    reference: chr 18
allele count: 2
allele frequency: 1.662040653514385e-5
allele num: 120334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.64T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.437T>C
  hgvsp: ENSP00000457262.1:p.Met146Thr
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.437T>C
  hgvsp: ENSP00000299608.2:p.Met146Thr
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.356T>C
  hgvsp: ENSP00000402605.2:p.Met119Thr
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*102T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met146Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

18-66365238-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365238
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365238
    reference: chr 18
allele count: 1
allele frequency: 8.327504080476999e-6
allele num: 120084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*107A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*107A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.342A>C
  hgvsp: ENSP00000402605.2:p.Gln114His
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*107A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.423A>C
  hgvsp: ENSP00000299608.2:p.Gln141His
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.423A>C
  hgvsp: ENSP00000457262.1:p.Gln141His
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*88A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*107A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.50A>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln141His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

18-66365242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365242
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365242
    reference: chr 18
allele count: 2
allele frequency: 1.666472244904761e-5
allele num: 120014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.338A>G
  hgvsp: ENSP00000402605.2:p.Gln113Arg
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*84A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.46A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.419A>G
  hgvsp: ENSP00000457262.1:p.Gln140Arg
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.419A>G
  hgvsp: ENSP00000299608.2:p.Gln140Arg
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln140Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

18-66365246-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365246
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365246
    reference: chr 18
allele count: 1
allele frequency: 8.344737808338063e-6
allele num: 119836
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.415A>G
  hgvsp: ENSP00000299608.2:p.Ser139Gly
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.334A>G
  hgvsp: ENSP00000402605.2:p.Ser112Gly
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*80A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.415A>G
  hgvsp: ENSP00000457262.1:p.Ser139Gly
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.42A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser139Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

18-66365249-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365249
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365249
    reference: chr 18
allele count: 1
allele frequency: 8.357989402069439e-6
allele num: 119646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*96C>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*77C>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.39C>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.331C>G
  hgvsp: ENSP00000402605.2:p.Pro111Ala
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*96C>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*96C>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*96C>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.412C>G
  hgvsp: ENSP00000299608.2:p.Pro138Ala
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.412C>G
  hgvsp: ENSP00000457262.1:p.Pro138Ala
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro138Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

18-66365259-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365259
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365259
    reference: chr 18
allele count: 1
allele frequency: 8.395318770253707e-6
allele num: 119114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.29T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.402T>A
  hgvsp: ENST00000299608.2:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*67T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*86T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.321T>A
  hgvsp: ENST00000443099.2:c.321T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.402T>A
  hgvsp: ENST00000562706.1:c.402T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*86T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*86T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*86T>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile134Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

18-66365260-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365260
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365260
    reference: chr 18
allele count: 1
allele frequency: 8.402090440101497e-6
allele num: 119018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*85T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*85T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*85T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.320T>A
  hgvsp: ENSP00000402605.2:p.Ile107Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.401T>A
  hgvsp: ENSP00000299608.2:p.Ile134Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.28T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*85T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.401T>A
  hgvsp: ENSP00000457262.1:p.Ile134Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*66T>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile134Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

18-66365261-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365261
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365261
    reference: chr 18
allele count: 1
allele frequency: 8.411985396793351e-6
allele num: 118878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.400A>T
  hgvsp: ENSP00000457262.1:p.Ile134Phe
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.400A>T
  hgvsp: ENSP00000299608.2:p.Ile134Phe
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*84A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.319A>T
  hgvsp: ENSP00000402605.2:p.Ile107Phe
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*65A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*84A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*84A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*84A>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.27A>T
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile134Phe
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

18-66365268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365268
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365268
    reference: chr 18
allele count: 1
allele frequency: 8.496609852668785e-6
allele num: 117694
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393G>A
  hgvsp: ENST00000299608.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393G>A
  hgvsp: ENST00000562706.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312G>A
  hgvsp: ENST00000443099.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37067
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 2.25e1
  variant carriers: 0
hgvs: c.393G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

18-66365271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365271
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365271
    reference: chr 18
allele count: 1
allele frequency: 8.552856654122476e-6
allele num: 116920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-3C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-3C>T
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: c.393-3C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

18-66365271-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365271
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365270
    reference: chr 18
allele count: 1
allele frequency: 8.552856654122476e-6
allele num: 116920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-4delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-4delA
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
hgvs: c.393-4delA
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: GT
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

18-66365274-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365274
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365274
    reference: chr 18
allele count: 5
allele frequency: 4.311534216335541e-5
allele num: 115968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-6C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-6C>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34233
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
hgvs: c.393-6C>A
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/18-66365275-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365275
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365275
    reference: chr 18
allele count: 1
allele frequency: 8.703220191470844e-6
allele num: 114900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-7G>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-7G>T
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
hgvs: c.393-7G>T
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

18-66365276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365276
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365276
    reference: chr 18
allele count: 1
allele frequency: 8.719308035714285e-6
allele num: 114688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-8T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-8T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
hgvs: c.393-8T>C
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

18-66365280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365280
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365280
    reference: chr 18
allele count: 1
allele frequency: 8.777473492030055e-6
allele num: 113928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-12G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-12G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-66365291-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365291
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365291
    reference: chr 18
allele count: 1
allele frequency: 9.114773224442176e-6
allele num: 109712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-23T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-23T>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18244
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

18-66365291-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365291
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365291
    reference: chr 18
allele count: 1
allele frequency: 9.114773224442176e-6
allele num: 109712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-23T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-23T>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-66365294-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365294
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365294
    reference: chr 18
allele count: 1
allele frequency: 9.225602893149067e-6
allele num: 108394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-26T>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-26T>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

18-66365299-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365299
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365299
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 105998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-31C>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-31C>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

18-66365303-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365303
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365303
    reference: chr 18
allele count: 2
allele frequency: 1.935096851597422e-5
allele num: 103354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-35A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-35A>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21055
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

18-66365304-ATAAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365304
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365299
    reference: chr 18
allele count: 5
allele frequency: 4.867790801822501e-5
allele num: 102716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-41_*77-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-41_312-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-41_*77-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-41_393-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-41_393-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-41_*77-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-41_*58-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-41_*77-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-41_20-37delGTTTA
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23036
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10311
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: ATAAAC
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

18-66365305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66365305
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66365305
    reference: chr 18
allele count: 1
allele frequency: 1.009000282520079e-5
allele num: 99108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*77-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.393-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*77-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.312-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.20-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*77-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*77-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*58-37A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.393-37A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5348
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

18-66367602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367602
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367602
    reference: chr 18
allele count: 1
allele frequency: 8.427439743805831e-6
allele num: 118660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1380A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+40A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+40A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

18-66367605-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367605
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367605
    reference: chr 18
allele count: 2
allele frequency: 1.672968180145214e-5
allele num: 119548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1377A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+37A>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+37A>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

18-66367607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367607
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367607
    reference: chr 18
allele count: 21199
allele frequency: 1.764319123791135e-1
allele num: 120154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1375T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+35T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+35T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.75e1
  variant carriers: 1248
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.25e1
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 2.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.25e1
  variant carriers: 900
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 5.75e1
  variant carriers: 1313
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 8.25e1
  variant carriers: 1149
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 7.25e1
  variant carriers: 1354
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 9.75e1
  variant carriers: 4010
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.75e1
  variant carriers: 704
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.25e1
  variant carriers: 865
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 6.25e1
  variant carriers: 1447
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 6.75e1
  variant carriers: 1453
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 4.75e1
  variant carriers: 1145
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 5.25e1
  variant carriers: 1227
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.75e1
  variant carriers: 320
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.25e1
  variant carriers: 10
num of homozygotes: 2212
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-66367608-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367608
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367608
    reference: chr 18
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+34A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1374A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+34A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28988
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

18-66367611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367611
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367611
    reference: chr 18
allele count: 2
allele frequency: 1.658814942605003e-5
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+31G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1371G>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28991
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

18-66367612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367612
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367612
    reference: chr 18
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1370T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+30T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+30T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3427
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

18-66367616-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367616
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367616
    reference: chr 18
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+26T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1366T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+26T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

18-66367624-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367624
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367624
    reference: chr 18
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1358G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+18G>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+18G>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

18-66367625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367625
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367625
    reference: chr 18
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*57+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.392+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.19+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*76+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*76+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*76+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.392+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*76+17G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1357G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

18-66367647-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367647
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367647
    reference: chr 18
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.387A>G
  hgvsp: ENST00000299608.2:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1335A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*52A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.387A>G
  hgvsp: ENST00000562706.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166479
  ensembl transcript: ENST00000580785
  gene symbol: TMX3
  hgvsc: ENST00000580785.1:n.14A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val129Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

18-66367669-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367669
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367669
    reference: chr 18
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*30T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.365T>A
  hgvsp: ENSP00000299608.2:p.Ile122Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.365T>A
  hgvsp: ENSP00000457262.1:p.Ile122Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1313T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile122Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-66367670-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367670
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367670
    reference: chr 18
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1312A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.364A>G
  hgvsp: ENSP00000457262.1:p.Ile122Val
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.364A>G
  hgvsp: ENSP00000299608.2:p.Ile122Val
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28984
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile122Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

18-66367685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367685
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367685
    reference: chr 18
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.349C>T
  hgvsp: ENSP00000457262.1:p.Arg117Ter
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.349C>T
  hgvsp: ENSP00000299608.2:p.Arg117Ter
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1297C>T
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg117Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

18-66367686-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367686
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367686
    reference: chr 18
allele count: 2
allele frequency: 1.649974425396406e-5
allele num: 121214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1296A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.348A>G
  hgvsp: ENST00000299608.2:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.348A>G
  hgvsp: ENST00000562706.1:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*13A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro116Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

18-66367694-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367694
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367694
    reference: chr 18
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1288A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*24A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.340A>G
  hgvsp: ENSP00000299608.2:p.Arg114Gly
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*24A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*24A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.340A>G
  hgvsp: ENSP00000457262.1:p.Arg114Gly
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*24A>G
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.*5A>G
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg114Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

18-66367712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367712
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367712
    reference: chr 18
allele count: 3
allele frequency: 2.476718842876956e-5
allele num: 121128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.374G>A
  hgvsp: ENSP00000455234.1:p.Gly125Glu
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1270G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.322G>A
  hgvsp: ENSP00000457262.1:p.Asp108Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.322G>A
  hgvsp: ENSP00000299608.2:p.Asp108Asn
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp108Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

18-66367726-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367726
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367725
    reference: chr 18
allele count: 25649
allele frequency: 2.925696947574942e-1
allele num: 87668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-5delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-5delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1255delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-5delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-5delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-5delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-5delT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-5delT
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 3554
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 1459
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 5.25e1
  variant carriers: 3197
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 4.75e1
  variant carriers: 3410
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.25e1
  variant carriers: 2853
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 3322
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 1075
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 8.25e1
  variant carriers: 422
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 1027
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 718
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 1564
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 5.75e1
  variant carriers: 2706
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.25e1
  variant carriers: 2053
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 2229
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 676
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 1365
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 5.25e1
  variant carriers: 1274
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 5.75e1
  variant carriers: 1220
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 998
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 1.25e1
  variant carriers: 1387
hgvs: c.312-5delT
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: TA
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

18-66367726-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367726
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367727
    reference: chr 18
allele count: 8484
allele frequency: 9.677419354838709e-2
allele num: 87668
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-5dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-5dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-5dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1255dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-5dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-5dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-5dupT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-5dupT
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 4.75e1
  variant carriers: 1080
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.25e1
  variant carriers: 1386
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 980
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 1231
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 1365
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 596
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.25e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 5.75e1
  variant carriers: 637
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 8.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 1186
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 5.25e1
  variant carriers: 843
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 488
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 752
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 3.25e1
  variant carriers: 588
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 5.75e1
  variant carriers: 299
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 204
hgvs: c.312-5dupT
num of homozygotes: 5
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

18-66367726-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367726
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367728
    reference: chr 18
allele count: 26
allele frequency: 2.965734361454579e-4
allele num: 87668
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-6_312-5dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-6_266-5dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-6_364-5dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-6_312-5dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1254_311+1255dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-6_188-5dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-6_206-5dupTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-6_266-5dupTT
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 7.5e0
  variant carriers: 8
hgvs: c.312-6_312-5dupTT
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

18-66367726-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367726
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367724
    reference: chr 18
allele count: 33
allele frequency: 3.764201304923119e-4
allele num: 87668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-6_266-5delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-6_312-5delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1254_311+1255delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-6_188-5delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-6_206-5delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-6_266-5delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-6_312-5delTT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-6_364-5delTT
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 3.25e1
  variant carriers: 4
hgvs: c.312-6_312-5delTT
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: TAA
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

18-66367726-TAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367726
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367723
    reference: chr 18
allele count: 1
allele frequency: 1.140667062097915e-5
allele num: 87668
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11768
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6060
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4580
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11878
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.05862977602108e-5
  allele num: 48576
  num of homozygotes: 0
population: Latino
population: African
population: Other
reference allele: TAAA
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

18-66367748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367748
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367748
    reference: chr 18
allele count: 1
allele frequency: 8.67874748316323e-6
allele num: 115224
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-26G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-26G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-26G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-26G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-26G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-26G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1234G>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-26G>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7347
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/18-66367761-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367761
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367759
    reference: chr 18
allele count: 2
allele frequency: 1.793432450366757e-5
allele num: 111518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-41_364-40delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-41_312-40delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-41_206-40delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1219_311+1220delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-41_266-40delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-41_266-40delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-41_188-40delGT
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-41_312-40delGT
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11658
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7587
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: AAC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-66367764-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367764
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367764
    reference: chr 18
allele count: 1
allele frequency: 9.031791907514451e-6
allele num: 110720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-42T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-42T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-42T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-42T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1218T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-42T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-42T>A
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-42T>A
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10776
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

18-66367771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367771
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367771
    reference: chr 18
allele count: 1
allele frequency: 9.347017366758268e-6
allele num: 106986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-49T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-49T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-49T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1211T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-49T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-49T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-49T>C
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-49T>C
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

18-66367773-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66367773
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 66367772
    reference: chr 18
allele count: 1
allele frequency: 9.526894422956004e-6
allele num: 104966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000458132
  ensembl transcript: ENST00000569053
  gene symbol: TMX3
  hgvsc: ENST00000569053.1:c.266-52delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457262
  ensembl transcript: ENST00000562706
  gene symbol: TMX3
  hgvsc: ENST00000562706.1:c.312-52delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000402605
  ensembl transcript: ENST00000443099
  gene symbol: TMX3
  hgvsc: ENST00000443099.2:c.311+1208delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456453
  ensembl transcript: ENST00000564008
  gene symbol: TMX3
  hgvsc: ENST00000564008.1:c.188-52delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000455234
  ensembl transcript: ENST00000565918
  gene symbol: TMX3
  hgvsc: ENST00000565918.1:c.364-52delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000299608
  ensembl transcript: ENST00000299608
  gene symbol: TMX3
  hgvsc: ENST00000299608.2:c.312-52delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000457074
  ensembl transcript: ENST00000569982
  gene symbol: TMX3
  hgvsc: ENST00000569982.1:c.206-52delA
  variant of: http://identifiers.org/hgnc/24718
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166479
  ensembl protein: ENSP00000456587
  ensembl transcript: ENST00000564631
  gene symbol: TMX3
  hgvsc: ENST00000564631.1:c.266-52delA
  variant of: http://identifiers.org/hgnc/24718
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: AT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

18-66367774-T-C
type: Variant
location: Region
allele count: 1
allele frequency: 9.529073202340341e-6
allele num: 104942
alternate allele: C
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 3944
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4684
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.690331304935767e-4
allele num: 5916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.13e0

DP
type: SiteQuality
SIO_000300: 7.38055e5

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 595
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.444654325651681e-5
allele num: 31764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.332e5

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

QD
type: SiteQuality
SIO_000300: 1.436e1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8777
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GenotypeQuality
all individuals: 934
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.090825457890775e-5
allele num: 47828
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e0

DP
type: SiteQuality
SIO_000300: 1.063538e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.565e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

QD
type: SiteQuality
SIO_000300: 2.12e1

GenotypeQuality
all individuals: 1072
bin: 7.5e0
variant carriers: 59

GenotypeQuality
all individuals: 5130
bin: 3.75e1
variant carriers: 306

GenotypeQuality
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bin: 5.75e1
variant carriers: 194

GenotypeQuality
all individuals: 934
bin: 5.25e1
variant carriers: 331

GenotypeQuality
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variant carriers: 201

GenotypeQuality
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bin: 2.25e1
variant carriers: 152

GenotypeQuality
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variant carriers: 160

GenotypeQuality
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variant carriers: 225

GenotypeQuality
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bin: 7.75e1
variant carriers: 220

GenotypeQuality
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variant carriers: 59

GenotypeQuality
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bin: 4.25e1
variant carriers: 182

GenotypeQuality
all individuals: 2330
bin: 4.75e1
variant carriers: 360

GenotypeQuality
all individuals: 12921
bin: 9.75e1
variant carriers: 11947

Latino
type: Population
allele count: 2156
allele frequency: 2.290692732681683e-1
allele num: 9412
num of homozygotes: 217

European (Finnish)
type: Population
allele count: 777
allele frequency: 1.362679761487197e-1
allele num: 5702
num of homozygotes: 53

African
type: Population
allele count: 5420
allele frequency: 6.088519433835093e-1
allele num: 8902
num of homozygotes: 1619

Other
type: Population
allele count: 109
allele frequency: 1.480978260869565e-1
allele num: 736
num of homozygotes: 14

East Asian
type: Population
allele count: 1271
allele frequency: 1.988423028785982e-1
allele num: 6392
num of homozygotes: 100

South Asian
type: Population
allele count: 838
allele frequency: 6.259336719450254e-2
allele num: 13388
num of homozygotes: 25

European (Non-Finnish)
type: Population
allele count: 5756
allele frequency: 1.20347913356193e-1
allele num: 47828
num of homozygotes: 286

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 2.12e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.565e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 1.063538e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 256
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GenotypeQuality
all individuals: 2280
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 616
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variant carriers: 0

GenotypeQuality
all individuals: 687
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variant carriers: 0

GenotypeQuality
all individuals: 12194
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.03533338760889e-5
allele num: 49132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

DP
type: SiteQuality
SIO_000300: 1.06109e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 4.77e0

GenotypeQuality
all individuals: 672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 136
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 253
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GenotypeQuality
all individuals: 1953
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GenotypeQuality
all individuals: 1518
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GenotypeQuality
all individuals: 2361
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1005
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variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.098418277680141e-4
allele num: 9104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.082246e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
SIO_000300: 1.806e1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 704
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variant carriers: 0

GenotypeQuality
all individuals: 19251
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.316359379572725e-5
allele num: 13668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

DP
type: SiteQuality
SIO_000300: 1.089977e6

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.440507058484587e-4
allele num: 13884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.724e0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.156053e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 692
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GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.937233630375823e-5
allele num: 51620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.857e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.453e0

DP
type: SiteQuality
SIO_000300: 1.16748e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 2498
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 39
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1922
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 1521
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GenotypeQuality
all individuals: 803
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variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.834458467860288e-5
allele num: 54512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.251382e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

FS
type: SiteQuality
SIO_000300: 2.207e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

GenotypeQuality
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.547450830628223e-5
allele num: 10474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 5.506e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.264488e6

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.353546291283162e-4
allele num: 7388
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.07828337287039e-4
allele num: 9274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.408847562693716e-4
allele num: 14196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.115949998167088e-4
allele num: 54558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.304338e6

FS
type: SiteQuality
SIO_000300: 1.921e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

QD
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: -4.828e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

GenotypeQuality
all individuals: 928
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.07828337287039e-4
allele num: 9274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.828e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

QD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 1.921e0

DP
type: SiteQuality
SIO_000300: 1.304338e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1961
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
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GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2487
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 593
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GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.766222756013989e-5
allele num: 56618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.057529610829103e-4
allele num: 9456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.328031e6

QD
type: SiteQuality
SIO_000300: 1.589e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 1430
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variant carriers: 0

GenotypeQuality
all individuals: 450
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42408
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variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.029230135858378e-4
allele num: 9716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.532e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

FS
type: SiteQuality
SIO_000300: 1.263e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.419e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.376757e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 866
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.42756138321121e-5
allele num: 15558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61808
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.014e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

DP
type: SiteQuality
SIO_000300: 1.412502e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48932
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554049853919314e-5
allele num: 64348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.4596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.038867110341265e-5
allele num: 65814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.57e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.491634e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.062860613422411e-4
allele num: 65860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 2.636e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.493247e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.540913631822723e-5
allele num: 66066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.496702e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 1.841e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
SIO_000300: 1.045e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.497068e6

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.637e1

FS
type: SiteQuality
SIO_000300: 2.399e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.496978e6

VQSLOD
type: SiteQuality
SIO_000300: -1.936e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.671e0

FS
type: SiteQuality
SIO_000300: 7.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 5.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4421
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GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512584704743466e-5
allele num: 66112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 9.92e-1

QD
type: SiteQuality
SIO_000300: 9.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.497628e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516162290011523e-5
allele num: 65956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

DP
type: SiteQuality
SIO_000300: 1.494266e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 2.731e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340823970037453e-4
allele num: 8544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

DP
type: SiteQuality
SIO_000300: 1.493566e6

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

FS
type: SiteQuality
SIO_000300: 1.678e0

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519895431194334e-5
allele num: 65794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.491455e6

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.761e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 880
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 83
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.176470588235294e-4
allele num: 8500
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Other
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BaseQRankSum
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SIO_000300: -4.191e0

MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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DP
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65292
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16252
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MQ
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FS
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.157635467980295e-5
allele num: 16240
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.94e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.47866e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.824e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10012
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.9e-2

VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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FS
type: SiteQuality
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 63890
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.994423457456377e-5
allele num: 11118
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15846
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62584
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
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VQSLOD
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FS
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-3

DP
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SIO_000300: 1.390171e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.142e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.025010250102501e-4
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62464
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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FS
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.0315659170621e-4
allele num: 9694
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61932
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Other
type: Population
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e0

ReadPosRankSum
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SIO_000300: -1.806e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10802
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.687251130458257e-5
allele num: 59268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.207274e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.589319771137953e-4
allele num: 6292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59268
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 1.207274e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 58432
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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QD
type: SiteQuality
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MQRankSum
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 832
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57028
num of homozygotes: 0

South Asian
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

African
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allele num: 8660
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European (Finnish)
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South Asian
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Latino
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Other
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East Asian
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.093885271543414e-5
allele num: 54982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.8e-1

MQ
type: SiteQuality
SIO_000300: 4.829e1

DP
type: SiteQuality
SIO_000300: 1.041562e6

QD
type: SiteQuality
SIO_000300: 1.184e1

FS
type: SiteQuality
SIO_000300: 3.716e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 1303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8909
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.893150581197229e-5
allele num: 52822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14374
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 1.01209e6

FS
type: SiteQuality
SIO_000300: 2.834e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.455e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 31519
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65034
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031353135313531e-4
allele num: 9696
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

QD
type: SiteQuality
SIO_000300: 2.357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 2.701183e6

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31525
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variant carriers: 2

GenotypeQuality
all individuals: 2762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047201145747631e-5
allele num: 65634
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.967e1

DP
type: SiteQuality
SIO_000300: 2.711066e6

GenotypeQuality
all individuals: 2254
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 2100
bin: 8.25e1
variant carriers: 17

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 9451
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variant carriers: 6

GenotypeQuality
all individuals: 1093
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variant carriers: 7

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3556
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1994
bin: 9.25e1
variant carriers: 22

GenotypeQuality
all individuals: 37854
bin: 9.75e1
variant carriers: 18874

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2996
allele frequency: 1.818402524884681e-1
allele num: 16476
num of homozygotes: 301

Other
type: Population
allele count: 192
allele frequency: 2.119205298013245e-1
allele num: 906
num of homozygotes: 17

Latino
type: Population
allele count: 1124
allele frequency: 9.760333449114275e-2
allele num: 11516
num of homozygotes: 66

African
type: Population
allele count: 406
allele frequency: 4.06813627254509e-2
allele num: 9980
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 1135
allele frequency: 1.723352566049195e-1
allele num: 6586
num of homozygotes: 88

East Asian
type: Population
allele count: 209
allele frequency: 2.419541560546423e-2
allele num: 8638
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 15137
allele frequency: 2.29167928298916e-1
allele num: 66052
num of homozygotes: 1724

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.84e-2

DP
type: SiteQuality
SIO_000300: 3.25702e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 1.946e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2190
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variant carriers: 0

GenotypeQuality
all individuals: 5320
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GenotypeQuality
all individuals: 2922
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 3189
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variant carriers: 0

GenotypeQuality
all individuals: 12129
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variant carriers: 0

GenotypeQuality
all individuals: 3418
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510665296996797e-5
allele num: 66196
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

DP
type: SiteQuality
SIO_000300: 3.180168e6

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.369e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
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GenotypeQuality
all individuals: 2920
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1641
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015135982632817e-5
allele num: 66332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 5.791e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.63e-1

DP
type: SiteQuality
SIO_000300: 3.183315e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12428
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variant carriers: 0

GenotypeQuality
all individuals: 28987
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1641
bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 2201
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.963e1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 3.184263e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.844e0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
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GenotypeQuality
all individuals: 28988
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variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 11
bin: 4.25e1
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GenotypeQuality
all individuals: 1641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
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GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.871e1

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.585e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.998e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 3.186562e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.003e0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28987
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.46e0

QD
type: SiteQuality
SIO_000300: 1.423e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

DP
type: SiteQuality
SIO_000300: 3.188767e6

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

FS
type: SiteQuality
SIO_000300: 2.003e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.294e0

DP
type: SiteQuality
SIO_000300: 3.188887e6

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 12800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 3.626e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e0

DP
type: SiteQuality
SIO_000300: 3.190255e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12807
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28984
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2203
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.781e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 3.190755e6

MQRankSum
type: SiteQuality
SIO_000300: -1.066e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -3.063e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 3.190693e6

QD
type: SiteQuality
SIO_000300: 1.802e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 4.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 3.190344e6

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 1.757e0

DP
type: SiteQuality
SIO_000300: 3.190304e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.815e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.152e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.638e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.454e1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

DP
type: SiteQuality
SIO_000300: 3.190042e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3415
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 411
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GenotypeQuality
all individuals: 1639
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GenotypeQuality
all individuals: 28980
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.909231962761831e-4
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.816e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.16e-1

FS
type: SiteQuality
SIO_000300: 2.0589e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 3.188037e6

VQSLOD
type: SiteQuality
SIO_000300: -2.911e0

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 2955
bin: 3.25e1
variant carriers: 1380

GenotypeQuality
all individuals: 5959
bin: 2.5e0
variant carriers: 1140

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 949

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 986

GenotypeQuality
all individuals: 11768
bin: 9.75e1
variant carriers: 8215

GenotypeQuality
all individuals: 2279
bin: 4.75e1
variant carriers: 1340

GenotypeQuality
all individuals: 3272
bin: 1.75e1
variant carriers: 1367

GenotypeQuality
all individuals: 3895
bin: 2.25e1
variant carriers: 1401

GenotypeQuality
all individuals: 1811
bin: 6.75e1
variant carriers: 1023

GenotypeQuality
all individuals: 3790
bin: 7.5e0
variant carriers: 1380

GenotypeQuality
all individuals: 3196
bin: 2.75e1
variant carriers: 1424

GenotypeQuality
all individuals: 2885
bin: 6.25e1
variant carriers: 1176

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 838

GenotypeQuality
all individuals: 2490
bin: 4.25e1
variant carriers: 1361

GenotypeQuality
all individuals: 978
bin: 9.25e1
variant carriers: 740

European (Non-Finnish)
type: Population
allele count: 13955
allele frequency: 2.872817852437418e-1
allele num: 48576
num of homozygotes: 0

Latino
type: Population
allele count: 3209
allele frequency: 3.587078023697742e-1
allele num: 8946
num of homozygotes: 0

Other
type: Population
allele count: 189
allele frequency: 2.779411764705882e-1
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 3612
allele frequency: 3.040915979121064e-1
allele num: 11878
num of homozygotes: 0

East Asian
type: Population
allele count: 1866
allele frequency: 3.079207920792079e-1
allele num: 6060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 994
allele frequency: 2.170305676855895e-1
allele num: 4580
num of homozygotes: 0

African
type: Population
allele count: 1824
allele frequency: 2.625215889464594e-1
allele num: 6948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.241e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

QD
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 2.93853e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2675
bin: 3.75e1
variant carriers: 506

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 165

GenotypeQuality
all individuals: 3790
bin: 7.5e0
variant carriers: 693

GenotypeQuality
all individuals: 3895
bin: 2.25e1
variant carriers: 667

GenotypeQuality
all individuals: 2033
bin: 5.25e1
variant carriers: 340

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 160

GenotypeQuality
all individuals: 11768
bin: 9.75e1
variant carriers: 3205

GenotypeQuality
all individuals: 3510
bin: 1.25e1
variant carriers: 712

GenotypeQuality
all individuals: 5959
bin: 2.5e0
variant carriers: 582

GenotypeQuality
all individuals: 3196
bin: 2.75e1
variant carriers: 601

GenotypeQuality
all individuals: 1811
bin: 6.75e1
variant carriers: 265

GenotypeQuality
all individuals: 2279
bin: 4.75e1
variant carriers: 391

GenotypeQuality
all individuals: 978
bin: 9.25e1
variant carriers: 138

GenotypeQuality
all individuals: 2885
bin: 6.25e1
variant carriers: 280

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 233

South Asian
type: Population
allele count: 1678
allele frequency: 1.412695740023573e-1
allele num: 11878
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 4860
allele frequency: 1.000494071146245e-1
allele num: 48576
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 327
allele frequency: 7.139737991266376e-2
allele num: 4580
num of homozygotes: 0

Latino
type: Population
allele count: 529
allele frequency: 5.913257321708026e-2
allele num: 8946
num of homozygotes: 0

African
type: Population
allele count: 593
allele frequency: 8.53483016695452e-2
allele num: 6948
num of homozygotes: 0

Other
type: Population
allele count: 75
allele frequency: 1.102941176470588e-1
allele num: 680
num of homozygotes: 0

East Asian
type: Population
allele count: 422
allele frequency: 6.963696369636964e-2
allele num: 6060
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.241e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 2.93853e6

GenotypeQuality
all individuals: 11768
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2490
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3510
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3895
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3272
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2033
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5959
bin: 2.5e0
variant carriers: 19

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 978
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variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1829
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.094460346859741e-3
allele num: 11878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.05862977602108e-4
allele num: 48576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.65016501650165e-4
allele num: 6060
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.11781801922647e-4
allele num: 8946
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.439263097294185e-4
allele num: 6948
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.93853e6

QD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.241e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 3196
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 978
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2490
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3790
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 1364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2885
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1131
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2675
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11768
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2033
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2279
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3272
bin: 1.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.911396574440053e-4
allele num: 48576
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 8.418925745074928e-4
allele num: 11878
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.439263097294185e-4
allele num: 6948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.11781801922647e-4
allele num: 8946
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.65016501650165e-4
allele num: 6060
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.470588235294118e-3
allele num: 680
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.241e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 2.93853e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.241e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 2.93853e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 1233
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variant carriers: 0

GenotypeQuality
all individuals: 7069
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GenotypeQuality
all individuals: 2543
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GenotypeQuality
all individuals: 2702
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GenotypeQuality
all individuals: 7603
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GenotypeQuality
all individuals: 3322
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GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.541782300339192e-4
allele num: 6486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62962
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 3.158e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.523e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.904753e6

GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 5898
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variant carriers: 0

GenotypeQuality
all individuals: 1950
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GenotypeQuality
all individuals: 541
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variant carriers: 0

GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 1793
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GenotypeQuality
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GenotypeQuality
all individuals: 14485
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GenotypeQuality
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GenotypeQuality
all individuals: 313
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GenotypeQuality
all individuals: 2270
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variant carriers: 0

GenotypeQuality
all individuals: 3180
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variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.296739524610161e-5
allele num: 60666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 1.108e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.752337e6

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e0

GenotypeQuality
all individuals: 7317
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3096
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variant carriers: 0

GenotypeQuality
all individuals: 3149
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variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.662620955674525e-5
allele num: 60146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.899e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

FS
type: SiteQuality
SIO_000300: 5.082e0

DP
type: SiteQuality
SIO_000300: 1.733537e6

VQSLOD
type: SiteQuality
SIO_000300: -2.21e0

GenotypeQuality
all individuals: 2036
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 2.75e1
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GenotypeQuality
all individuals: 1363
bin: 1.25e1
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GenotypeQuality
all individuals: 3708
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GenotypeQuality
all individuals: 353
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GenotypeQuality
all individuals: 7912
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1201
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GenotypeQuality
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GenotypeQuality
all individuals: 1780
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GenotypeQuality
all individuals: 2108
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variant carriers: 0

GenotypeQuality
all individuals: 7314
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.224889759921607e-4
allele num: 8164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15360
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.686462e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.835e0

VQSLOD
type: SiteQuality
SIO_000300: -9.470000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.846e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

GenotypeQuality
all individuals: 645
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7315
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2045
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.760129545534551e-5
allele num: 56814
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.94e0

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

DP
type: SiteQuality
SIO_000300: 1.678082e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0